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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0162700 |
| Transcript ID | LotjaGi6g1v0162700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9V8L9|A0A0L9V8L9_PHAAN Tryptophan synthase; Found in the gene: LotjaGi6g1v0162700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:44645645..44647330) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGACTTTTCCATGAATTTGTTGATGACAAAGATGTTAGGCTAATTGGTGTGGAGGCTGCTGGATTTGGCCTGGACAG TGGCAAGCATGCTGCGACATTAACGAAGGGAGAAGTTGGGGTTTTGCATGGAGCTATGAGCTATTTGCTTCAGGATGATG ATGGCCAAATAGTCGAGCCTCACTCTATCAGTGCAGGGTAATTAATCTGACTGATCATTTGTTATCGGGTTTCTTATGTC TGCTCAGATTCTGCCTGTTCTGATTGTGTAATTATGCTTTGAAAAAATTATGCAGCTTGGACTACCCTGGCGTTGGACCT GAACATAGCTTTTTGAAGGATTTAGGGCGTGCTGAATATTATAGCATCACTGATGAAGAAGCATTGGAAGGTAGCCCTTG AGCTTGTTGCTTTCATATAACACATGATTGCACACAGTGACGGATCCAGAAATTTTATGCAGTGAGGGCAGTATATACAT ATAAATTCGTAATAAAAAAAATTAACATATGCTATTAGAAGTGAGGACATATTTTACCAAAATAGACACACGTGAAAACA TTTTTTACCAAAGGGGCCACCAAAAATCACATATTTTTACTACTGAAGTGAGAGCATTTAACAATGTGAGATACAAGTGA GGGCATTTAGCAATGTAAAACATAAGTGAGGGCAATTTTTATCTAAGAAATTACAAAAAACCGCATACTTTTACTACTCA ATTTTTTTTCTAATGCATTTTTTCATATTCAAGTGAGGGCACTTGCCCTCATACTTGTCTACATAGATCCGTCACTGATT GCACATTTGGATGAAAAATGTTTTGTATGAAGTGAAAATTGCATGTATCTTGAGTTTTAGTTGTCATGATTTATGTCTCT GCCTCCTTTGCTTTCGCATACTGATTTTGTTCAATTGTGCTTTATAATTGCTTAGAGATTCTATTATATGAGAATGGTAA CTCTCATTTCCTCACTTTTTCAAATGTTTTATGGTGTCTTATGATCCATGTAACTTACCCCTTCTAGTTGGAAAAGGCTT GGTGTTGGTTTTTGTTGTATTCCAGTAGTCTTGGCTCTTGAGTCTTGACTAAGTCTTCCCTTTTGTTTGCCTTGTCACTT TATTCTGCATAAATTTTACATAGACTAATGTTTGCATTGCAGTCACAAATCCAAGCTGTTCAATTATGACCAGACGATTC ACATGTTTAACATCTAAATTATTGTGATCATACTGCATGAATGTAGTAACTCGTCAAAAAGGGACTGCAGTGAATCAAGT TCTGTTTTCTTCTTATGTGTTTCTATCTCATGTTTGGATGTTTTGTGTGTTATGATCCATGTCACAAATCCAAGCCGTTC AATTATGACCTGACGGCTCATATGTTTAACATCTAAATTATTGAGGTCATATTGCATGAATGTAGTAACTCGTCAAAAAG GGGCTGCAGTGAATCAAGTTCCGTTTTCTTATGTGGTTCTATCTCATGTTTGGATGTTTTGTATGTGTAGCTTTCAAGAG AGTTTCACGACTTGAAGGCATAATTCCAGCTCTGGAGACATCTCATGCGTTGGCATACCTAGAGAAAGTGTGTCCAACCC TTCCTAATGGAACCAAGGTTGTGCTTAACTTCAGTGGCCGAGGTGATAAGGATGTTCAAACTGCTATCAAGTACTTGAAG GTTTGA
CDS sequence (LotjaGi6g1v0162700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACTTTTCCATGAATTTGTTGATGACAAAGATGTTAGGCTAATTGGTGTGGAGGCTGCTGGATTTGGCCTGGACAG TGGCAAGCATGCTGCGACATTAACGAAGGGAGAAGTTGGGGTTTTGCATGGAGCTATGAGCTATTTGCTTCAGGATGATG ATGGCCAAATAGTCGAGCCTCACTCTATCAGTGCAGGCTTGGACTACCCTGGCGTTGGACCTGAACATAGCTTTTTGAAG GATTTAGGGCGTGCTGAATATTATAGCATCACTGATGAAGAAGCATTGGAAGCTTTCAAGAGAGTTTCACGACTTGAAGG CATAATTCCAGCTCTGGAGACATCTCATGCGTTGGCATACCTAGAGAAAGTGTGTCCAACCCTTCCTAATGGAACCAAGG TTGTGCTTAACTTCAGTGGCCGAGGTGATAAGGATGTTCAAACTGCTATCAAGTACTTGAAGGTTTGA
Protein sequence (LotjaGi6g1v0162700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLK DLGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKVCPTLPNGTKVVLNFSGRGDKDVQTAIKYLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 8.9E-103 | – | |
| PANTHER | 1 | 155 | 155 | 8.9E-103 | ||
| SUPERFAMILY | 1 | 153 | 153 | 1.44E-50 | ||
| Gene3D | 1 | 155 | 155 | 9.9E-73 | ||
| Pfam | 9 | 140 | 132 | 3.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Tryptophan synthase activity | Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. | ||
| Biological process | Tryptophan metabolic process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. |
Expression pattern of LotjaGi6g1v0162700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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