Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0155100 |
| Transcript ID | LotjaGi6g1v0155100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH-type with G patch domain protein; TAIR: AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6K687|C3H18_ORYSJ Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|I1N0J9|I1N0J9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0155100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43362508..43369961) extracted from Lotus japonicus Gifu genome v1.2.
TGGCTTAAAAGCACATTTGGTCCCCCACGATTGAGCTTCGTGCAAAATGAGTCCCTAAACTATTTTTTTAGCATTATTAG TCCCTCACGTTATCTCCTGTTACTACACTTAGTCCTTCTGTTAGATTTTAAACGGTTTTTGCTTTGGTGGAGTTTTTTTA ATGACTTGGAGGAGAGAGAAGAAAGTTAACAGGAGAGAGAAGTAGGACATTAGGAGAGAGAGTTGCACATGTTGAGTGCT GACTCTTCAATTTTTTTAAAAATCTCAATTAATATTTTTTTCAATTAGTAAAAATCTCCCAATTAAAATTCTCAAATCAC GTTCAATTTTTTTTCTTTCTCAAATCCTCATCTGGCTTCTTCATCTTCATAGGTTAAATGTTCTTCATCTTCACCATCCT CAAATCACCTTAGCCGAACCAGCAGACAAACCCCACCAACCCACTGCTCTCGAGCTTCACGGCAAGAAATTCTGCAGCCA TCGCGCGTTCTACCTCGGCCAGCCATCGGGTTCTCCTTCTTTCTCATTAATGGTGTTTATTTTCGAGTTTTCTTTCCAGA TCTGGGTTCTCCAGATCTAGTGATGGTGGGTTTGGTGTGGAGGGTTTGATCTGGGTTCTCAATTTTAGTATTCCTGTTTC TGCTGATTTGTTTTCTGATAGGGTTTGGATGCTTGCTGTCTTGTTTTGAGCTCCATGACGATGAATTGCTGTTATGGCTT TTGGTGACAAACTCACTTGGCATCATCTCTCTTGTTAGAGGGAGAGTTTGGGAGTTTGTGTTGCCCTTCATCTGGTTTAT TGCCAGTTTTTTTTCCTTTCTTTTTTGCTGTTTTGTTTCCTTGTCTTTCTTGCGTCTTCTGTCTCATTGTTCTGAGCATG AGTTTCACAAATTGGGGGTTGTGATTTGGGATGAGGAAACCCTAGATTTGGTTCTCAGCATGAGTTTCTGAGCATTGATT TTAAGGTTTTTGGTAAATTAAATAGAAGAAGGGGTTGTGTTGATGAATTCTTTTTTCTGGATTTTATGTTTTCAATGATG GAGAAGATGATGAAAATGAAGGAGGAAGGAGATGAAGATTCAAATTTTTTTTATTTTAATTAATTTTGTCAGTTTAAATA TTAATAAAAAATTCCATGTAGGCACAAACCGTTAATTTTCTAACGGAAAAGGGGTAAGGGACCAATACTATTAACAGAGT ATAACGCTGGGGATCAAGAATGCTATTTTTAAAGTTTAGGGACTCATTTTGCACGAAGCTCAATCGTGAGGGACTAAATG TGCTTTTAAGCCTATTAATTTTAATAAAAGCTGGTGCGGTAGATATTTGAGTGGGTAAATTTAACTCATGTAAAATGAGA CATTTTAGTCGATAAATGCAAGTATAACTATTGATTTGAAAATGGTTGAGTGTGTAATCAAATAATTTCACATCTATAAT TTTGAGACAAGTTAGTTGTCCCACTCAACAATAAGGCTAACATGAGGTTTTTGGTTAACACTTTATTAAATAGGTGGAAA CATCACTTTTATCATGCTTTTTTGATGATAAATAATGCAAAGCGAAAAATGAAATAAAAACTTCTTGAAAAAATCTATTT TATTTTCTGCTTTCACTTAACAAGCAAAGTGCCATTTCTTCTAATTTTATATTTTTGCTTAAAATAGTTAAACAAACTAC ATTATATTTTATTTTTACTCATAGTATTAAGGGCACAATGATGCAGCTGTCAATAAAAAAAGGGCACAATGATACAAATT TCCATCAAAATTAAAATGCAAAATAATAATTTTGTCGTATTAATCAATTTGTGATTTTGTTAGGTTTGTACTATAAATGT TAATAAAATAGAAATGGAGAAGATGGAAAGAAGGTGACAAGGGGAAGAAGGAAAACCTGCGATATGAATAGTTAGGGTTG GGTTGGGTGGTGGCAATAGCAAATAGCAAATAGCAATGGGTAGCTCAGAAGAGAGGGTTCTTCTGGAGGAGCAATTGGAG CTTCAATTGCAGGAGCAAAGGGATTCCCTCTCTGCAATCGATGAAGCTCTTCTCTCTGATCCTACCAACTCCGAGCTCGT TGCGGTATTCTTTTTTCTTTTCACAATCGATGACTTAGTTTTGTTAAAAATTGACAATATATGAGGACTTAGGGGTTTTG GGTTGTGAACAATTGGAGGTGAACAATTGGAGATTCTTAGGGTGCTTTATGAGTTTCTGCATTTTTAAATCTGTATGGAT GTTACTTGGATAATCCATTTGAGTAGTTCATTGGATGTTTTATGGCTATGCATGTGTGTAAGTTTGAGTTTGATTGCTGT GCTGTGTAATGTCTGCTATTTTTGGTCATATGTAGCTCAATTAAGGCAGATAGTCTCTAGTTTGTAGAAAGTATCATTTG GCACGGAGAGGAATGGAACCAAGTTTTATTTCATTCCACCTTTTTCGCTGAATCAAAATATACTTATTTTTAACCTTATT CACCGTTCTGTTTTAGTTTCAATATGTACCAACCAAAATACAAACCATGTGTTATGTTCTGCCCCACTCTGACTTATCTA CCAAATGCTACTTTTAGACTCACGTTTGTAGCTCCAATGATGCTCAATAGGCTGTTCAAACGGTCAACTAAAGTCTCGGT CTTACATGTGGGATATGTGTGGAGGGTTTGATTTGAGAGTTCTGATGTCCTCACAGATGTTCATGCGTTAAGAGAATAAG AGTGGGTTCAATACCATGTTCCAAACTGTTGCATGGATTCAAAACAAAAATGTCTTGAAACGTGAGATTTCTGCATTTGC TGCTGTATTAGCATAGATTCAAAACAACCGTGTTCATCTTGCAACACTATAAAATCTAAACCGGTTCAAAACTAAAATCA CATAATAAAAGCTGATTCTTAAAATAAGAACTGGTTCACTGAACCATAACCAATGCGGTTCAATTCGGGTGACTCATAAT CAGTTCGGTTTGATTGACTTGTTTTTCCAATTTGGTTTGGTATAGTTTTCCATGATGAAACGAACTGTAACCAGGCCTCG GTCTTCAGCGAGGTGCATGCCATTGGTGCCTTGGGGGCATCTTTCTGGTTTCGGCTAGGCATATCTTTAGTGCCTCATAA TGTAGAATTTTGTTGACTCTATGAGATGGAGTGCGATTATGACTAACAGCATATACATGATGGAATATTATGGCAGTGTT TCATCCATGTGCCAACCTCACCTAGTGGGAAACGGCTTATTGTTGTTGTTGTTCTTGATCATGATAGCCAATCTAAAATA TCTGAGGCTAATTTTGTGATTTAAATCTCTTTATTTTTGATATTGCAGGTTCATGAAGAGCTTGTTCAGGCAATTAAAGA TGCAGAGGAAGGGCTTCTTCATCTAAAACGTGCAAGATTATTACAGGAAGTAGATTCTGTGCTGCATAACACTAATATGT TTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTAGAACCAGAGCCCCTGGAGGAAAAAAGCTATTCTATT GGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAGTAGCAAA GATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGGTATGTAAGATTATCATTTGGGTCAAGTGTGGCCATTTTATTT TTTACTTTGGTGACAAAAAGTATATTATGGTATTCTATCTACATTTTCAATACACTTTTCCTCCCCTTAGTTTTCCTCTA CTGTAACTAATTAGAAAATACAGAAATTTGAAATAACAACAGTTCATTCACATAAAGGAAAATAGGCAACACAGGCATAT GATAGGTATTGTGCTATATTTGTAATTTTCCTTGGTTTTATTTAGAAATAAAAAAGAATGCCAAAGGATAATGCTAGATA TGCTGTCTCCATACCCCCATGACCCTCACCCTACCGCTCCCCCCTCAAAATAAATAAATATATTATTAGCTACATGTTGT TATCGTTTTAAGAGGAATGTTTCAAGTGTTAGTCCTTGTTAGAGATATAAAAAAAAATTCATTCATGTGTTTTCCACCAA ACTCCTTAACCGAATCGTTGGTTCATGATAGCTTAAGCTCTTGTATTTGTTTTTGTTTTTCCCCATTTTCTGAGGATTCC TTATACTCTTTATTTTTGTATTGTTTTCTCTCTCTAATTCTTATTCAACTTCTCTTATCCAAAAAAATAGAAGTATGTTT CTAGGATTCATTTGAAATATATTACAATTGTGCAGTTATCTGAACACTTCTTCTCTATTTGATGTTACTAAAGTCCATAT TCTTCCTTTCACACTTTAAATCTGTTCCTTAGCAACCCATTCAACACATTGTTCATATGAGTGTCGTGTTAATATAGATT TGTAGTCCTGACACAGCTCATGAACACGCTTTTTATGTTATTTTCGGCTTTCAACTTTTTCTTGTGTCTGGATTACAAGA TACAAGAACAGATTATTTTAATTGAATTATTTGCAACTTTTATCATGAGTATTGTGTTTACATATCATTATATATTGCAT AATCAATACAAACCCTTTTTAAATGCATTCAGTTCTTAAATTAATAATAACTTGAAACAAATTACATGCAATAATTAAAA ATTAAGTTGTTTTTTAAAGGTTCCAATTACATTTACACCAATAAAATTTCCTAAGCAGTAAAAAGTGGAACTTAAAACGC CCTTCAATGTGGCATATAAATTTTCTATTTCTCCTTTGTATGTCTCTTTCTTCTTCCTTTCTCACCATTTTGATCATAGT TCTTCAGGGATTTCACAATAACCTCAACAGCCATTAATCGCCATATATGATGAAACTCAAGAAATATCATTCTTATTGAA CATCACATGTCTTTGTAGTGAGTGAAATGGAGTGGAACTTCCACTTATTTTAAGAAGTTTTCTTAGCTTTGTTATCCCTC AAAATTTGGGTTCCAGATTATGCTATAAAATCAATTGCTTTTCATCTCATTGTACTAATGCTAAAACACCGAAGTGCAGA TGTGCAAGTTCTTTTTACAACATCGATGTCGATTTGGTGCTAACTGTCGCCAATCGCATGGTAAGCCACTGTTATTGAGC AAATTGAACAGAGTTGGATAGAGGTGAAATCACTTGGACCCCATTGTAATTAACTTTTTCTCTAAACTCTAGTGACACTT GCATTTTCAAGTGCAGAAATCTGATGAACATTTGGAACCCTCTTTCCTTGATAAAGAATTTGTTGAATCATGTCTTTGTT CAGATTTTGGAAGCTAGTTCATTTGAATATACTCTAGGTTGGGGATCCAAGATTAATCACCTGATTATTAGATATGACTT AAGATATCAATTATCAACTTATTAAGGGGGTGATTTATACATTATGATATTTTTCCATTAGAAGATATAAACTTTATTTG GTATCAGAAAATATGTAGGTGGCTGGTGTTTTTTTTCACCCTGGGGAAGCTGGTATAATAATTCCTATCTACATCTACAT TTCGTTTTGATTCTTCCTGGGCTTTTATTTGACATTTTTCTTTTAAAATTTTTATGAAATGATAATCGTTCTTCTTGGGT GAAATTTATCCCAACTTCAGAATCACTTCCAGATACTTTACTAAGTTTCTCACACGGTTATAGGGTGTTTGGAAATGAGT TTTGCACACACTCCAAAGCACATCCAGTAGAAGCTATAATGGGGAATGTCCACTTTGACGGGTTTTCTGACCTCAATGTG GTGTGGTAACACAATACCAAAAGCCCACTTAGTTCTATTGTGTGATCAGAATCACTTCTAATGTTTATGGCAAACAAGAA CAATGGGGGAGCAGTCCGAGAAAATAAGCAGTAAAAACTTGCAGACTTAGTACTACTAATCCACTTGATTTTTTCTTTGG ACATTTCTATTTAGAGTATAAACTATAAAGGGTTAGAAGCCTTATAATCCCTCTTTTTCCAAGCTGATTTGAACTGTCGG TTTGGATGGTTTAGTATGTGACCTCAATATATCACTTGCCTATTTCCAATTATATGTGATTACTCCTTTACATAATCTAC TTGTGTTTTTTCTCCCATTTCAATGCTCGCTTATTTTATTTAGTATATAATACCTATCTACTATCTACATTACAGGAGTT GATGTTCAACTGTCCTCCCTCAAGAGATATGTCCCAACAATCTGGAAGCCATCCCTTGTGGGATCAAGTATATGGGCACT CTCAGATGCAAAAACAGGCATTTGGAGAGAAGCTGAGCTTGAGCTCTGGGATGAAAAAGCTGGAGTTGGACAAGTTGTTT TCAGAGACAGTGGAAGTTCTATGAAGCTTTGTGCAGAAGAAATAGTATTATCTGAGTATGCAGAAGTAAGCGACTTAGAG AGTGATTCCAGCTTAGAACAATCCGAGTCCAGTGACTACGATGAAGAGGAATCACAAGGTTTAGGATTTCTAGAGAGTAC CAACTTACAGAAAGGTATTCAAACCGACACTGCTTTGTTTGCTAAGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAA TGATGGCTAATATGGGTTTCCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGCTTGATCCGATACCTGTGAAG GTTCTGCCACCAAAGCAATCCTTAGATCATGCACTTGATTCTCGTAAAGGGGAAGAGAATAATGAGAAGCAAGGTAAGAA ACGGAGCCGAGGTGGTAAGAGAAAACGTGAAAAGAAATTCGCAGAAGCGAATCGCACAGCGAAAGAGGAAGAAGAATCAG CACCAGATGTCTTCACACTAATAAACAATCAACTGGCAATGCATGGTGAAGCTTCCAATGGTGGATCAATGAAGAAGCAG CAAAGTAAAGATTCAGGGGAAGTTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTATGAGGATGAGGTGAAGGGTTTGAA GATGAGGGTTGCAAAGCTTGAACAAATGGTGAATGCTAACAAAAAGGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAAT TAGTTGAAACCCGCAAGGCTTTGGCAGAGGCTGAATCAGTTCATGCCTCAGCCTCAAATACAGTTGTTGGCAAAGAAAAA GAGAAGAGATGGCTTAAGTTTTAGTAAGGACTTAGGACTCGGTTCTGTCTGTAGTAGCATAATATAATGCCTTCAATTTA TTGTAATGCTGATACTTTAAAAGAAGAAAAAAAGGAAAGGAAATTTACTGGGTTTAACTCAGCTAAGATATTAGGAGATT GCACTGTAGTATGTAGCCTTCTACATGTTATATTCTATCATGTTTGCTTTTTTACTGGTTGGTTGGTTTGCACTTTGCAC TGTTCTTTAGTCTTTGATTTGTCACTTACCTCCTTTACAAGGTTAAGGAGTTGGTTGGAATCTGATTTCTCACTTTTCAT TTGACATACTCATC
CDS sequence (LotjaGi6g1v0155100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCTCAGAAGAGAGGGTTCTTCTGGAGGAGCAATTGGAGCTTCAATTGCAGGAGCAAAGGGATTCCCTCTCTGC AATCGATGAAGCTCTTCTCTCTGATCCTACCAACTCCGAGCTCGTTGCGGTTCATGAAGAGCTTGTTCAGGCAATTAAAG ATGCAGAGGAAGGGCTTCTTCATCTAAAACGTGCAAGATTATTACAGGAAGTAGATTCTGTGCTGCATAACACTAATATG TTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTAGAACCAGAGCCCCTGGAGGAAAAAAGCTATTCTAT TGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAGTAGCAA AGATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACATCGATGTCGATTTGGTGCT AACTGTCGCCAATCGCATGGAGTTGATGTTCAACTGTCCTCCCTCAAGAGATATGTCCCAACAATCTGGAAGCCATCCCT TGTGGGATCAAGTATATGGGCACTCTCAGATGCAAAAACAGGCATTTGGAGAGAAGCTGAGCTTGAGCTCTGGGATGAAA AAGCTGGAGTTGGACAAGTTGTTTTCAGAGACAGTGGAAGTTCTATGAAGCTTTGTGCAGAAGAAATAGTATTATCTGAG TATGCAGAAGTAAGCGACTTAGAGAGTGATTCCAGCTTAGAACAATCCGAGTCCAGTGACTACGATGAAGAGGAATCACA AGGTTTAGGATTTCTAGAGAGTACCAACTTACAGAAAGGTATTCAAACCGACACTGCTTTGTTTGCTAAGTGGGAGAACC ACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGTTTCCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGA ATGCTTGATCCGATACCTGTGAAGGTTCTGCCACCAAAGCAATCCTTAGATCATGCACTTGATTCTCGTAAAGGGGAAGA GAATAATGAGAAGCAAGGTAAGAAACGGAGCCGAGGTGGTAAGAGAAAACGTGAAAAGAAATTCGCAGAAGCGAATCGCA CAGCGAAAGAGGAAGAAGAATCAGCACCAGATGTCTTCACACTAATAAACAATCAACTGGCAATGCATGGTGAAGCTTCC AATGGTGGATCAATGAAGAAGCAGCAAAGTAAAGATTCAGGGGAAGTTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTA TGAGGATGAGGTGAAGGGTTTGAAGATGAGGGTTGCAAAGCTTGAACAAATGGTGAATGCTAACAAAAAGGAGAAGGCTG TTTATGAGGCTGCTATGAGAAAATTAGTTGAAACCCGCAAGGCTTTGGCAGAGGCTGAATCAGTTCATGCCTCAGCCTCA AATACAGTTGTTGGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG
Protein sequence (LotjaGi6g1v0155100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSEERVLLEEQLELQLQEQRDSLSAIDEALLSDPTNSELVAVHEELVQAIKDAEEGLLHLKRARLLQEVDSVLHNTNM FTEEEKVEPLDPTDVEPEPLEEKSYSIGSKCRFRHKDGRWYNGQVVQLDNSVAKISFLTPTSENMLMCKFFLQHRCRFGA NCRQSHGVDVQLSSLKRYVPTIWKPSLVGSSIWALSDAKTGIWREAELELWDEKAGVGQVVFRDSGSSMKLCAEEIVLSE YAEVSDLESDSSLEQSESSDYDEEESQGLGFLESTNLQKGIQTDTALFAKWENHTRGIASKMMANMGFREGMGLGVTGQG MLDPIPVKVLPPKQSLDHALDSRKGEENNEKQGKKRSRGGKRKREKKFAEANRTAKEEEESAPDVFTLINNQLAMHGEAS NGGSMKKQQSKDSGEVKKVDRKVLVAYEDEVKGLKMRVAKLEQMVNANKKEKAVYEAAMRKLVETRKALAEAESVHASAS NTVVGKEKEKRWLKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 495 | 495 | 2.3E-243 | – | |
| Coils | 11 | 31 | 21 | - | – | |
| Coils | 45 | 65 | 21 | - | – | |
| Gene3D | 81 | 138 | 58 | 1.9E-5 | – | |
| Gene3D | 139 | 181 | 43 | 4.1E-5 | – | |
| ProSiteProfiles | 142 | 169 | 28 | 13.601 | ||
| MobiDBLite | 248 | 267 | 20 | - | – | |
| MobiDBLite | 253 | 267 | 15 | - | – | |
| SMART | 293 | 339 | 47 | 2.0E-12 | ||
| Pfam | 295 | 337 | 43 | 3.6E-11 | ||
| ProSiteProfiles | 295 | 351 | 57 | 12.647 | ||
| MobiDBLite | 339 | 381 | 43 | - | – | |
| MobiDBLite | 339 | 354 | 16 | - | – | |
| Coils | 361 | 381 | 21 | - | – | |
| MobiDBLite | 364 | 381 | 18 | - | – | |
| Coils | 424 | 475 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0155100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…