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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0163100 |
| Transcript ID | LotjaGi6g1v0163100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G56400.1 F-box family protein; Swiss-Prot: sp|Q9M1Q1|FB215_ARATH F-box protein At3g62230; TrEMBL-Plants: tr|I1JJ69|I1JJ69_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0163100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:44686617..44689771) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCTTCTCCTTCTCCTTCTCTCTCTCTCTCTCCCAAGTTATGGCCGAAAGCTTGGATATGTTTTCTGTGTTGCCCGA TGCTTTGCTTCTAGTTATAATTTCCCTTCTTCCTTTCAAGGAAGCTGCAAGAACTTCAATTCTTTCCAAACGTTGGCTAC ACATATGGGACAAAACATCAAACATTGAGTTCAATGAGTTTTTCTTTGTTAAATTTGATCAGCTCTTCTACATAAGAAGA ATCCAAAGATATGAATTTCTTAACTTCATCAGACACTGGCTTGATAACAAAAAGAACAAAGAGCACTCTACTTTGGTGGA GAAGTTCTCTTTGAAGTTATCAAAGCCTAAAGAAGTTGGTGAGATCATAAAAATGTGTGTGACCTTTGCCACACAAAATG GGGTCAAAGATTTGACCCTTGATTTTGCTCATCCTGATTTTGACTCAGTCCCCAATTTTTCTCGTCCCTTTTGGGCCCCA GAGGAACCACTTCCTACAGAAGATGACATGAAGAACAAATTTGAGTTACCAACACATGTTTATAAGCATAAGAGCCTTGA GTCTTTGAAGTTGTTTGATTGTAGTTTACGTGAAACTAATTTGATTAATTGGAATGTGCTCAAAGAAATTTCTCTTGGCT GGATGGAAGTGACACAAACTCTCATCACAACTCTGCTATCAAATTGTAAGATGATTGAGAGTTTCAGCTTGGAAAGGTGT TGGAACAAATTAGGCCTATATGAATTTTGTGGTGATAATGACTTGAGGCTGAGAAGGCTTATTGTTCGTGATTGTTCCTA TGATGGGTGGAGATTGTTCAAAATAAAAGCCCCCAATCTTGTTTTTTTCAAGTATTCTGGGGTAATGAAACTTTTTGAAA TTCAAAGCTCCTTAGCAATGGAAGAAGCAGATCTTTACTTTGGCCTTGATCTCATGCATGGTGATGTTGCTTTTAGTACA TACAATCTAATTCAAGATCTCTACCTTGTTAAGGTTCTGACGGTATGCACTTTCATACTCGAGGTATGTTTTTCACTTCT GTTTTACTTGTTTGTTTTATGTCTTCTTATCAAATTTGTTATAGAAGCTTAAGTAAATATGTCAGAAGTGCAACTGATTG ATTTTGTTAATGGTTAAAGTTAGGAAAATTGTGTGATTTGCACTTCAATCCCACCTCCACCTTGTGAGATTATGATAGAA ATATGATATATGATGTGATATGAAAAGAAGAGAGATAGAAATATAAAATCAAGTGTCCATAAATCAAAATCCCTATGTTT GGCCGATACCATTAGATGTCTAGACTCTAGCTAGAAACAAAAATAAAAATGGGAGAGAAAGAAAGAAAGTAAATAGAGAT AGTGATATAAGTGATATATGATGTGATGTGATTAGGAAAAGAAAGATAAAGAGAATATGTTGGTATTCATGGGTGTCCAC ACTGTAGTGTTGGTGAGAAGTCTCACATTTCTTAAACATATGATCAAGATAACTCTTATATATGAGAAGTTAATCCTCAA CTTTTGATATACCTTTTGGGTTGAGTTAAACCTCCAATTTTCAATATGATATTATAGCATATCTTAGATCATGTTCATTT CTTCAAATCCCACACTCCAGATGTCTAGTCCCGAGCGTGAGGAAGTGTGTTGAGAAGTTGATGTCATATGGACTAAAGAT ATGACAAGATAAATAACTCTTATATATAGGAAGTAAAATCCTCAGTTATTGAGGTACATTTTAGGTTGAGTCAGATCTTT AATAACTATGACTTACATTTCACGATTGTATAAGTAATATGATACATAGACACTAAACTACACAAATACTCCACATACAC CTGATTTTCTCTTCATTTCTTACTCCTCATCACATCACATATTATATATGACATTCATTATTACTCTCTCAAGAAGTTCC TCATTAATTGTGCCCACCCAAAATTTTCATTTTTTTAATGGGGTTTGGTTCAGAAAGCATGATTTTCCTCTTCTAAAAAT CTTCACTTGCAATTGATCATGTAAATACACTACCACTAAGCACTATAATTAAGACTTGTATAATATGCTTGCTTTAGAGT ATTGGTAGTGTTCTTTCACCCTTAATTTACCAAGAAAGAAAAATACAAGTGAATTCCACAGTATCTTTGAGTAGAGTAGA TTATTGAGTAAGTAAACATGAAACAATATATATAGAGAAGATATTTCCACCATGTGTATATGCCCCTAAAGTATAATTAA TATGGATGACTTTTTGTTAGGTAACAGGAACTAGCTATATATATATGCCACCCTGCCGTGATTAAGTGTGTATATTAGAA ATATCATTTTGTGACATATTATGATGAAAGCACTTCAAGCATATTTTACTTTAATAATTCAAAACTTCCATTAAAACTAA TTATCGGTACATGCTTAATCTTTGCATCATTGATGTCATGCTACATATATTGTTATTTATGGTTTTAAATGCTTAATTAC TTTTTATATGAAAGATTCTTCCTGCCGGACCGAACCCGCTACGTACAGAACGAGACATGAATGCAAAACACTTGATCATG AAAACAAGTTTAGGCGATCATGAACTTTTAGGAAGCGTGTTCTTGCTCAATAGCTGTCCTATGTTAGAATGCCTCACCCT TGAGATAGTCTCAAAAACAGTCTTCGATTATGTGAGTATCAATGATCTCTATCTATCTATATATATGTGTGTGTGAGCGC GCGTGCTATGTAGAAAGTTTGTTATGATACCATGTTGCATGCTTGTGTACATTACAGAATACTGGAGGGTATGCTGATAA CAGAGGAGACTGGAAGGACAATTTAATCACTCATGGATGCTTGGCCTCAACTCTGAAGATGGTGGAGGTGAATAACTTTA GGGGGAGTACGAATGAGCTTCTTGTGCTTTACTATCTTATTCGTTATGGGAGTGTCTTGGAAAAAATTATTGTCAATGTG CTAAAGGGAAAAGATGATGATTATATGGTTGATTATACGCCAAATTACAAAGACGTGGAAGAATATTTGATGACAACTCC AAGGGCTTCAAGCAATTTGCAGATATCATTCACATATTGAGTTGAGAGTGTTGTGTTATGCTTCTTTATTTCTTGTGGTT TTTTATGCTTAAGACATATGGTTTGACTATTTCGG
CDS sequence (LotjaGi6g1v0163100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGAAAGCTTGGATATGTTTTCTGTGTTGCCCGATGCTTTGCTTCTAGTTATAATTTCCCTTCTTCCTTTCAAGGA AGCTGCAAGAACTTCAATTCTTTCCAAACGTTGGCTACACATATGGGACAAAACATCAAACATTGAGTTCAATGAGTTTT TCTTTGTTAAATTTGATCAGCTCTTCTACATAAGAAGAATCCAAAGATATGAATTTCTTAACTTCATCAGACACTGGCTT GATAACAAAAAGAACAAAGAGCACTCTACTTTGGTGGAGAAGTTCTCTTTGAAGTTATCAAAGCCTAAAGAAGTTGGTGA GATCATAAAAATGTGTGTGACCTTTGCCACACAAAATGGGGTCAAAGATTTGACCCTTGATTTTGCTCATCCTGATTTTG ACTCAGTCCCCAATTTTTCTCGTCCCTTTTGGGCCCCAGAGGAACCACTTCCTACAGAAGATGACATGAAGAACAAATTT GAGTTACCAACACATGTTTATAAGCATAAGAGCCTTGAGTCTTTGAAGTTGTTTGATTGTAGTTTACGTGAAACTAATTT GATTAATTGGAATGTGCTCAAAGAAATTTCTCTTGGCTGGATGGAAGTGACACAAACTCTCATCACAACTCTGCTATCAA ATTGTAAGATGATTGAGAGTTTCAGCTTGGAAAGGTGTTGGAACAAATTAGGCCTATATGAATTTTGTGGTGATAATGAC TTGAGGCTGAGAAGGCTTATTGTTCGTGATTGTTCCTATGATGGGTGGAGATTGTTCAAAATAAAAGCCCCCAATCTTGT TTTTTTCAAGTATTCTGGGGTAATGAAACTTTTTGAAATTCAAAGCTCCTTAGCAATGGAAGAAGCAGATCTTTACTTTG GCCTTGATCTCATGCATGGTGATGTTGCTTTTAGTACATACAATCTAATTCAAGATCTCTACCTTGTTAAGGTTCTGACG GTATGCACTTTCATACTCGAGATTCTTCCTGCCGGACCGAACCCGCTACGTACAGAACGAGACATGAATGCAAAACACTT GATCATGAAAACAAGTTTAGGCGATCATGAACTTTTAGGAAGCGTGTTCTTGCTCAATAGCTGTCCTATGTTAGAATGCC TCACCCTTGAGATAGTCTCAAAAACAGTCTTCGATTATAATACTGGAGGGTATGCTGATAACAGAGGAGACTGGAAGGAC AATTTAATCACTCATGGATGCTTGGCCTCAACTCTGAAGATGGTGGAGGTGAATAACTTTAGGGGGAGTACGAATGAGCT TCTTGTGCTTTACTATCTTATTCGTTATGGGAGTGTCTTGGAAAAAATTATTGTCAATGTGCTAAAGGGAAAAGATGATG ATTATATGGTTGATTATACGCCAAATTACAAAGACGTGGAAGAATATTTGATGACAACTCCAAGGGCTTCAAGCAATTTG CAGATATCATTCACATATTGA
Protein sequence (LotjaGi6g1v0163100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESLDMFSVLPDALLLVIISLLPFKEAARTSILSKRWLHIWDKTSNIEFNEFFFVKFDQLFYIRRIQRYEFLNFIRHWL DNKKNKEHSTLVEKFSLKLSKPKEVGEIIKMCVTFATQNGVKDLTLDFAHPDFDSVPNFSRPFWAPEEPLPTEDDMKNKF ELPTHVYKHKSLESLKLFDCSLRETNLINWNVLKEISLGWMEVTQTLITTLLSNCKMIESFSLERCWNKLGLYEFCGDND LRLRRLIVRDCSYDGWRLFKIKAPNLVFFKYSGVMKLFEIQSSLAMEEADLYFGLDLMHGDVAFSTYNLIQDLYLVKVLT VCTFILEILPAGPNPLRTERDMNAKHLIMKTSLGDHELLGSVFLLNSCPMLECLTLEIVSKTVFDYNTGGYADNRGDWKD NLITHGCLASTLKMVEVNNFRGSTNELLVLYYLIRYGSVLEKIIVNVLKGKDDDYMVDYTPNYKDVEEYLMTTPRASSNL QISFTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 4 | 475 | 472 | 6.4E-112 | – | |
| PANTHER | 4 | 475 | 472 | 6.4E-112 | – | |
| SUPERFAMILY | 5 | 57 | 53 | 3.01E-9 | ||
| Gene3D | 7 | 286 | 280 | 1.1E-15 | ||
| Pfam | 8 | 44 | 37 | 2.1E-5 | ||
| Phobius | 14 | 23 | 10 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 486 | 458 | - | – | |
| SMART | 406 | 485 | 80 | 1.6E-5 | ||
| Pfam | 407 | 444 | 38 | 4.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0163100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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