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LotjaGi6g1v0176200.2

Overview

Field Value
Gene ID LotjaGi6g1v0176200
Transcript ID LotjaGi6g1v0176200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glutathione S-transferase; TAIR: AT2G30860.1 glutathione S-transferase PHI 9; Swiss-Prot: sp|O80852|GSTF9_ARATH Glutathione S-transferase F9; TrEMBL-Plants: tr|I3T6E5|I3T6E5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0176200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:46669418..46671021) extracted from Lotus japonicus Gifu genome v1.2.

AAATGCAGCAGCATGCTTTTCCCTGATAACTAGGCTGAGAGAGCACACCCAAACCAGACCACATTGAGTCTGTGAATTTT GATAGCAACAATGGCGGTGAAGGTTTACGGCGCGTACTACCCTTCAGCTCAGAGGGTGCTGGTGTGTCTCGTTGAGAAGG AAATTCAGTTTGAGACACTCCCTCTTGATGCCTTGAAGCAAGAGCATCAGGATCCTCACTACCTCAAACTCCAGGTTCAA TTTTTCACATTACCCAGTTCAATTTGTGTTGAATTTCTTACAATTTGTGAAACCCTAACATACTATTAGTTTGCTGGATC ATTGGATTGTCATAAATTTGCTTTGTTTTGCAGCCATTTGGAAAGATGCCTGTAATTCAAGATGGTGATTATACCCTCTA TGGTTAGTCAATAGCCCCTTTTTTTCTTGTGCCAATTTGATTAAGGATTGATGATTTTGGTTTTTAATCAACATGTTAGA TTGGGTGTATGTTTAGATTTTCATTGAACTCAACATTCCGCGATCAAATTTCAATGTTAAAATCTTGTTTTTCCATCAAT GGAATGCTAGCCGAAAAATCAAACGGGCACTGAATGTGTGTTTGTATTTACGTTCAAATTTGCTAAAAGCACATTCGCTG CAATGATACACTAGACATGGAATGGTCGATAAAGCACATTCAAACTGCCTTGGAATGATCCCTGATCCCAATTCATGTGT TACTCTGACTAATACTAGATTGATTAATTTGTCTCAAATGTGTTTTTAATCCCAAATTTCATTTCTTTATCTATCTGCTA ATGAAGAATAACCTATTTATTTGAGTACACTGAATGGAAACAATTTTTGTGCAGAATCTCGTGCAATTATCAGATACTTG GCAGAAAAGTATAAGAACCAAGGGACAGAGTTGTTGGGGAGGACAATAGAAGAAAGGGGTCTGGTGGAGCAATGGCTTGA AGTGGAAGCACATCAGTTCCACCCACCAGTCTTGTACAACTATATCCATGATTATTATGGTGCTGCTCACCATCTGCGTC TTAATGACGACTCAGAAGTGGTTAAAGTGAATAATGAGAAGATTGCGAAGGTGCTGGATATATACGAGGAGAGGCTGTCA AGGAGCAAGTACTTGGCTGGTGATTTCTTCAGCCTTGCTGATCTGAGTCATCTCCCATTGGGTGCATTCTTGTGGTATCC AAATCCGCGGGACGAAGAACTGGTAGAGAAGAGAGAGCATGTGAGGGCTTGGTGGGAGGATATTAGCTCTAGGCCAGCTT GGAAAAAGGTGCAACAAGCATATCAATACCCTGTGTTTGGGGATCCAAATTTTTGGTAGACACTCAACACCCAAAGGAAA AAAAAGGAAGAGAAGAGAGGAAAATGATAGATGTACATGTGATCTAATTGGAACAGAGGGACTGAGAGAACAATTAACTG TATCTGGAGTATTGTTCTTGTTGGGTGTTTAAAATTCTGAGATTTTTTTGGATGACTGTACCTACATTCCAACCATCTCA AGGTATGGATTGATGAAAATGAAATACCTTTCCTGTCACATGCTTGTCAATAAAATTTAGGCTCATGCATAGATTCAAAT CCAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0176200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGTGAAGGTTTACGGCGCGTACTACCCTTCAGCTCAGAGGGTGCTGGTGTGTCTCGTTGAGAAGGAAATTCAGTT TGAGACACTCCCTCTTGATGCCTTGAAGCAAGAGCATCAGGATCCTCACTACCTCAAACTCCAGCCATTTGGAAAGATGC CTGTAATTCAAGATGGTGATTATACCCTCTATGAATCTCGTGCAATTATCAGATACTTGGCAGAAAAGTATAAGAACCAA GGGACAGAGTTGTTGGGGAGGACAATAGAAGAAAGGGGTCTGGTGGAGCAATGGCTTGAAGTGGAAGCACATCAGTTCCA CCCACCAGTCTTGTACAACTATATCCATGATTATTATGGTGCTGCTCACCATCTGCGTCTTAATGACGACTCAGAAGTGG TTAAAGTGAATAATGAGAAGATTGCGAAGGTGCTGGATATATACGAGGAGAGGCTGTCAAGGAGCAAGTACTTGGCTGGT GATTTCTTCAGCCTTGCTGATCTGAGTCATCTCCCATTGGGTGCATTCTTGTGGTATCCAAATCCGCGGGACGAAGAACT GGTAGAGAAGAGAGAGCATGTGAGGGCTTGGTGGGAGGATATTAGCTCTAGGCCAGCTTGGAAAAAGGTGCAACAAGCAT ATCAATACCCTGTGTTTGGGGATCCAAATTTTTGGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0176200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVKVYGAYYPSAQRVLVCLVEKEIQFETLPLDALKQEHQDPHYLKLQPFGKMPVIQDGDYTLYESRAIIRYLAEKYKNQ GTELLGRTIEERGLVEQWLEVEAHQFHPPVLYNYIHDYYGAAHHLRLNDDSEVVKVNNEKIAKVLDIYEERLSRSKYLAG DFFSLADLSHLPLGAFLWYPNPRDEELVEKREHVRAWWEDISSRPAWKKVQQAYQYPVFGDPNFW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.30.10
1 85 85 8.2E-29
IPR036249
ProSiteProfiles
PS50404
1 81 81 20.223
IPR004045
Pfam
PF02798
1 75 75 1.1E-16
IPR004045
PANTHER
PTHR43900:SF51
2 218 217 2.0E-95 –
PANTHER
PTHR43900
2 218 217 2.0E-95 –
CDD
cd03053
2 76 75 4.38395E-33 –
SUPERFAMILY
SSF52833
3 81 79 1.35E-21
IPR036249
SFLD
SFLDS00019
4 204 201 1.261E-44
IPR040079
SFLD
SFLDG00358
4 204 201 1.261E-44 –
SUPERFAMILY
SSF47616
72 215 144 2.65E-30
IPR036282
Gene3D
G3DSA:1.20.1050.10
86 211 126 3.1E-41 –
ProSiteProfiles
PS50405
88 224 137 24.075
IPR010987
CDD
cd03187
90 210 121 8.08278E-49
IPR034347
Pfam
PF00043
123 205 83 8.1E-15
IPR004046

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0176200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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