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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0161800 |
| Transcript ID | LotjaGi6g1v0161800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT2G30900.1 TRICHOME BIREFRINGENCE-LIKE 43; Swiss-Prot: sp|Q6DR10|TBL43_ARATH Protein trichome birefringence-like 43; TrEMBL-Plants: tr|I3TAR2|I3TAR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0161800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:44547477..44549127) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATTCATCTACAACATCAGGAGGAAACACAGCACACATATTGTGAGCTTCTCCACCCTGACCATGAGGTGTTTCAC CATATCTGCTGTGTTATTTCTTGCCCTTCTGATTCAGATACATGGGAAGGATGATGATGATCTTAATTACCAGAAGCTGC AGGAGGCAACAGAAACAGGGGTAGGAAAGAGTGGCTGTGATTTGTTTGAGGGGCAATGGGTTTATGATGATTCATATCCA CTTTATGAATCCTCACTCTGTCCCTTTATAGAGAAGCAGTTTGATTGCCAAAAGAATGGAAGACCAGATAAATTCTATCA AAAGTATAGATGGCAACCCACAGGGTGCAACTTAACAAAGTACATACATGCACATGCACATCCTCTATTAATTTGCTCCT TTTTTATTATTCATTGTACAAGTTATTTTATTTTATATTTTTATCAGTGCTCCATGCCATTTGATTATTAATAGGTGAGG ACTGAAATTTGTTCTTGTTGTACAGATTCAATGCTGAAGATTTCTTAACAAGATTCAGAGGGAAGAGTATCATGTTTGTG GGGGACTCTTTGAGTTTGAATCAATGGCAATCACTCACTTGCATGCTCCACACAGCTCTGCCACATGCCCACTATACCTT AGTCAGGAAGGGAGGTCTCTCCATTTTCACCTTCACGGTTAGATTAGTCTTGCACATCCTCTATTTATTAGTCTTGATTT GATTTATAACAATGATGGATTAATTTTCAAACTAGGTCTAGAAACATGTTTCAGTGACAATCTTAACTTGGGGTACAATT ATTCAGTCACATACCACATAAATTTAACTTATTCTTGTGAATCACATGATTTGCAGGCCTATGATGTTAAGCTGATGTTC TCACGCAATGCATTCCTGGTGGACATTGTTGGTGAACGTATTGGTCGAGTGATGAAACTAGATTCTATTGAAGCTGGGAA ATTATGGAAAGACAAGGATGTATTGATATTTGACTCTTGGCATTGGTGGCTTCACACAGGAAGAAAACAAGCGTATGTAT ATATAGGCTACACACACTTTTTAATATTCTGTTTCACATAATGCGAACTTTAATTACATCAATTTTCTTCCTCTTATGTA TGCTCTATGCAGATGGGATTTCATTCAAGAAGGGAATAAACCATTAATCAAAGATACGGATCGGTTGGTGTTATATGAGA AAGCATTGAATACATGGGCAAAGTGGGTTGATCAAAATGTTGATCCTACTAAAACAAGGGTACTCTTCCAAGGAGTTTCT CCAGATCATGCAAATGCAGGGCAATGGGGAGAGTCAGGAGCAAACTCATCTTGTGTAGGGGAATCTAGGCCATTGTTGGG ATTCAACTATCCAGGAGGTCCACACCCAGCAGAGTTGGTATTAGAGAAAGTGTTGGGAGGCATGAAAAAGCCAGTGCATT TGCTCAACATTACTACCCTATCACAACTGAGGAAAGATGCTCACCCCTCTGTATATGGATTTGGAGGACATAGGAATGCT GATTGCAGCCACTGGTGCCTAGCTGGTGTTCCTGATACTTGGAACCTGCTTTTATATGCAACTCTCATTCAAAATTAATT TTAATTCTTAAATGAATTTTGTCCCTCACAAACATGTATTTCTAGTTCAAG
CDS sequence (LotjaGi6g1v0161800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTGTTTCACCATATCTGCTGTGTTATTTCTTGCCCTTCTGATTCAGATACATGGGAAGGATGATGATGATCTTAA TTACCAGAAGCTGCAGGAGGCAACAGAAACAGGGGTAGGAAAGAGTGGCTGTGATTTGTTTGAGGGGCAATGGGTTTATG ATGATTCATATCCACTTTATGAATCCTCACTCTGTCCCTTTATAGAGAAGCAGTTTGATTGCCAAAAGAATGGAAGACCA GATAAATTCTATCAAAAGTATAGATGGCAACCCACAGGGTGCAACTTAACAAAATTCAATGCTGAAGATTTCTTAACAAG ATTCAGAGGGAAGAGTATCATGTTTGTGGGGGACTCTTTGAGTTTGAATCAATGGCAATCACTCACTTGCATGCTCCACA CAGCTCTGCCACATGCCCACTATACCTTAGTCAGGAAGGGAGGTCTCTCCATTTTCACCTTCACGGCCTATGATGTTAAG CTGATGTTCTCACGCAATGCATTCCTGGTGGACATTGTTGGTGAACGTATTGGTCGAGTGATGAAACTAGATTCTATTGA AGCTGGGAAATTATGGAAAGACAAGGATGTATTGATATTTGACTCTTGGCATTGGTGGCTTCACACAGGAAGAAAACAAG CATGGGATTTCATTCAAGAAGGGAATAAACCATTAATCAAAGATACGGATCGGTTGGTGTTATATGAGAAAGCATTGAAT ACATGGGCAAAGTGGGTTGATCAAAATGTTGATCCTACTAAAACAAGGGTACTCTTCCAAGGAGTTTCTCCAGATCATGC AAATGCAGGGCAATGGGGAGAGTCAGGAGCAAACTCATCTTGTGTAGGGGAATCTAGGCCATTGTTGGGATTCAACTATC CAGGAGGTCCACACCCAGCAGAGTTGGTATTAGAGAAAGTGTTGGGAGGCATGAAAAAGCCAGTGCATTTGCTCAACATT ACTACCCTATCACAACTGAGGAAAGATGCTCACCCCTCTGTATATGGATTTGGAGGACATAGGAATGCTGATTGCAGCCA CTGGTGCCTAGCTGGTGTTCCTGATACTTGGAACCTGCTTTTATATGCAACTCTCATTCAAAATTAA
Protein sequence (LotjaGi6g1v0161800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCFTISAVLFLALLIQIHGKDDDDLNYQKLQEATETGVGKSGCDLFEGQWVYDDSYPLYESSLCPFIEKQFDCQKNGRP DKFYQKYRWQPTGCNLTKFNAEDFLTRFRGKSIMFVGDSLSLNQWQSLTCMLHTALPHAHYTLVRKGGLSIFTFTAYDVK LMFSRNAFLVDIVGERIGRVMKLDSIEAGKLWKDKDVLIFDSWHWWLHTGRKQAWDFIQEGNKPLIKDTDRLVLYEKALN TWAKWVDQNVDPTKTRVLFQGVSPDHANAGQWGESGANSSCVGESRPLLGFNYPGGPHPAELVLEKVLGGMKKPVHLLNI TTLSQLRKDAHPSVYGFGGHRNADCSHWCLAGVPDTWNLLLYATLIQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 16 | 14 | - | – | |
| PANTHER | 5 | 366 | 362 | 2.5E-180 | ||
| PANTHER | 5 | 366 | 362 | 2.5E-180 | – | |
| Phobius | 17 | 20 | 4 | - | – | |
| Phobius | 21 | 368 | 348 | - | – | |
| Pfam | 43 | 95 | 53 | 6.7E-24 | ||
| Pfam | 96 | 363 | 268 | 2.4E-86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0161800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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