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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0156100 |
| Transcript ID | LotjaGi6g1v0156100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell differentiation protein RCD1 like; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|A0A0V0HQC0|A0A0V0HQC0_SOLCH Putative cell differentiation protein RCD1-like; Found in the gene: LotjaGi6g1v0156100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43568727..43573848) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTCCTCATCCAACAAGATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCCGTGAAAATGCTC TTCTCGAACTCTCCAAGGTTAATCTAATCCTTTCCACTTTTCTCATAATCCGAGAATTGAATTTCACTGGAAAATTGGAT TCACATTGAAGTTGAAATTGAAAATCCCCATTTGTTTCGTTTTTGATAATTGGGTGTTTAGGGTTTTATTCAATTCATTC ATGTTGGTAATCGATATCGATAGCTTGTGTTGGGTGGTACGAGGTTTATTGCAGTGTCTGGTGTTTTAGATAGCTGTTTT TTTTACCCCTGTTGTATTTGAAGTTCTGTTTCCATTGTTGGGTTTGCCACTGTACTTAAATTCTTTATTGTTGCAATTAT ATCATGATTTGGCTTGGTTTCTCTTGCAACTGTTTGGTATTACTATTATTACTGCAGTCATAATGGTACCTCATTTAATA TTTGTCCTCATGTTTTTGGTTTTGTAGAAAAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAATTCTTTTGGGAC TATTGCTGCACTTTTGCAGGTATGCTATTTGGTTTGCTTTACATATCCCTTATGTGTAGTGCTTATAAAAAAAACTTGAC TTGATCTTTCTTATGAATTTACTTTCTTAGCTTGTAAATTTTTTGGAGCTCAATGCACTTCCCTTTAGTCCTTATGCTTT GATTACCTATTACTCTGTTTTTTATCTGTTATATCTTTTGCTCAGATGTTGTTTTACTTGCTTCCAAGATCCAACTTTTT CCTTGATTGAACTAACTTCTGATTTTCATAATTTGTCAAAACTGATTGATGATAGATTGAATTAAATGGTGATGGTGTGA TTTAATTTATAACTTGTTTATATTTATCAGCATACTCCACGCACTGCATTTTGTTGAGTTTCTTGTCATTTAATTTAATT TTGTATTTTATATCCTCAACATACTCTGTGAATTGCACATTCAGTTTCTCCTTTTTGAGTTTGTATTTTATATTCTGTAT GAATTGATGTCCTTGAAAAAACTTAATTTCATTTCGACCTTTATGCATTGGATTTCCTTAGCTTGTTTTTTCGATGACAT GATTCCTCTCAGTTGTCTTCCACTTACTCGGGTTTGATATTTTATTCTCTCAGGAAATAGTTTCTATATACCCTGTCCTT TCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGTGTGCAATGCTCTTGCTCTTCTTCAGGTTAGATGAGTGTGTGC TATTAAGTTGTGTTCAACATTTTAAGGTTACATACATTTTAACTTCATTTTAAGGTTGTATCATATTTTAAATCACCAAC ACTATGCAATTTGGGCTTTGATATTGTTTTTTAACAAATATTTATATAAAAATGTTGAGGACGTATAACCCACAGAAAAG GCAGACACTATTGTGCAGTCTTTTTATGGTTTCTTATTCTGAAAATTAAGCCATAAATATTATACTTTTGTTTCCTTTTC TTCTTTTGAGACATGTCACAAAGAAAATGTTTTCAGATTATGCTTCTAACTGTTCTCCTCATGATTTTCTTGCAGTGTGT GGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGGTAATGTCACTTTCCTCATTCATATGAAGGACTTTGAACTTT CATCTGATTTTGTACTTATCACCTTTGCACTATATGTTTTGATTGTGGTTGGACTAAACTGTTCAAAATAAGCTTTTTAT ATTTGCTCAAGTTGTGTGGCAAATGCTATCAGCTTCTTTAGATTTTGTTGATGCTATGCAGGTAATAAAATGAATTGAAA AAATTACTCTCCTAATAACATAATGAACTAATATTTACGATTATTTACCCTAACTAACTATATATCCTAATAACATCCAG AATTGATATAATATCTATTTAATAACGTAAAATATATCTTAATAATTAATACTCCTAATAATAGAATGGATAGCTTTAAT GCCCTTACTTTTTCCTTGTATAAACCAGTGTTATCAAATGACGGCCATAGCGGTATGGCGTGACAGATCAACGGCGAACT GCCATGAAAAGTGCATGGCGTGGCGGATTGTTCATGGCGGGCTCATATGGCCTGGCTCATGCCTGTTCAAAACATGACCC AAACAACTGTAAAACCCTAATTTTTTGAAGAGGCAGCCCCTGTTCTCTTTTTTCTTTCTCATTTGAAACCTGCCTCTGTT CTGTCCAGCCATACTCCCTCCCCATCAAGCTCTCATCCTCATCCGATCCGGTGGCACTTGACGGACTCTGGGCAACACCC CTCCGTAAGGCCTCTGCTTTTTTTGTTTTTTCCTCCCTTGACCCTTTCTCCTTTTTGTCCATGAGTTCACCCATAAGATA AGCTATTAGAGTATTATATGTATCGTATATTTAGTGGTTAAATGGTTGTTTTGTAGTTCTTTTTGCAAAGTATGATTTAT TTATTTATTCTTGGAACTGATCAGTTAGTTTTAGCCTCTTAGCCTTTCTTATATTGATAGCTAAGCATTAGTAACTGATT GATTACCACTCATTGCATGAAGGCTTCTCTTCAAAATCTTATTGTAATCAGAATTCATTCTGCACAAATCTGAGTTTCTC CAAATCAAATCTCTCTCTCTCTTTCTATCATTCTAGTTTCCAAACACAAGGCAAGTTGATGAGCTCAGTCATAGACTGCA TATGTACTCAGGATTTAAGGACTGCTGAAGTTCTTCCATCCAATAAATAGCATCTAGGAGTAAAAGTGAACATTATAAAT GCTGCTTGTACATACTTGTTATTGTCTTTTCCATCTTAGGAGTTTTCCTATGTTGCTTGAATATGGAGTTTCATTCTCCT ATTTTGAGGTCACCATATCTGATTCTCTTTTTTAGTAGTCATACCCTTGTTGCTGTTAGATTTTTTACTTCCAAGATCTA TACAGTATACAGTACACTAGTAAGCCTCTTAAGCAAGAAGCATTTGGATTGTATATTAATTTTTTTATGTTGAATCCTTG GAGATTGCTTTGACATTACAAAATCCTTTGTGTTTTTTTTTTCTTTTTCATGTTAATGTATATAGTCCATTTAGTGTTTC ATATTTGGATAACTTTTTTTGATCGGCCATGATATTTGGATAATGAACCGTTGCACTTGTTTTTCTCCTCTGCAGCTCAT ATCCCTCTGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCTCACCAGTCTTGG TGTCATTGGTGCATTGGTGAAGGTACGTATTCCTTGCTGATTCTGCTGTTGGATGCAAATAACTACTAGAAAAAAAACTC TGAAGGCGATATTGATGTTGCAAAAATGTTTTTAATCACTATTATTGCAAAAGCAAAACTGTCAAAAAGATTTGCCAAAA ATCCTTGACCGTTGACACAAAAATCTTTATGTGATGGAGTGAAAATCCAACTTGTTTGGATGATTTCATCACTCATCACT ATTGTTAAGGAACAAGTTAAAGTCTCCAACTATTAGTTACATGTTTTTTTGGGTTCTATTTTTGTCATTCATGTATTACC AACTAGTGGTTTGTCAATTGTAACAATTTTCTGGCAATATTTTATTGACCAGGTTGATGATACGGAGGTCATAAGTTTTC TTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCACCATGGAAATGGGCAGTGAACTGTCAAAAACAGTGAGTTCATTG ATTTTTGATTTTTATTCTTGGGTCATCTTATGCAAACACAATATTTTCTTCATATTTCTGAGTCACATTTTTCTGTTGTT TGTTTAATTGTGCTAGGCTTACGTATGATTTATCTGTATATGCATGCATTACTTGATTAATGCGTTATGCGATAGCGAAA GATAAGTTGACATTTGAACCTTTACTTGAGGAGTCTGCTTTTGTGATTCTTGTTTTTTACCTTTTGAGTAGTTGATAACA TCAGCTTTTAGATGTGGTCATGGAACTGTTTGAGCTTTTCCTGGCATATTTTTATTGATATGTAATTTGAGCACAGATAT CTATACAGTGTGGGTTAAAAATTCAAATCCAGTTCGTGATTTTCTAGTTAAATCATTAACTCACTTGATTGTCTTATATC GCCACTCTCATGAATCCTCCTGTGTGTATATCAAATAAACGTTAAACTGAGCATGGTTCCTCTAATGGAAGTTCTACCGG AACAGGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGGATTATATTTGCACTACAGCAGAGCGT TTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAGCAATCAACTCGTCTGCTGAAACATAT CATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGTTGGTGAATAGTGTGTAACTCCATGCTAGTGCTTTCTCCTTCC ATGCCCTAGTCCTTTTTCTTTTCAAGTTTCAAATATCATCTCTGATATGACTTTGATTTGGTTAAAACAGGGCTTGTGAT GCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTCAGCAGTTGCCTTCGTGTAAGTACTTGTGATATTAA TTTGTAATCAATGGAGTGGAGTGGCAAGAGGGTGAGCCTCGGCGCAACGGTAAAGTTGCTGCCATGTGACTTTGTGGTCA CAGGTCCAAACTGTGGAATCAGCCTCTTGCAGTAATGGTAGGTAAGACTGGTTACATTAGATCCACAAAGTGGGTCTGGG CCCTCCCTAGAACTTGCTCATAGTGGGAGCTTTATAGCACTAGGTTTACCCTTATTTTTGGAGTTGAAGAGAAGGTTGGT AACTAGAAAAGTCCATCGGGTTCTCCAAATCTTCAATTTCAGAGCTAGAGATTTTCCATTGGCCCTCATATAGGAGATAA TCCATGCTTTTAGTTTGTTTTACATTTTCTGATATCTTGGTTTAATTTATTCAGGAGGACACCACAACTAGGAGGTGGCT ACAGCAACTGCTTCACAATGTTGGATCAGGTCGGGTCCCTGCAATGCAAGCTGGAGGTTTCGATCATATAATGGTAAACT GA
CDS sequence (LotjaGi6g1v0156100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGTGCGGAGCAGCTTGTCCTTGAACTCAGCAACCCTGATCTCCGTGAAAATGCTCTTCTCGAACTCTCCAAGAA AAGGGAGCTGTTTCAAGATCTTGCTCCATTGTTATGGAATTCTTTTGGGACTATTGCTGCACTTTTGCAGGAAATAGTTT CTATATACCCTGTCCTTTCACCACCCACTCTTACTCCAGCGCAATCAAATCGGGTGTGCAATGCTCTTGCTCTTCTTCAG TGTGTGGCGTCTCACCCTGATACAAGGATGCAATTCCTCAATGCTCATATCCCTCTGTATCTGTATCCTTTCCTTAATAC AACAAGCAAGTCAAGACCATTTGAGTACCTGAGGCTCACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTTGATGATA CGGAGGTCATAAGTTTTCTTCTTTCAACTGAGATAATTCCTCTTTGCCTGCGCACCATGGAAATGGGCAGTGAACTGTCA AAAACAGTTGCAACATTTATTGTTCAAAAGATTCTGTTGGATGATGTGGGCTTGGATTATATTTGCACTACAGCAGAGCG TTTTTTCGCAGTAGGTCGAGTTTTAGGGAACATGGTGGGAGCTCTTGCTGAGCAGCAATCAACTCGTCTGCTGAAACATA TCATTCGATGCTATCTTCGCCTTTCTGATAATCCAAGGTTGGTGAGGCTTGTGATGCATTAA
Protein sequence (LotjaGi6g1v0156100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPTLTPAQSNRVCNALALLQ CVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELS KTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRLVRLVMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 233 | 232 | 5.3E-121 | ||
| PANTHER | 3 | 227 | 225 | 4.7E-139 | – | |
| PANTHER | 3 | 227 | 225 | 4.7E-139 | ||
| Pfam | 7 | 227 | 221 | 7.1E-114 | – | |
| SUPERFAMILY | 9 | 175 | 167 | 2.97E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi6g1v0156100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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