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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0155100 |
| Transcript ID | LotjaGi6g1v0155100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH-type with G patch domain protein; TAIR: AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6K687|C3H18_ORYSJ Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|I1N0J9|I1N0J9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0155100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43361897..43369962) extracted from Lotus japonicus Gifu genome v1.2.
TTGGCTTAAAAGCACATTTGGTCCCCCACGATTGAGCTTCGTGCAAAATGAGTCCCTAAACTATTTTTTTAGCATTATTA GTCCCTCACGTTATCTCCTGTTACTACACTTAGTCCTTCTGTTAGATTTTAAACGGTTTTTGCTTTGGTGGAGTTTTTTT AATGACTTGGAGGAGAGAGAAGAAAGTTAACAGGAGAGAGAAGTAGGACATTAGGAGAGAGAGTTGCACATGTTGAGTGC TGACTCTTCAATTTTTTTAAAAATCTCAATTAATATTTTTTTCAATTAGTAAAAATCTCCCAATTAAAATTCTCAAATCA CGTTCAATTTTTTTTCTTTCTCAAATCCTCATCTGGCTTCTTCATCTTCATAGGTTAAATGTTCTTCATCTTCACCATCC TCAAATCACCTTAGCCGAACCAGCAGACAAACCCCACCAACCCACTGCTCTCGAGCTTCACGGCAAGAAATTCTGCAGCC ATCGCGCGTTCTACCTCGGCCAGCCATCGGGTTCTCCTTCTTTCTCATTAATGGTGTTTATTTTCGAGTTTTCTTTCCAG ATCTGGGTTCTCCAGATCTAGTGATGGTGGGTTTGGTGTGGAGGGTTTGATCTGGGTTCTCAATTTTAGTATTCCTGTTT CTGCTGATTTGTTTTCTGATAGGGTTTGGATGCTTGCTGTCTTGTTTTGAGCTCCATGACGATGAATTGCTGTTATGGCT TTTGGTGACAAACTCACTTGGCATCATCTCTCTTGTTAGAGGGAGAGTTTGGGAGTTTGTGTTGCCCTTCATCTGGTTTA TTGCCAGTTTTTTTTCCTTTCTTTTTTGCTGTTTTGTTTCCTTGTCTTTCTTGCGTCTTCTGTCTCATTGTTCTGAGCAT GAGTTTCACAAATTGGGGGTTGTGATTTGGGATGAGGAAACCCTAGATTTGGTTCTCAGCATGAGTTTCTGAGCATTGAT TTTAAGGTTTTTGGTAAATTAAATAGAAGAAGGGGTTGTGTTGATGAATTCTTTTTTCTGGATTTTATGTTTTCAATGAT GGAGAAGATGATGAAAATGAAGGAGGAAGGAGATGAAGATTCAAATTTTTTTTATTTTAATTAATTTTGTCAGTTTAAAT ATTAATAAAAAATTCCATGTAGGCACAAACCGTTAATTTTCTAACGGAAAAGGGGTAAGGGACCAATACTATTAACAGAG TATAACGCTGGGGATCAAGAATGCTATTTTTAAAGTTTAGGGACTCATTTTGCACGAAGCTCAATCGTGAGGGACTAAAT GTGCTTTTAAGCCTATTAATTTTAATAAAAGCTGGTGCGGTAGATATTTGAGTGGGTAAATTTAACTCATGTAAAATGAG ACATTTTAGTCGATAAATGCAAGTATAACTATTGATTTGAAAATGGTTGAGTGTGTAATCAAATAATTTCACATCTATAA TTTTGAGACAAGTTAGTTGTCCCACTCAACAATAAGGCTAACATGAGGTTTTTGGTTAACACTTTATTAAATAGGTGGAA ACATCACTTTTATCATGCTTTTTTGATGATAAATAATGCAAAGCGAAAAATGAAATAAAAACTTCTTGAAAAAATCTATT TTATTTTCTGCTTTCACTTAACAAGCAAAGTGCCATTTCTTCTAATTTTATATTTTTGCTTAAAATAGTTAAACAAACTA CATTATATTTTATTTTTACTCATAGTATTAAGGGCACAATGATGCAGCTGTCAATAAAAAAAGGGCACAATGATACAAAT TTCCATCAAAATTAAAATGCAAAATAATAATTTTGTCGTATTAATCAATTTGTGATTTTGTTAGGTTTGTACTATAAATG TTAATAAAATAGAAATGGAGAAGATGGAAAGAAGGTGACAAGGGGAAGAAGGAAAACCTGCGATATGAATAGTTAGGGTT GGGTTGGGTGGTGGCAATAGCAAATAGCAAATAGCAATGGGTAGCTCAGAAGAGAGGGTTCTTCTGGAGGAGCAATTGGA GCTTCAATTGCAGGAGCAAAGGGATTCCCTCTCTGCAATCGATGAAGCTCTTCTCTCTGATCCTACCAACTCCGAGCTCG TTGCGGTATTCTTTTTTCTTTTCACAATCGATGACTTAGTTTTGTTAAAAATTGACAATATATGAGGACTTAGGGGTTTT GGGTTGTGAACAATTGGAGGTGAACAATTGGAGATTCTTAGGGTGCTTTATGAGTTTCTGCATTTTTAAATCTGTATGGA TGTTACTTGGATAATCCATTTGAGTAGTTCATTGGATGTTTTATGGCTATGCATGTGTGTAAGTTTGAGTTTGATTGCTG TGCTGTGTAATGTCTGCTATTTTTGGTCATATGTAGCTCAATTAAGGCAGATAGTCTCTAGTTTGTAGAAAGTATCATTT GGCACGGAGAGGAATGGAACCAAGTTTTATTTCATTCCACCTTTTTCGCTGAATCAAAATATACTTATTTTTAACCTTAT TCACCGTTCTGTTTTAGTTTCAATATGTACCAACCAAAATACAAACCATGTGTTATGTTCTGCCCCACTCTGACTTATCT ACCAAATGCTACTTTTAGACTCACGTTTGTAGCTCCAATGATGCTCAATAGGCTGTTCAAACGGTCAACTAAAGTCTCGG TCTTACATGTGGGATATGTGTGGAGGGTTTGATTTGAGAGTTCTGATGTCCTCACAGATGTTCATGCGTTAAGAGAATAA GAGTGGGTTCAATACCATGTTCCAAACTGTTGCATGGATTCAAAACAAAAATGTCTTGAAACGTGAGATTTCTGCATTTG CTGCTGTATTAGCATAGATTCAAAACAACCGTGTTCATCTTGCAACACTATAAAATCTAAACCGGTTCAAAACTAAAATC ACATAATAAAAGCTGATTCTTAAAATAAGAACTGGTTCACTGAACCATAACCAATGCGGTTCAATTCGGGTGACTCATAA TCAGTTCGGTTTGATTGACTTGTTTTTCCAATTTGGTTTGGTATAGTTTTCCATGATGAAACGAACTGTAACCAGGCCTC GGTCTTCAGCGAGGTGCATGCCATTGGTGCCTTGGGGGCATCTTTCTGGTTTCGGCTAGGCATATCTTTAGTGCCTCATA ATGTAGAATTTTGTTGACTCTATGAGATGGAGTGCGATTATGACTAACAGCATATACATGATGGAATATTATGGCAGTGT TTCATCCATGTGCCAACCTCACCTAGTGGGAAACGGCTTATTGTTGTTGTTGTTCTTGATCATGATAGCCAATCTAAAAT ATCTGAGGCTAATTTTGTGATTTAAATCTCTTTATTTTTGATATTGCAGGTTCATGAAGAGCTTGTTCAGGCAATTAAAG ATGCAGAGGAAGGGCTTCTTCATCTAAAACGTGCAAGATTATTACAGGAAGTAGATTCTGTGCTGCATAACACTAATATG TTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTAGAACCAGAGCCCCTGGAGGAAAAAAGCTATTCTAT TGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAGTAGCAA AGATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGGTATGTAAGATTATCATTTGGGTCAAGTGTGGCCATTTTATT TTTTACTTTGGTGACAAAAAGTATATTATGGTATTCTATCTACATTTTCAATACACTTTTCCTCCCCTTAGTTTTCCTCT ACTGTAACTAATTAGAAAATACAGAAATTTGAAATAACAACAGTTCATTCACATAAAGGAAAATAGGCAACACAGGCATA TGATAGGTATTGTGCTATATTTGTAATTTTCCTTGGTTTTATTTAGAAATAAAAAAGAATGCCAAAGGATAATGCTAGAT ATGCTGTCTCCATACCCCCATGACCCTCACCCTACCGCTCCCCCCTCAAAATAAATAAATATATTATTAGCTACATGTTG TTATCGTTTTAAGAGGAATGTTTCAAGTGTTAGTCCTTGTTAGAGATATAAAAAAAAATTCATTCATGTGTTTTCCACCA AACTCCTTAACCGAATCGTTGGTTCATGATAGCTTAAGCTCTTGTATTTGTTTTTGTTTTTCCCCATTTTCTGAGGATTC CTTATACTCTTTATTTTTGTATTGTTTTCTCTCTCTAATTCTTATTCAACTTCTCTTATCCAAAAAAATAGAAGTATGTT TCTAGGATTCATTTGAAATATATTACAATTGTGCAGTTATCTGAACACTTCTTCTCTATTTGATGTTACTAAAGTCCATA TTCTTCCTTTCACACTTTAAATCTGTTCCTTAGCAACCCATTCAACACATTGTTCATATGAGTGTCGTGTTAATATAGAT TTGTAGTCCTGACACAGCTCATGAACACGCTTTTTATGTTATTTTCGGCTTTCAACTTTTTCTTGTGTCTGGATTACAAG ATACAAGAACAGATTATTTTAATTGAATTATTTGCAACTTTTATCATGAGTATTGTGTTTACATATCATTATATATTGCA TAATCAATACAAACCCTTTTTAAATGCATTCAGTTCTTAAATTAATAATAACTTGAAACAAATTACATGCAATAATTAAA AATTAAGTTGTTTTTTAAAGGTTCCAATTACATTTACACCAATAAAATTTCCTAAGCAGTAAAAAGTGGAACTTAAAACG CCCTTCAATGTGGCATATAAATTTTCTATTTCTCCTTTGTATGTCTCTTTCTTCTTCCTTTCTCACCATTTTGATCATAG TTCTTCAGGGATTTCACAATAACCTCAACAGCCATTAATCGCCATATATGATGAAACTCAAGAAATATCATTCTTATTGA ACATCACATGTCTTTGTAGTGAGTGAAATGGAGTGGAACTTCCACTTATTTTAAGAAGTTTTCTTAGCTTTGTTATCCCT CAAAATTTGGGTTCCAGATTATGCTATAAAATCAATTGCTTTTCATCTCATTGTACTAATGCTAAAACACCGAAGTGCAG ATGTGCAAGTTCTTTTTACAACATCGATGTCGATTTGGTGCTAACTGTCGCCAATCGCATGGTAAGCCACTGTTATTGAG CAAATTGAACAGAGTTGGATAGAGGTGAAATCACTTGGACCCCATTGTAATTAACTTTTTCTCTAAACTCTAGTGACACT TGCATTTTCAAGTGCAGAAATCTGATGAACATTTGGAACCCTCTTTCCTTGATAAAGAATTTGTTGAATCATGTCTTTGT TCAGATTTTGGAAGCTAGTTCATTTGAATATACTCTAGGTTGGGGATCCAAGATTAATCACCTGATTATTAGATATGACT TAAGATATCAATTATCAACTTATTAAGGGGGTGATTTATACATTATGATATTTTTCCATTAGAAGATATAAACTTTATTT GGTATCAGAAAATATGTAGGTGGCTGGTGTTTTTTTTCACCCTGGGGAAGCTGGTATAATAATTCCTATCTACATCTACA TTTCGTTTTGATTCTTCCTGGGCTTTTATTTGACATTTTTCTTTTAAAATTTTTATGAAATGATAATCGTTCTTCTTGGG TGAAATTTATCCCAACTTCAGAATCACTTCCAGATACTTTACTAAGTTTCTCACACGGTTATAGGGTGTTTGGAAATGAG TTTTGCACACACTCCAAAGCACATCCAGTAGAAGCTATAATGGGGAATGTCCACTTTGACGGGTTTTCTGACCTCAATGT GGTGTGGTAACACAATACCAAAAGCCCACTTAGTTCTATTGTGTGATCAGAATCACTTCTAATGTTTATGGCAAACAAGA ACAATGGGGGAGCAGTCCGAGAAAATAAGCAGTAAAAACTTGCAGACTTAGTACTACTAATCCACTTGATTTTTTCTTTG GACATTTCTATTTAGAGTATAAACTATAAAGGGTTAGAAGCCTTATAATCCCTCTTTTTCCAAGCTGATTTGAACTGTCG GTTTGGATGGTTTAGTATGTGACCTCAATATATCACTTGCCTATTTCCAATTATATGTGATTACTCCTTTACATAATCTA CTTGTGTTTTTTCTCCCATTTCAATGCTCGCTTATTTTATTTAGTATATAATACCTATCTACTATCTACATTACAGGAGT TGATGTTCAACTGTCCTCCCTCAAGAGATATGTCCCAACAATCTGGAAGCCATCCCTTGTGGGATCAAGTATATGGGCAC TCTCAGATGCAAAAACAGGCATTTGGAGAGAAGCTGAGCTTGAGCTCTGGGATGAAAAAGCTGGAGTTGGACAAGTTGTT TTCAGAGACAGTGGAAGTTCTATGAAGCTTTGTGCAGAAGAAATAGTATTATCTGAGTATGCAGAAGTAAGCGACTTAGA GAGTGATTCCAGCTTAGAACAATCCGAGTCCAGTGACTACGATGAAGAGGAATCACAAGGTTTAGGATTTCTAGAGAGTA CCAACTTACAGAAAGGTATTCAAACCGACACTGCTTTGTTTGCTAAGTGGGAGAACCACACTAGAGGCATAGCTTCCAAA ATGATGGCTAATATGGGTTTCCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGCTTGATCCGATACCTGTGAA GGTTCTGCCACCAAAGCAATCCTTAGATCATGCACTTGATTCTCGTAAAGGGGAAGAGAATAATGAGAAGCAAGGTAAGA AACGGAGCCGAGGTGGTAAGAGAAAACGTGAAAAGAAATTCGCAGAAGCGAATCGCACAGCGAAAGAGGAAGAAGAATCA GCACCAGATGTCTTCACACTAATAAACAATCAACTGGCAATGCATGGTGAAGCTTCCAATGGTGGATCAATGAAGAAGCA GCAAAGTAAAGATTCAGGGGAAGTTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTATGAGGATGAGGTGAAGGGTTTGA AGATGAGGGTTGCAAAGCTTGAACAAATGGTGAATGCTAACAAAAAGGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAA TTAGTTGAAACCCGCAAGGCTTTGGCAGAGGCTGAATCAGTTCATGCCTCAGCCTCAAATACAGTTGTTGGCAAAGAAAA AGAGAAGAGATGGCTTAAGTTTTAGTAAGGACTTAGGACTCGGTTCTGTCTGTAGTAGCATAATATAATGCCTTCAATTT ATTGTAATGCTGATACTTTAAAAGAAGAAAAAAAGGAAAGGAAATTTACTGGGTTTAACTCAGCTAAGATATTAGGAGAT TGCACTGTAGTATGTAGCCTTCTACATGTTATATTCTATCATGTTTGCTTTTTTACTGGTTGGTTGGTTTGCACTTTGCA CTGTTCTTTAGTCTTTGATTTGTCACTTACCTCCTTTACAAGGTTAAGGAGTTGGTTGGAATCTGATTTCTCACTTTTCA TTTGACATACTCATCAACCTACCCTTTATGGTTTGGCTTATTCTGTAACTATAAAGGTTTATATATTTTGAAAAAAAATG ATGGATTTGGCCTTTGGGAAGTAAGTGTATAGGCTTTTTTACAACACTGATCAATTACAATGTGTGAAAAGGAAGAGATT ATTGACATTTCTCCTTTTAGATGATGGTTTTGGCTGTACTGCAGACTAAATATCAACACCTTTAGTTGAATAAGTCATGT TCCTTTGTGATAAAAGGCTTTGGCTATAGACACTGATGAGTGGTGACCAACCTGCAAGACAAGAAACCTTGATAATTGAT ATGACCTGTGGACAACCATGTTCCAGACATGGTTATCTTGTACTATATGTTGTAAGGTTTTATTGGAAGAACCCTTATAT GGGCCTACAAGGAATCTTCACATGGGTTTAGAGACGTGCAAGATAAGGGTCAAGTGATTGTTGACAAAAAATAAAAGACT AGTGATTGGAACAAATAAAATAACAGTTTTAAATTGAGGTGTGTTCTTGACCAATATAAAAATAAAATAAAAAACTAACA GAAGTGAGGTGTGCTCACCCTTAAATTAAGGAGGAATTAAATTAGTCCATTGCGCATTCAAGAATC
CDS sequence (LotjaGi6g1v0155100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCTCAGAAGAGAGGGTTCTTCTGGAGGAGCAATTGGAGCTTCAATTGCAGGAGCAAAGGGATTCCCTCTCTGC AATCGATGAAGCTCTTCTCTCTGATCCTACCAACTCCGAGCTCGTTGCGGTTCATGAAGAGCTTGTTCAGGCAATTAAAG ATGCAGAGGAAGGGCTTCTTCATCTAAAACGTGCAAGATTATTACAGGAAGTAGATTCTGTGCTGCATAACACTAATATG TTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTAGAACCAGAGCCCCTGGAGGAAAAAAGCTATTCTAT TGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAGTAGCAA AGATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACATCGATGTCGATTTGGTGCT AACTGTCGCCAATCGCATGGAGTTGATGTTCAACTGTCCTCCCTCAAGAGATATGTCCCAACAATCTGGAAGCCATCCCT TGTGGGATCAAGTATATGGGCACTCTCAGATGCAAAAACAGGCATTTGGAGAGAAGCTGAGCTTGAGCTCTGGGATGAAA AAGCTGGAGTTGGACAAGTTGTTTTCAGAGACAGTGGAAGTTCTATGAAGCTTTGTGCAGAAGAAATAGTATTATCTGAG TATGCAGAAGTAAGCGACTTAGAGAGTGATTCCAGCTTAGAACAATCCGAGTCCAGTGACTACGATGAAGAGGAATCACA AGGTTTAGGATTTCTAGAGAGTACCAACTTACAGAAAGGTATTCAAACCGACACTGCTTTGTTTGCTAAGTGGGAGAACC ACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGTTTCCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGA ATGCTTGATCCGATACCTGTGAAGGTTCTGCCACCAAAGCAATCCTTAGATCATGCACTTGATTCTCGTAAAGGGGAAGA GAATAATGAGAAGCAAGGTAAGAAACGGAGCCGAGGTGGTAAGAGAAAACGTGAAAAGAAATTCGCAGAAGCGAATCGCA CAGCGAAAGAGGAAGAAGAATCAGCACCAGATGTCTTCACACTAATAAACAATCAACTGGCAATGCATGGTGAAGCTTCC AATGGTGGATCAATGAAGAAGCAGCAAAGTAAAGATTCAGGGGAAGTTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTA TGAGGATGAGGTGAAGGGTTTGAAGATGAGGGTTGCAAAGCTTGAACAAATGGTGAATGCTAACAAAAAGGAGAAGGCTG TTTATGAGGCTGCTATGAGAAAATTAGTTGAAACCCGCAAGGCTTTGGCAGAGGCTGAATCAGTTCATGCCTCAGCCTCA AATACAGTTGTTGGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG
Protein sequence (LotjaGi6g1v0155100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSEERVLLEEQLELQLQEQRDSLSAIDEALLSDPTNSELVAVHEELVQAIKDAEEGLLHLKRARLLQEVDSVLHNTNM FTEEEKVEPLDPTDVEPEPLEEKSYSIGSKCRFRHKDGRWYNGQVVQLDNSVAKISFLTPTSENMLMCKFFLQHRCRFGA NCRQSHGVDVQLSSLKRYVPTIWKPSLVGSSIWALSDAKTGIWREAELELWDEKAGVGQVVFRDSGSSMKLCAEEIVLSE YAEVSDLESDSSLEQSESSDYDEEESQGLGFLESTNLQKGIQTDTALFAKWENHTRGIASKMMANMGFREGMGLGVTGQG MLDPIPVKVLPPKQSLDHALDSRKGEENNEKQGKKRSRGGKRKREKKFAEANRTAKEEEESAPDVFTLINNQLAMHGEAS NGGSMKKQQSKDSGEVKKVDRKVLVAYEDEVKGLKMRVAKLEQMVNANKKEKAVYEAAMRKLVETRKALAEAESVHASAS NTVVGKEKEKRWLKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 495 | 495 | 2.3E-243 | – | |
| Coils | 11 | 31 | 21 | - | – | |
| Coils | 45 | 65 | 21 | - | – | |
| Gene3D | 81 | 138 | 58 | 1.9E-5 | – | |
| Gene3D | 139 | 181 | 43 | 4.1E-5 | – | |
| ProSiteProfiles | 142 | 169 | 28 | 13.601 | ||
| MobiDBLite | 248 | 267 | 20 | - | – | |
| MobiDBLite | 253 | 267 | 15 | - | – | |
| SMART | 293 | 339 | 47 | 2.0E-12 | ||
| Pfam | 295 | 337 | 43 | 3.6E-11 | ||
| ProSiteProfiles | 295 | 351 | 57 | 12.647 | ||
| MobiDBLite | 339 | 381 | 43 | - | – | |
| MobiDBLite | 339 | 354 | 16 | - | – | |
| Coils | 361 | 381 | 21 | - | – | |
| MobiDBLite | 364 | 381 | 18 | - | – | |
| Coils | 424 | 475 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0155100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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