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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149200 |
| Transcript ID | LotjaGi6g1v0149200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT1G50600.1 scarecrow-like 5; Swiss-Prot: sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5; TrEMBL-Plants: tr|A0A151S4X1|A0A151S4X1_CAJCA Scarecrow-like protein 5; Found in the gene: LotjaGi6g1v0149200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42485544..42487184) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGACATCTCAAAAGCATGAAATATCTTACGGCTCTGGCAGGTTTTATGTCGAGCCTGTGCAGAATCTGGAATCATA CTGTTTACCATCAAGTGAGAACCTAGATAATTACTCTTCCTCTGATAACAGCACCCAAATAACTTACCCTTCAGTCCAGA CTTTAGAACAATATTGCACCCATGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTAATGTCAGT TTTTCATCTGACAACAGCCCAGTGTCAAAGCAAGAGTCAAACTCATATGTGTTTCGGCCGCAGCAATCTGTTGAAATTTT TAACAGCGCACCTGAGGATGATTATTACTCGGCACAAGACTTTGATGACCTGAGGCATAAGATAAGAGAGCTGGAAACCG CAATGCTGGGACCGAATACAGATATGCTAGACACATATGATGCTGTGATTGCAGAAGAATCTGCTTCGTTTTTGTTAGCG GAAGAGAAGTGGAACAAAATGATGGAGATAAAATCTAGAGGGGATTTGAAAGAGATACTTTATGCTTGTGCAAAAGCAAT GGCTGGGAATGATATGGAGATAACTGAATGTTTGGTGTCGGAGTTGCGCAAAATGGTGTCGATTTCTGGCAACCCGATCC AACGGTTGGGAGCGTACATGTTGGAGGCGCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAATCCTTGAAA TGTACTGTGCCTACTGGAAATGAACTACTTTCTTACATGAATGTGCTTTATGAGATATGTCCATACTTCAAGTTTGGATA TATGTCAGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGCGAAGTCCACATAATTGACTTTCAGATTAGCCAGG GAACACAGTGGGTGAGCCTAATCCAAGCTCTTGCTCACCGACCCGGAGGACCGCCAAAGGTGAGAATAACCGGTGTTGAT GACACATTTTCATCTTATGCCCGGGGAGGGGGACTTGATATTGTCGGAGAGAGGCTATCAACACTTGCACAGTCTTGCCA TGTTCCTTTTGAGTTCCATGCTGTCAGAGCTACTGCTCCTGAGCTGCAACTTGAAGACTTTGATCTTCGACCTTATGAAG CTGTGGCTGTGAACTTTGCCATTATGCTGCACCATGTACCAGATGAAAGCGTGAGCAGCCATAATCACCGGGACCGGTTG TTGAAATTGGCTAAGTGTTTGTCTCCAAAGGTAGTCACTCTGGTGGAGCAGGAATTCAATACTAACAACGCTCCGTTCTT GCAGCGTTTCGTTGAGACAATGAACTACTACCAGGCTGTTTTTGAATCAATTGATGTTGTTCTTCCAAGGGAGCACAAGG AGAGGATCAATGTGGAACAGCATTGTTTGGCTCGCGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAGAGAGTGGAA CGTCATGAACTTCTGAATAAGTGGAGAATGCGGTTCGCCAGTGCTGGATTTACACCTTATCCATTGAACTCCTATATAAA TTCTTCAATCAAGGATCTTCTGGAGAGCTACCGCGGACATTACACCTTAGAAGAGAGAGATGGTGCACTGTTTCTTGGTT GGATGAATCAAGTTCTTGTTGCCTCTTGTGCTTGGAGATGA
CDS sequence (LotjaGi6g1v0149200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGACATCTCAAAAGCATGAAATATCTTACGGCTCTGGCAGGTTTTATGTCGAGCCTGTGCAGAATCTGGAATCATA CTGTTTACCATCAAGTGAGAACCTAGATAATTACTCTTCCTCTGATAACAGCACCCAAATAACTTACCCTTCAGTCCAGA CTTTAGAACAATATTGCACCCATGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTAATGTCAGT TTTTCATCTGACAACAGCCCAGTGTCAAAGCAAGAGTCAAACTCATATGTGTTTCGGCCGCAGCAATCTGTTGAAATTTT TAACAGCGCACCTGAGGATGATTATTACTCGGCACAAGACTTTGATGACCTGAGGCATAAGATAAGAGAGCTGGAAACCG CAATGCTGGGACCGAATACAGATATGCTAGACACATATGATGCTGTGATTGCAGAAGAATCTGCTTCGTTTTTGTTAGCG GAAGAGAAGTGGAACAAAATGATGGAGATAAAATCTAGAGGGGATTTGAAAGAGATACTTTATGCTTGTGCAAAAGCAAT GGCTGGGAATGATATGGAGATAACTGAATGTTTGGTGTCGGAGTTGCGCAAAATGGTGTCGATTTCTGGCAACCCGATCC AACGGTTGGGAGCGTACATGTTGGAGGCGCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAATCCTTGAAA TGTACTGTGCCTACTGGAAATGAACTACTTTCTTACATGAATGTGCTTTATGAGATATGTCCATACTTCAAGTTTGGATA TATGTCAGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGCGAAGTCCACATAATTGACTTTCAGATTAGCCAGG GAACACAGTGGGTGAGCCTAATCCAAGCTCTTGCTCACCGACCCGGAGGACCGCCAAAGGTGAGAATAACCGGTGTTGAT GACACATTTTCATCTTATGCCCGGGGAGGGGGACTTGATATTGTCGGAGAGAGGCTATCAACACTTGCACAGTCTTGCCA TGTTCCTTTTGAGTTCCATGCTGTCAGAGCTACTGCTCCTGAGCTGCAACTTGAAGACTTTGATCTTCGACCTTATGAAG CTGTGGCTGTGAACTTTGCCATTATGCTGCACCATGTACCAGATGAAAGCGTGAGCAGCCATAATCACCGGGACCGGTTG TTGAAATTGGCTAAGTGTTTGTCTCCAAAGGTAGTCACTCTGGTGGAGCAGGAATTCAATACTAACAACGCTCCGTTCTT GCAGCGTTTCGTTGAGACAATGAACTACTACCAGGCTGTTTTTGAATCAATTGATGTTGTTCTTCCAAGGGAGCACAAGG AGAGGATCAATGTGGAACAGCATTGTTTGGCTCGCGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAGAGAGTGGAA CGTCATGAACTTCTGAATAAGTGGAGAATGCGGTTCGCCAGTGCTGGATTTACACCTTATCCATTGAACTCCTATATAAA TTCTTCAATCAAGGATCTTCTGGAGAGCTACCGCGGACATTACACCTTAGAAGAGAGAGATGGTGCACTGTTTCTTGGTT GGATGAATCAAGTTCTTGTTGCCTCTTGTGCTTGGAGATGA
Protein sequence (LotjaGi6g1v0149200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTSQKHEISYGSGRFYVEPVQNLESYCLPSSENLDNYSSSDNSTQITYPSVQTLEQYCTHESASTSNSFPYQNSPSNVS FSSDNSPVSKQESNSYVFRPQQSVEIFNSAPEDDYYSAQDFDDLRHKIRELETAMLGPNTDMLDTYDAVIAEESASFLLA EEKWNKMMEIKSRGDLKEILYACAKAMAGNDMEITECLVSELRKMVSISGNPIQRLGAYMLEALVARMASSGSTIYKSLK CTVPTGNELLSYMNVLYEICPYFKFGYMSANGAIAEAMKEESEVHIIDFQISQGTQWVSLIQALAHRPGGPPKVRITGVD DTFSSYARGGGLDIVGERLSTLAQSCHVPFEFHAVRATAPELQLEDFDLRPYEAVAVNFAIMLHHVPDESVSSHNHRDRL LKLAKCLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCLAREVVNLVACEGAERVE RHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGHYTLEERDGALFLGWMNQVLVASCAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 546 | 528 | 1.5E-264 | – | |
| PANTHER | 19 | 546 | 528 | 1.5E-264 | – | |
| MobiDBLite | 65 | 95 | 31 | - | – | |
| ProSiteProfiles | 167 | 546 | 380 | 97.258 | ||
| Pfam | 177 | 546 | 370 | 1.2E-131 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0149200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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