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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0156100 |
| Transcript ID | LotjaGi6g1v0156100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell differentiation protein rcd1, putative; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|A0A0A0K791|A0A0A0K791_CUCSA Uncharacterized protein; Found in the gene: LotjaGi6g1v0156100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43568635..43573848) extracted from Lotus japonicus Gifu genome v1.2.
GCTGATATGCTCAGTGACATGGCCAATTTGTCACAAGCATTCGGTGGCGGTGCCGGTGCTCCACCACCGCCACCTCCTCC TCCTCACGGTGGTCCCTCCTCATCCAACAAGATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCC GTGAAAATGCTCTTCTCGAACTCTCCAAGGTTAATCTAATCCTTTCCACTTTTCTCATAATCCGAGAATTGAATTTCACT GGAAAATTGGATTCACATTGAAGTTGAAATTGAAAATCCCCATTTGTTTCGTTTTTGATAATTGGGTGTTTAGGGTTTTA TTCAATTCATTCATGTTGGTAATCGATATCGATAGCTTGTGTTGGGTGGTACGAGGTTTATTGCAGTGTCTGGTGTTTTA GATAGCTGTTTTTTTTACCCCTGTTGTATTTGAAGTTCTGTTTCCATTGTTGGGTTTGCCACTGTACTTAAATTCTTTAT TGTTGCAATTATATCATGATTTGGCTTGGTTTCTCTTGCAACTGTTTGGTATTACTATTATTACTGCAGTCATAATGGTA CCTCATTTAATATTTGTCCTCATGTTTTTGGTTTTGTAGAAAAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAA TTCTTTTGGGACTATTGCTGCACTTTTGCAGGTATGCTATTTGGTTTGCTTTACATATCCCTTATGTGTAGTGCTTATAA AAAAAACTTGACTTGATCTTTCTTATGAATTTACTTTCTTAGCTTGTAAATTTTTTGGAGCTCAATGCACTTCCCTTTAG TCCTTATGCTTTGATTACCTATTACTCTGTTTTTTATCTGTTATATCTTTTGCTCAGATGTTGTTTTACTTGCTTCCAAG ATCCAACTTTTTCCTTGATTGAACTAACTTCTGATTTTCATAATTTGTCAAAACTGATTGATGATAGATTGAATTAAATG GTGATGGTGTGATTTAATTTATAACTTGTTTATATTTATCAGCATACTCCACGCACTGCATTTTGTTGAGTTTCTTGTCA TTTAATTTAATTTTGTATTTTATATCCTCAACATACTCTGTGAATTGCACATTCAGTTTCTCCTTTTTGAGTTTGTATTT TATATTCTGTATGAATTGATGTCCTTGAAAAAACTTAATTTCATTTCGACCTTTATGCATTGGATTTCCTTAGCTTGTTT TTTCGATGACATGATTCCTCTCAGTTGTCTTCCACTTACTCGGGTTTGATATTTTATTCTCTCAGGAAATAGTTTCTATA TACCCTGTCCTTTCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGTGTGCAATGCTCTTGCTCTTCTTCAGGTTAG ATGAGTGTGTGCTATTAAGTTGTGTTCAACATTTTAAGGTTACATACATTTTAACTTCATTTTAAGGTTGTATCATATTT TAAATCACCAACACTATGCAATTTGGGCTTTGATATTGTTTTTTAACAAATATTTATATAAAAATGTTGAGGACGTATAA CCCACAGAAAAGGCAGACACTATTGTGCAGTCTTTTTATGGTTTCTTATTCTGAAAATTAAGCCATAAATATTATACTTT TGTTTCCTTTTCTTCTTTTGAGACATGTCACAAAGAAAATGTTTTCAGATTATGCTTCTAACTGTTCTCCTCATGATTTT CTTGCAGTGTGTGGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGGTAATGTCACTTTCCTCATTCATATGAAGG ACTTTGAACTTTCATCTGATTTTGTACTTATCACCTTTGCACTATATGTTTTGATTGTGGTTGGACTAAACTGTTCAAAA TAAGCTTTTTATATTTGCTCAAGTTGTGTGGCAAATGCTATCAGCTTCTTTAGATTTTGTTGATGCTATGCAGGTAATAA AATGAATTGAAAAAATTACTCTCCTAATAACATAATGAACTAATATTTACGATTATTTACCCTAACTAACTATATATCCT AATAACATCCAGAATTGATATAATATCTATTTAATAACGTAAAATATATCTTAATAATTAATACTCCTAATAATAGAATG GATAGCTTTAATGCCCTTACTTTTTCCTTGTATAAACCAGTGTTATCAAATGACGGCCATAGCGGTATGGCGTGACAGAT CAACGGCGAACTGCCATGAAAAGTGCATGGCGTGGCGGATTGTTCATGGCGGGCTCATATGGCCTGGCTCATGCCTGTTC AAAACATGACCCAAACAACTGTAAAACCCTAATTTTTTGAAGAGGCAGCCCCTGTTCTCTTTTTTCTTTCTCATTTGAAA CCTGCCTCTGTTCTGTCCAGCCATACTCCCTCCCCATCAAGCTCTCATCCTCATCCGATCCGGTGGCACTTGACGGACTC TGGGCAACACCCCTCCGTAAGGCCTCTGCTTTTTTTGTTTTTTCCTCCCTTGACCCTTTCTCCTTTTTGTCCATGAGTTC ACCCATAAGATAAGCTATTAGAGTATTATATGTATCGTATATTTAGTGGTTAAATGGTTGTTTTGTAGTTCTTTTTGCAA AGTATGATTTATTTATTTATTCTTGGAACTGATCAGTTAGTTTTAGCCTCTTAGCCTTTCTTATATTGATAGCTAAGCAT TAGTAACTGATTGATTACCACTCATTGCATGAAGGCTTCTCTTCAAAATCTTATTGTAATCAGAATTCATTCTGCACAAA TCTGAGTTTCTCCAAATCAAATCTCTCTCTCTCTTTCTATCATTCTAGTTTCCAAACACAAGGCAAGTTGATGAGCTCAG TCATAGACTGCATATGTACTCAGGATTTAAGGACTGCTGAAGTTCTTCCATCCAATAAATAGCATCTAGGAGTAAAAGTG AACATTATAAATGCTGCTTGTACATACTTGTTATTGTCTTTTCCATCTTAGGAGTTTTCCTATGTTGCTTGAATATGGAG TTTCATTCTCCTATTTTGAGGTCACCATATCTGATTCTCTTTTTTAGTAGTCATACCCTTGTTGCTGTTAGATTTTTTAC TTCCAAGATCTATACAGTATACAGTACACTAGTAAGCCTCTTAAGCAAGAAGCATTTGGATTGTATATTAATTTTTTTAT GTTGAATCCTTGGAGATTGCTTTGACATTACAAAATCCTTTGTGTTTTTTTTTTCTTTTTCATGTTAATGTATATAGTCC ATTTAGTGTTTCATATTTGGATAACTTTTTTTGATCGGCCATGATATTTGGATAATGAACCGTTGCACTTGTTTTTCTCC TCTGCAGCTCATATCCCTCTGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCT CACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTACGTATTCCTTGCTGATTCTGCTGTTGGATGCAAATAACTACTA GAAAAAAAACTCTGAAGGCGATATTGATGTTGCAAAAATGTTTTTAATCACTATTATTGCAAAAGCAAAACTGTCAAAAA GATTTGCCAAAAATCCTTGACCGTTGACACAAAAATCTTTATGTGATGGAGTGAAAATCCAACTTGTTTGGATGATTTCA TCACTCATCACTATTGTTAAGGAACAAGTTAAAGTCTCCAACTATTAGTTACATGTTTTTTTGGGTTCTATTTTTGTCAT TCATGTATTACCAACTAGTGGTTTGTCAATTGTAACAATTTTCTGGCAATATTTTATTGACCAGGTTGATGATACGGAGG TCATAAGTTTTCTTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCACCATGGAAATGGGCAGTGAACTGTCAAAAACA GTGAGTTCATTGATTTTTGATTTTTATTCTTGGGTCATCTTATGCAAACACAATATTTTCTTCATATTTCTGAGTCACAT TTTTCTGTTGTTTGTTTAATTGTGCTAGGCTTACGTATGATTTATCTGTATATGCATGCATTACTTGATTAATGCGTTAT GCGATAGCGAAAGATAAGTTGACATTTGAACCTTTACTTGAGGAGTCTGCTTTTGTGATTCTTGTTTTTTACCTTTTGAG TAGTTGATAACATCAGCTTTTAGATGTGGTCATGGAACTGTTTGAGCTTTTCCTGGCATATTTTTATTGATATGTAATTT GAGCACAGATATCTATACAGTGTGGGTTAAAAATTCAAATCCAGTTCGTGATTTTCTAGTTAAATCATTAACTCACTTGA TTGTCTTATATCGCCACTCTCATGAATCCTCCTGTGTGTATATCAAATAAACGTTAAACTGAGCATGGTTCCTCTAATGG AAGTTCTACCGGAACAGGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGGATTATATTTGCACT ACAGCAGAGCGTTTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAGCAATCAACTCGTCT GCTGAAACATATCATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGTTGGTGAATAGTGTGTAACTCCATGCTAGTG CTTTCTCCTTCCATGCCCTAGTCCTTTTTCTTTTCAAGTTTCAAATATCATCTCTGATATGACTTTGATTTGGTTAAAAC AGGGCTTGTGATGCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTCAGCAGTTGCCTTCGTGTAAGTAC TTGTGATATTAATTTGTAATCAATGGAGTGGAGTGGCAAGAGGGTGAGCCTCGGCGCAACGGTAAAGTTGCTGCCATGTG ACTTTGTGGTCACAGGTCCAAACTGTGGAATCAGCCTCTTGCAGTAATGGTAGGTAAGACTGGTTACATTAGATCCACAA AGTGGGTCTGGGCCCTCCCTAGAACTTGCTCATAGTGGGAGCTTTATAGCACTAGGTTTACCCTTATTTTTGGAGTTGAA GAGAAGGTTGGTAACTAGAAAAGTCCATCGGGTTCTCCAAATCTTCAATTTCAGAGCTAGAGATTTTCCATTGGCCCTCA TATAGGAGATAATCCATGCTTTTAGTTTGTTTTACATTTTCTGATATCTTGGTTTAATTTATTCAGGAGGACACCACAAC TAGGAGGTGGCTACAGCAACTGCTTCACAATGTTGGATCAGGTCGGGTCCCTGCAATGCAAGCTGGAGGTTTCGATCATA TAATGGTAAACTGA
CDS sequence (LotjaGi6g1v0156100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAGTGACATGGCCAATTTGTCACAAGCATTCGGTGGCGGTGCCGGTGCTCCACCACCGCCACCTCCTCCTCCTCA CGGTGGTCCCTCCTCATCCAACAAGATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCCGTGAAA ATGCTCTTCTCGAACTCTCCAAGAAAAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAATTCTTTTGGGACTATT GCTGCACTTTTGCAGGAAATAGTTTCTATATACCCTGTCCTTTCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGT GTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGCTCATATCCCTC TGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCTCACCAGTCTTGGTGTCATT GGTGCATTGGTGAAGGTTGATGATACGGAGGTCATAAGTTTTCTTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCAC CATGGAAATGGGCAGTGAACTGTCAAAAACAGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGG ATTATATTTGCACTACAGCAGAGCGTTTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAG CAATCAACTCGTCTGCTGAAACATATCATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGGCTTGTGATGCATTAAG AAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTCAGCAGTTGCCTTCGTGAGGACACCACAACTAGGAGGTGGCTAC AGCAACTGCTTCACAATGTTGGATCAGGTCGGGTCCCTGCAATGCAAGCTGGAGGTTTCGATCATATAATGGTAAACTGA
Protein sequence (LotjaGi6g1v0156100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSDMANLSQAFGGGAGAPPPPPPPPHGGPSSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTI AALLQEIVSIYPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQ QSTRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDTTTRRWLQQLLHNVGSGRVPAMQAGGFDHIMVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| MobiDBLite | 16 | 30 | 15 | - | – | |
| Gene3D | 31 | 301 | 271 | 4.1E-139 | ||
| PANTHER | 32 | 305 | 274 | 5.5E-162 | – | |
| PANTHER | 32 | 305 | 274 | 5.5E-162 | ||
| Pfam | 42 | 300 | 259 | 1.7E-130 | – | |
| SUPERFAMILY | 44 | 276 | 233 | 1.06E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi6g1v0156100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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