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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0142000 |
| Transcript ID | LotjaGi6g1v0142000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2; TrEMBL-Plants: tr|G7IV10|G7IV10_MEDTR Emp24/gp25L/p24 family/GOLD protein; Found in the gene: LotjaGi6g1v0142000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40973961..40976738) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTCTAGCAGCAGAGGATCACAGCTCTTAATTAACAATGTAAACCTCAAACTTCACAAAATGATCTACCTGAGAAT CCTTCTTACGTTCCTTTCCTTTTCCTTTTTTTCCCCTTAGAATCATTACTCCCTTTCCGTTTTTAAATTCGTTTTGGAGT AAAATCATTGATATAAAAGGTAACATTCTTCAATTCAATTGTTGCATGTGTCTTTCCAACCATATTGATTCATCCTAATG CTATCCATCGAATGCTATAATTCTCAAATTGAAATTCATATTTTGTTTCACACATTCATCATTTGAAAAGATGATCATTA ATGTGAACATTTTGGAAACAACAATTTTTTCAGAAAGCTTACAAAGTAGATATATTGGTGTCCTGCACTCCTGCACTATG AAATTTTGGGGAAAATGATGGCGCAAAACAGAGAAATTCTATGCAATTCTCATTAGAATCTTGTTGAATGTGTCAATGCA GTGATAGAGATGAAGCTGGGGTTGCTCAATGTTGCCATTGTAGTGGTAATTTTATTATGCAGCTTGAATACATTGCTTGG GATTAGGTTTATGATTGATAGAGAAGAATGCTTCTCTCATAATGTTCAGTATGAAGGGGATACAGTTCATGCTTCATTTG TTGTCATCAGCACTGATTCATCTTTGCACTATACTCAAGAAGGTTTAGACCTTGTGGTAAGCACTGTGAAATCTATTTAT GAACCTTTTGTGTGAAATTGCTTTTCTGATTACAGGAGTTCCTTTTTTTTTATTATTATTGTGTTAGGGGGTCTTTTATG ATATTGTAGAAGGACTGTAACATCATGTGCTTTAAGATGATTTGAAACAACACAAAATGAGTCATCTCTTGTATTATAAT CCATCTTTCATGTCTTTGGATATCTGCAAATGTAACCAATCCTAATAGTGGAATGTGCTGTGAAAAGTCAAGTGAGTTAT GTTAGAAGTTGTTATTCCATAACCTAAGAAGAGGGATTCTCCGATGAAGCATGGTGGTGCGTATTGGTGAGTATGGCCAA GAGCACGGTGGTGTTGAGAATCCATTGCGAGGAAGATATCTGCAAAAGACACTTCAGAAAACTCTCTCACTCAAGTCAAC AATAGATTAGAGAGAGAACTCTCTAAATTTAGAAAAGCAATATGAGAGCAAAATGAGCAATGACTAGTTTACCGCGTGAT CAAACTAGTATGTATTGCTGTCAAAGTGAATAGTAATAGAAGCATTTATCCTTTGCTAGGTTGTCGAGTAGTTGACATTT GAGATATCAACCTTACTTAGGCAAACTTGACCATCAATTTTATCAACTTAGCATTGTTCTGTGTTTGGCCGTCATGGCCG ACCAACTTGATGGTCAGCTGGTCATGTAGCACTTGGGCCGACCAAGACAATGGTGATTGTGTGGTCATTTGAGCCGACCA GAATAAAATATAATACAAAACCATTCACGTATCTTCATCAAACACCTTAAGTTTTTTGGATTATGGTTCACGATAAGTTA CCATATGCAAAATAACATCACTGGTTTGTTCCTATAATTAATATCTAGGACTGTGACATTTTTATAATTTATTTTTCTGT GCAGTTCTAACTTCTAATTAAAGCCTTGCTTGCCATATGAGAATAAAATTATAAGTTGATGACTACAATTTATTACCCTC AGTGTTTCAATTTTTACTTACATGTTATATTAGAATGCTTAAGAAGTAAACTACTGATTCAATGGTTTTCTGTTGAAATC GTTAGGTGAAGGGACCTTCTGGTGATCAAATTCAAGATTTTCAAAACAAGATAAGTGAGAAATTCGAATTCGTGGCTCGA CACAAAGGACCCTATCGCTTCTGCTTCACCAATAAGTCTCCTTATCGCGAAAAAATCGATTTTGATGTGCATTCAAACCA CTTTCCACCCACTGATCAGCATGTGAAAGATGGTGAGCCACTCATCATGAACTAATTTAAAATTTGTTACAGTTTACTTT AATTTGATCCATTTTGCAAATTGCAACCGTAAAGCCTTCTAGATTGATATGTTCATGTTTGCAGAGCATTTGACTCCTTT GTTAGATCAGATCATAAAGTTAGAGGAAGCTCTTTTCAACATTCAGTATGAACAGCATTGGCTTGAGGCACAGACAGAAC GCCAGGCAATAGGTACATCACATTGATATCACAATAAGGTTATGTTGCTTCAATTTCATGTATAGAGTAACAAATTATTA GCATATTTGGACCAACCACCATTTCATCAAAATCAGTTCTCGATCCCAGAAGCTATTCACCTAGGCTTTTCTGCTGAATT GATTCTGATTTCAGAATCAATTATAGAAGGATTTTGAAACATACACTGTATGTAAGACTTGTGCATTGCTGTTGCAGTAA ATAATGCTATGAGCTCCAGAGCGATTCACAAGGCCATACTTGAATCAGCAGCATTAATCGGTACCAGCATTCTGCAAGTT CATCTTCTTCACCGCCTCTTTGAAAGAAAGCTTGTGACGTAGAAAACTGCAATGAATGGATATGTATGTTGATTTTGGAG AAAAACTTCTCAGCTCCACTCAATTTTGTTTGTATTTTAAGTTAATTTGTATGATAGGGATCAGCTGATTCAGAATCATT TAGCAGCTTTGGTTTCCTTTTTTATTTAAGGGCAATTCTGCACATGAATTATACTTTTGTCACCCTGTTATGCTACACAA GAGATATGCTATGTACTGTTAACATTATTTACTGGCTTATTAAATTTAAGCAAATATT
CDS sequence (LotjaGi6g1v0142000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTGGGGTTGCTCAATGTTGCCATTGTAGTGGTAATTTTATTATGCAGCTTGAATACATTGCTTGGGATTAGGTT TATGATTGATAGAGAAGAATGCTTCTCTCATAATGTTCAGTATGAAGGGGATACAGTTCATGCTTCATTTGTTGTCATCA GCACTGATTCATCTTTGCACTATACTCAAGAAGGTTTAGACCTTGTGGTGAAGGGACCTTCTGGTGATCAAATTCAAGAT TTTCAAAACAAGATAAGTGAGAAATTCGAATTCGTGGCTCGACACAAAGGACCCTATCGCTTCTGCTTCACCAATAAGTC TCCTTATCGCGAAAAAATCGATTTTGATGTGCATTCAAACCACTTTCCACCCACTGATCAGCATGTGAAAGATGAGCATT TGACTCCTTTGTTAGATCAGATCATAAAGTTAGAGGAAGCTCTTTTCAACATTCAGTATGAACAGCATTGGCTTGAGGCA CAGACAGAACGCCAGGCAATAGTAAATAATGCTATGAGCTCCAGAGCGATTCACAAGGCCATACTTGAATCAGCAGCATT AATCGGTACCAGCATTCTGCAAGTTCATCTTCTTCACCGCCTCTTTGAAAGAAAGCTTGTGACGTAG
Protein sequence (LotjaGi6g1v0142000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLGLLNVAIVVVILLCSLNTLLGIRFMIDREECFSHNVQYEGDTVHASFVVISTDSSLHYTQEGLDLVVKGPSGDQIQD FQNKISEKFEFVARHKGPYRFCFTNKSPYREKIDFDVHSNHFPPTDQHVKDEHLTPLLDQIIKLEEALFNIQYEQHWLEA QTERQAIVNNAMSSRAIHKAILESAALIGTSILQVHLLHRLFERKLVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 2 | 206 | 205 | 8.1E-115 | ||
| PANTHER | 2 | 206 | 205 | 8.1E-115 | – | |
| TMHMM | 3 | 25 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| SMART | 24 | 203 | 180 | 7.4E-33 | ||
| Phobius | 25 | 208 | 184 | - | – | |
| Pfam | 30 | 203 | 174 | 5.1E-29 | ||
| ProSiteProfiles | 32 | 119 | 88 | 13.637 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0142000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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