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LotjaGi6g1v0169000.1

Overview

Field Value
Gene ID LotjaGi6g1v0169000
Transcript ID LotjaGi6g1v0169000.1
Lotus japonicus genome version Gifu v1.2
Description Ribose-phosphate pyrophosphokinase; TAIR: AT2G42910.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q680A5|KPRS4_ARATH Ribose-phosphate pyrophosphokinase 4; TrEMBL-Plants: tr|G7K0V0|G7K0V0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi6g1v0169000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:45435693..45439777) extracted from Lotus japonicus Gifu genome v1.2.

TTCCCATCTTGAACAAGTTCCTCTTGCGCCTCATCCATGTCTCTACAATTTCAGCACCCATTAGATTTATGCACTGCACA GGTCTGAAGCTTTTAAATTGGCTGTCGGCGAATGGTGTTCACCGGTGACCTGAAGGAGAGGGGAATGGTGTTCGCCGGTG GCAGAATCGATCTGGTGGGTTTAGAAAGGATATTATTGTCTCAAGAGTAAATAAATTAAGGGTATCCCTGTCATCACAGT GTAAAATTTGAAGTCCAAAACCACACCCTAAAACCCTGTTTCATTTTGTTGTTCCTTCTACATTCTCTTGTGCTTAGTCT CCACGCTTTTGCTTAGACAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGGCATCATCAGCAGTGGTG AAGTCTCCCAAGAAGTCAGTCAACCTCTTCTACTCCCTTGATTCCCAAGACCTTGCCCGCAAGGTTGCTGCTCATTCCAC CGATATCACTCTCCAGAATATCAGATGGAGGTTCCTCTCTCTCTCATTCTCATGTTTTGTTTGTTACTGTAGTTCATGTT TTGCTTGATTGTGTTGTATTGGGTCTTATCTAATGTTTTACATGAGTCAAATTCTGCAATGAAAAGTTTTATTTTTTATG GGGTGTTAAATATTAAGCTGAATTCAAACAGGTTTTTATTAGAATTTGGAGTCCATAAACTAAATGGGTATTTCAAACAA GGGACAGAGGTTTAATTTCACTAACTGGTTAAGCTTAGACATTTAGTGAATGAGGAGTACTACCCTAGATTGTTAGGATT TGCCTCAAAGAAAACATATTGTCTTTTTATGTAGCTGAGTACTTATGTTAAGATGCTTTTTCATGACTTGTTTTGAAATC TTATTTTGTGATGTAGATTTACCCATTACTTTAGTTCTGTAATGGCTTATATTGTTTTCTTCATATCCTCAGATATCTGG AGGTTTTGGCTCCTCATACTACGTTTCACTTGTACAACATTATTATGAAAAAAAAGAGCTGCATGATGAATATAGTTTTC GTTTGTTGTTTGGCAAAATAGAAAAACTGATTAATTTTATGCTTGTCCAGGTCTTTTGCTGATGGGTTCCCGAACCTATT TATAAATAATGCAGAAGAGCTTCGTGGTGAACATGTTGCCTTTTTGGCATCATTCAGCTCCCCAGCCCAAGTCTTTGAAC AACTTTCTGTCATTTATGCACTCCCTCGCCTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTTTTCCCAACTGGATCA TTTGAGCGAATGGAAGAAGAAGGAGATGTAGCAACTGCCTTCACCCTTGCAAGGATGTTGTCTAATATTCCTGTTTCAAG AGGCGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGTTTGTGTATTTTATGCACTGAAAGGAAGTACTA TGCTTGCCTATGTGGTGTGTAATTTAAGATCCATATGGATTACTGTTAAATGTTATTTTTATTTTAATGGAAATTTTGTT GATGGTCCCTTTGCTTTGCCTGATTATGATGGGTCCATGTTTACATTGCACTTATGTTTTGTTGTCCTATATTGTACTAT TAAGAAGCTTTTCTTCATTGAAGTAGATGATGTACTCTCAAAAGAAGGCCTAAAGGTACTGTCCATTAGAATACACAGCT CAGATTGGTGTCAAGAGTAAAAAGTATAGATGATGTTTTTGCTTGATTGATGTTCACATCATATGACACCATGGATGTTT TAGCGTAATTTCAAATCTATGTTTTGATCCCTTGATGTTCAGCATACTTGTTTAACTTTTACATGTTTGAACAACATATT CAACTCTTATTCTCATTTAGTTTAACATCGAGAGCATGCTTAGTCTATGTAAGGTGTAACAACATAACAAAACATTTAGG TAATCAAGGCTTCTTCATAGAAGTGTTTTGAGGTTTTGGGACATTGCATCGTCATTCCCCAACTCTCTTTGCTGTTTTCA TATGTACTCGATGTTTGAATGGTGAGCTAACTTTTATCAGTTATGATTTACAATTATCCAGGAGAGGTTTTATTTTGGAG ATGAGGTTTTGCCATTGTTTGAGACTGGTATTCCTCTGTTAAAGCAACGCTTGCAGCTGCTTCCTGATGCTGATAATGTG AGTGTTCTGCATTATTTCAGTCACATTTCCTTTGTCTGTAGGTCAAACCTGTAATGCCAAAACAATGCATATTTATATTT CCTGGCAAATTCCCATGCTTGCTATTCTCATTTTCTTTTTTAGTCTGAATAACTGATTGTTATTTTCAGGTAGTTATTGC ATTCCCCGATGATGGTGCATGGAAGCGATTCCACAAGCAGTTTGATAAATATTCAGTGGTAGGTCTCCCTTAAGTATATC TTTATTTAATTTGTACTATAGTTGTGTATAGGTTGTCTAAATTTTTGAAATGGCAGGTTGTATGTACAAAGGTTCGTGAA GGTGACAAGAGGATAGTTCGGCTCAAGGAAGGCGACGTCGCTGGACATCATGTAGTCATTGTTGATGATTTGGTCCAATC TGGAAGCACCCTGATTGAGTGTCAGGTTAATTATTCAATTTCTGAATCAAAATGAGATGCTTATTTTGTCAAAAGAAAAA ATTATATATTTGAAGATCATTGGTGTATTGGGTTTGCAAATTTAAAATTAGCAACACTTAATCTCTGTATGCATGTGTCT GCATATACTCAGTCCATGAATCTGCATCTACATTTAACTTAACATTTCTCTCTTTTGCTGTTGGTTTCCGCAGAAAGTGT TAGCAGCCAATGGCGCAGCAAAGGTGAGTGCCTATGTCACTCACGGCGTGTTCCCTAACCAATCATGGGAGCGATTTACT CATAAAAATGGTTAGTCCTGACCTAATGTCACATACATCTACATCCCTATATTCTCATATATTTGAATATTATTCCAATT TGATTTAATTTGCAGGAGCTGTGGAGAATGCATTTGCCTACTTCTGGATCACAGATTCTTGCCCACTTACTGTCAAAGCT TTAGCAAACAAAGCTCCTTTTGAAGTTTTGAGTCTAGCCGGGTCAATTGCTAATGCCCTGCAAATCTGAAGACAAAAACT GATCTAGGGAAAAAAAAAACATTTAACATTGTGATAGGGGAGATTCTTATCTACAATTTTTTTGCAGTTTAAGATTACAA TTGCATCCTTTTCACTTTGCTTGCATTGCCATGAGCTTAGCAAAGTGAAACCTGTGAAATTAATATCTTCTGTTTTGGAC GTTTGAGATTCCCCTGAACTGAGTGTCAACTATGGTACAAGACTTTTGAATGCAAATCATCCATTCTTGCCTGAGATTGC TCATCATCAGGCATGAGAATTTGAAGTCATTGTTGGAATCCATGTTTACAATTTTGTCTTGACTAGAAAAACTTACATGC TAATCTTTAATAGAAAGGATGCAGGTTCATTATATAATACTCACGCTTGTTGAATCATTTGTCAATTATTACTTGTCTAC TGCCAAATGACATTTCAATTGTGAGGTGACTTTTTAGATACTGTAATACTGTTCCTCAATATTCCTTATAGAAAATGAAG CTATTTGCAACTATTACTCTCTTGATAATTCTGAAACTTCAAAAGCAGGGGGCTTTCCTTTTGCTCTGCCAGCCACCAAA ACATTTGGTGGCCAAGACTTAAAGTTGTCATTTTAGCTTTTTGAACGTTTTTACCTCGTGCTAAACTTTTTAATTTCTTT TTATATCTCAATTTATATTCACTTTGCATTCATTGTATTTTTCAACTGTACCACCTAGCGCGTAGATCAACTGATATGAG GTTGTTTTTGCTTAAGCAGATGTCTTAAGTTTGAGTCTTTGTGAATGGAGTAGCATTAAATACTTGAATGAGAGATTTCT GCCCATGGAGGTCCTACTCGGCTTAAGCAAGATTGTCTTAGTGGAGATTTCTCCATGTGATTTATAAAAATAAAAATAAA CATTTTCAATTGTACTGTATGTTACATTATCATAAATTGATGACATTAGTCGGTATTATTAACCAATATATTAATTGAAA CCTAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCATCAGCAGTGGTGAAGTCTCCCAAGAAGTCAGTCAACCTCTTCTACTCCCTTGATTCCCAAGACCTTGCCCG CAAGGTTGCTGCTCATTCCACCGATATCACTCTCCAGAATATCAGATGGAGGTCTTTTGCTGATGGGTTCCCGAACCTAT TTATAAATAATGCAGAAGAGCTTCGTGGTGAACATGTTGCCTTTTTGGCATCATTCAGCTCCCCAGCCCAAGTCTTTGAA CAACTTTCTGTCATTTATGCACTCCCTCGCCTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTTTTCCCAACTGGATC ATTTGAGCGAATGGAAGAAGAAGGAGATGTAGCAACTGCCTTCACCCTTGCAAGGATGTTGTCTAATATTCCTGTTTCAA GAGGCGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAGGTTTTGCCA TTGTTTGAGACTGGTATTCCTCTGTTAAAGCAACGCTTGCAGCTGCTTCCTGATGCTGATAATGTAGTTATTGCATTCCC CGATGATGGTGCATGGAAGCGATTCCACAAGCAGTTTGATAAATATTCAGTGGTTGTATGTACAAAGGTTCGTGAAGGTG ACAAGAGGATAGTTCGGCTCAAGGAAGGCGACGTCGCTGGACATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGA AGCACCCTGATTGAGTGTCAGAAAGTGTTAGCAGCCAATGGCGCAGCAAAGGTGAGTGCCTATGTCACTCACGGCGTGTT CCCTAACCAATCATGGGAGCGATTTACTCATAAAAATGGAGCTGTGGAGAATGCATTTGCCTACTTCTGGATCACAGATT CTTGCCCACTTACTGTCAAAGCTTTAGCAAACAAAGCTCCTTTTGAAGTTTTGAGTCTAGCCGGGTCAATTGCTAATGCC CTGCAAATCTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSAVVKSPKKSVNLFYSLDSQDLARKVAAHSTDITLQNIRWRSFADGFPNLFINNAEELRGEHVAFLASFSSPAQVFE QLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPVSRGGPTSLVIYDIHALQERFYFGDEVLP LFETGIPLLKQRLQLLPDADNVVIAFPDDGAWKRFHKQFDKYSVVVCTKVREGDKRIVRLKEGDVAGHHVVIVDDLVQSG STLIECQKVLAANGAAKVSAYVTHGVFPNQSWERFTHKNGAVENAFAYFWITDSCPLTVKALANKAPFEVLSLAGSIANA LQI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10210:SF34
8 323 316 4.4E-182 –
PANTHER
PTHR10210
8 323 316 4.4E-182
IPR005946
SMART
SM01400
14 131 118 2.7E-15 –
TIGRFAM
TIGR01251
16 321 306 1.3E-35
IPR005946
SUPERFAMILY
SSF53271
16 159 144 4.25E-14
IPR029057
Pfam
PF13793
17 129 113 7.1E-9
IPR029099
Gene3D
G3DSA:3.40.50.2020
22 321 300 4.6E-56
IPR029057
Gene3D
G3DSA:3.40.50.2020
163 311 149 4.6E-56
IPR029057
CDD
cd06223
180 268 89 3.68928E-11
IPR000836
SUPERFAMILY
SSF53271
181 322 142 1.1E-22
IPR029057
Pfam
PF00156
220 270 51 4.0E-9
IPR000836

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0004749
Molecular function Ribose phosphate diphosphokinase activity Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+).
Subterm of
GO:0009116
Biological process Nucleoside metabolic process The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
Subterm of
GO:0009165
Biological process Nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0169000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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