Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0004834

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Tryptophan synthase activity
Full defintion Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
Subterm of

Relationships

The relationship of GO:0004834 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0004834, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
RHEA10532

Associated Lotus transcripts 13

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0362709.1
– PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cicer arietinum] gi|502128685|ref|XP_004500046.1|
GO terms
3
Lj1g3v4450430.1
– PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Glycine max] gi|356572236|ref|XP_003554276.1|
GO terms
2
Lj3g3v2780540.1
– PREDICTED: LOW QUALITY PROTEIN: tryptophan synthase beta chain 2-like [Cicer arietinum] gi|502148742|ref|XP_004507251.1|
GO terms
4
Lj6g3v0896480.1
– PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Glycine max] gi|356567382|ref|XP_003551899.1|
GO terms
3
LotjaGi1g1v0714100.1
– TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein; TAIR: AT4G02610.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain; TrEMBL-Plants: tr|I3S0A7|I3S0A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0714100
GO terms
2
LotjaGi1g1v0714100.2
– TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein; TAIR: AT4G02610.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|O22765|TRPA1_ARATH Tryptophan synthase alpha chain; TrEMBL-Plants: tr|I3S0A7|I3S0A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0714100
GO terms
2
LotjaGi2g1v0059100.1
– Tryptophan synthase beta chain; TAIR: AT5G38530.1 tryptophan synthase beta type 2; Swiss-Prot: sp|Q8Q001|TRPB2_METMA Tryptophan synthase beta chain 2; TrEMBL-Plants: tr|A0A072U669|A0A072U669_MEDTR Tryptophan synthase beta chain; Found in the gene: LotjaGi2g1v0059100
GO terms
4
LotjaGi2g1v0059100.2
– Tryptophan synthase beta chain; TAIR: AT5G38530.1 tryptophan synthase beta type 2; Swiss-Prot: sp|Q8Q001|TRPB2_METMA Tryptophan synthase beta chain 2; TrEMBL-Plants: tr|A0A072U669|A0A072U669_MEDTR Tryptophan synthase beta chain; Found in the gene: LotjaGi2g1v0059100
GO terms
4
LotjaGi2g1v0457700.1
– Tryptophan synthase, beta chain; TAIR: AT5G28237.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3T6G8|A0A0S3T6G8_PHAAN Tryptophan synthase; Found in the gene: LotjaGi2g1v0457700
GO terms
3
LotjaGi6g1v0162700.1
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I1N0T6|I1N0T6_SOYBN Tryptophan synthase; Found in the gene: LotjaGi6g1v0162700
GO terms
3
LotjaGi6g1v0162700.2
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9V8L9|A0A0L9V8L9_PHAAN Tryptophan synthase; Found in the gene: LotjaGi6g1v0162700
GO terms
2
LotjaGi6g1v0166000.2
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I3S5I7|I3S5I7_LOTJA Tryptophan synthase; Found in the gene: LotjaGi6g1v0166000
GO terms
3
LotjaGi6g1v0166000.3
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I3S5I7|I3S5I7_LOTJA Tryptophan synthase; Found in the gene: LotjaGi6g1v0166000
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006568
Biological process Tryptophan metabolic process 1 7.69