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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0177900 |
| Transcript ID | LotjaGi6g1v0177900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT2G32560.1 F-box family protein; Swiss-Prot: sp|Q8RY82|FB121_ARATH F-box protein At2g32560; TrEMBL-Plants: tr|A0A151QW00|A0A151QW00_CAJCA F-box protein family; Found in the gene: LotjaGi6g1v0177900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46991026..46996786) extracted from Lotus japonicus Gifu genome v1.2.
TGATTGTTGGCCCTTCCTTCCAACCTACAACAAGATGCAACTGCTCTTGGGATGCTCTCCCCTTCGTTACATTTTGGGAT CTTATTCTGTATTATTTTAGTCTCTACATTTAAATATTGAAGATAAATATTGTAACATGATGGAAGAACTGAAATATTCA ATATTTAGATTTTGGACAATTCATTCCAAATATATACACACAAATCTTATTTTAACCTTAGCCGCCCATTGTTTTTTTGT TACATAAATTACTACTATTTCCTCTCTTCCTTTTCATACATTGTCCATTAACTGTTTGTGAAATTGCCCCAACGACAACA AAGTGGTGCAATTTAATCTGGGAATTCATTGAAACTTTGATTAGAGAGCATAGTTGAGGTGTGGTGAAGAATTTGTTGGA GGTGGTGGTGAGAGAGGACCTACCACACCACCCACCACCCTTCAACATTCATCACCATTCCCTTTTATATAATCTACCTC TCTGTAGGTGCATCTTCCCAAGGATTGTTGTCCCTTTGGGCTTGTTTCCATTGCTTTACCTGATCCTAAGGGTGGTGGAC CTATCACTGCTTCAACTGCAACTACCATAGATCTTTTCTGTTCACAAATTATCCCCTTAACCAAATTCATTATTCATTTA CACAAGAGAAAAAGAGATTCTTGTGATATGGGTCTTTGCATCTAGACTTATCTTAATCAATTTTTTTCCCTTCTTGTATT GCCAATTCTATTTTCCAGGTGTCAGAAAACCTGGTATCAGATTTTGGTGCCCCCACCATCTTTTGGTCCCTAGGTTCAAC ACCATCATAGGACCCATTGCTGCATATTGAATCTATCATTGAATGACAGCTGGTTACCTTGTCTGTACGGTTGAGCTCCT TTTTGTTATGGGAAGCCAATAAGAAGAAGAAAACTGTTTCTAAAGTTAAATCTTTTTTCCTTTGTTGCATATAAAACATA ACAGTGGTTCAAGCCTTCAAGTCAAGGCTAGTTTCACCCCAGTTCGTCGGTGTGCTTGCTTGTCAACCATATTTATTCTG ATCAAAATTTGGTTTGAGGAGGCCCACCATTGGGTTTTTGGTGAGCTTTCTTTGAACCAATTAAAACCCCATCCTTGAAA GGTGTCTGAATATTCCAAATTTGCTTCCATTTGGGATTATATAGTGAGGAGTTTTTCATTTTTTTAAGCCATTGCCTTTC CACAATTGGCTTCTCCACTGAATAGTCTTTGCTCTCTTATCCAAATTGCCAAATTCATATTTGACACGTAAAAGATTTCC ACATATTCTAATGTTACTTTACTTCATTACTTGCTTCTCCTTCTTCCTGTTTTTAAAGTCTCTTCTTCTCAAACCACTCC CATCATGGGCAACTGAGATGAGGTTGCTTTCCCTTTTGTTTTGTCAAGAGTTGTCAGTCTCCAAGTTGTTTTGGAATCTC CCTTGGCTTGGTTTTCATTGTCAAATTCCTTCAAGAATGTCTCTTATGAAGAAGAGTCTGAGCTCAAGAGTAGAGAATGA TGATCAAGAAGACAGCCAGGACTTGTCAGTGTTGGACTTGCCTGACCTGGCCTTGGAGTGCATTCTTGAGAGGCTACCTC CCTCTGCACTGTGTCAAATGGCTGGCGTTTGCCGTTCCTTGAGGGAGAGTTGTGTGAGTGATCACCTGTGGGAGAGGCAC ATGAAGCAGAAATGGGGTAAAGTTATTGGTCCAGCTGCATACAGGGAGTGGAAATGGCATGTTGCTTCAACAAGGAATGT TGGGGGTCTTAAACATGGGAAGCAGAGAGGCTTGATGAGATTTCTTTCTCTTCGTTGGCCTTTTCCATGGATGAAATTAA AGGGTGATCCAAATGTCAGAAGCAAGCAGGGGAGTTTTTCACCTGTTGATTCTGTCATGAGCTGGTATCTTGCTCTTGAG ACAGGCAATTTCTGGTTTCCTGGTCAGGTCTATAACCGTGAGGTATCTATGAACCCTTTTGTGCTTTTTTATCGAAAATT TATTTATATCTACATTACTGCCCTCAAAGATAAAACCAGTTGCTTGAATTTCAATGGAATTCAGTGGATTGTGATTTCCC ACAAGTTACATTTTTGCTGTTGGTGGTGTAGAATGGTCATGTTGGATTCATGTTATCTTGCTATGATGCTGAGGTGAGCT ATGATTCACGAACCGATACCTTCCAAGCCAGGTAATTGGACATGATTCTAGGTGATCGTATATGTTCTTGTTTGTTTATC CATTAGATGTGATGTGAATATGCTTTTTCTCAATCCAACAACTTTGTTCAGTTAGAATAACTGTCTTTAAAAGCCAAATA TGTCAGTTCAACACACATACTTAGTTGTGTGGTGTTAATACATGGAGAGTCTTTCTGTATACATGTTCACATTGGTTAGA GATTTGGTTAACAATTTGAAGAGTTTTTAGGGAAAATATAGGAAGAAAATAAAATAAAACTTAGATCAGATGGCCTAATT ATTGCCTATTACAGATATCCTCCGCATGGAAGAAGGACAGATGCTAGAGAGTGTGGCATCCCATGGGAAAGGATAAGAGC ACCTCCTGTTGATACCTCGCCTCATGATCTTCATATCTCTGGCTGTTTACATGATTTGCATCCGGGTGATCACATAGAGA TTCAGTGGAGGAGAAATAAAGAATTTCCTTATGGTTTGTTCCTTTCTCCATTCTTTCGTCCTGCTAATTACTTTGGCTAG TAAGGGTGTCCACAAAAGAGCCACTGAATTTTAACAAACTTAAAAATGAATGGCTACATACACATACTGCAGGACCATAT CTATATCTCTACAGAGAGCCAACAAAAGGGGCAATTGTATCTACTTTTAGTCTTCCATTGCAAAATGATTAACCTTCAAA TCTTAATTATCCATTTCCATTATTCTGATACTTGAAAATATATTTTTGTATAATCTTCATGTTCTTGTACACTTAATCTC TTATAACTTGATTAAGAAAATGACCACTAGAACTGTATTAACCTAAAATGAATTGCTGCATGACGAGATGCAACTTTATG GCAGGTTGGTGGTATGGTGTTGTGGGCCACTTGGAGTCCTGCAATGGAGATGAAAATTATTGCCGCTGTCATAGTAATGG TGAGTTAATTCAAATTTTATATAGGATGATTGTTATTACTATCTATCATTACTTTTTTGGTTCTGGATTTTATCAAACAT TTAATCCAGTTATGTCGCTGTGTGTGGTTAGTGGATCAATGAAAGGATTCGACTTGGTGATTTGTTGAAGAAGTGGTTGT GGGATCAAAATAAAATATGCTTTTTAAACACAACTTAATATAATGCCTAGAAATTTTTATGACAAAGTTGAGTGAAGCAT GAAGTTTCCTGTTTTATAACCAACCAATAATATTTTTATTTGTATTGTGGGAGTTATAAAGTGAAAATATTGACATGCAT GTACAGTTCACTTTGACAACCAGACCAGATCACAGAGTTTGGCTCTCTTCCTGGATTCTATTATATATCTCTACTTGGAC CACCTGCTATGCTATTTTATTGGTCCCCAAGACATTTCATTGTCACTATGTCATCATTTCCACCAACATATTGATAAGTT GTGTCTCAGTGGATACATTTATGGCCAACTATGCTAAAGAAATCAGTTTCTTTTATAGACTGAGTTTCAATTCTAGTAGG AATCTTTTTTGTTATGTGGAGGAATAACATGGCTATTTTGAGCTTCCAAACAATTTTCATTTTTCTGATCTTTTTAATTA TAGCCAGAATGACCCACAACATCCTTCTATGGTACCTAGAAATGAACATTTTATTTCTCATTCCCTTCACTGCAATAACA ATGGAGACAGAAGTAGGATTAATAGTCAAAAATAGTTCTGAAGCTATTGCCACTTGACCTAACAGGGAAGACTCACTAAT GTTTAAGTCTTGCCTCAGTAAAAAAAATGATATAGAATATTCTGTTCCTTGTCTTGTGTTGAGAAGGCCAATTTTCATCT TTGAACTTCTTTGTGGAATGAATTTTAACAAACATGTGCTCTTAGATAAAATTTTGTTCTTTATGTCTTTCACATGTCGT CAACATATCATTCATAGATTAAAACTGTAAAATTACAAAGGATTTCAACATTAAAACTCGTAGCACTAATAAAATGATGG TGAAGGACTGCGATTAATGATGCCCTGATGATAAAAATCACATGTAATTGTTTTCTGACTTAATTGTGGCATAATCGTAC CGTAATCACACCAGAAAGTGTTTCCCCCCCCTTACATTTATGCTATTTTATATGCATATAGACGAAATGTGCTAAATCTT ATAATTATGCGATTCACGGCTAATACCCCCTTCTCAAGTCATGATCCAGATTTTGACTACTATGGTCATGGCATTAGCCT GGTTATGTTTATATCCAATCAGTGAAAGGAGCTTCTTGAGATTCTAACATAGTTTATTTGATGCTAAACGTGTGGTTGCA GACACAGTGGTGCTAGAATTCAATCACTACACTCCTGGCTCGCGATGGAGACAAACCACTGTCAGTAGGAAAGACCATAG AGAGGAGGGAAATGAGGCTGATGGCTTTTATGGGGGAATAAGAAAGATTAAGAGTGAATCTGAGATTTCCATTTGGAAAC GCCTTTGGCCATCTGAAGTCTTGGATTAGTAGGCACTGGATCTGGTCAAATTCTCCACTTAGCATGATATCAAATAGCTG ATTCGCTTCCGTATCAAGTTCTCCAACGATGTAAATTACTCATTGTTTATGCACAAATGATGTAGGATATTTATTCCACT ACATATAAAATCTAGCTATGTTAAATTAGTAGTTTTTGCTCTCGTAGCTATATACATTTCTATCCTAATGAATGAAGATG CTCACTCTCTTAGGCTATGAATTTTCTTTTTGCTTAGGTTTATGGTTTAGATGTATATTGTCAGCTTTAGTATCAGCCAT TTTCTGTGTCATTTAATGTTAGCCATATATGCTTTGTGGGCTATTGTTTTAGAAAAGGTTATAAGCAGAGATAACAATGG CCTACTAAGTTGAGAAGCTTTACTGTAAGAATGCCTAAAAATCTGAAATCGCCCATCTGGGTATGTTCAGATTCAATATA CCATTAATTGGTTTGTTTTCTCATTCATTTGAATCTACATCAAAGAATTATCCTTAGGTCCAGGAAAGAAGATTGTTGGG GAAATTGATTTTATAATGCAGATTTCAAAAGAAAGGTACATGCTCTATGTCAGAATCCAATTACAAGGTATAAAACTTCA ATCCCACATTCAAAATGCATGATTTCAAAAGAAAGGTACATGCTCTATCTTTTTGAATAACAGCTCTAAAGGGGATGGTG ATCATTACATGTATGATACTGAGTCATCTGAAAAAGAAATGTCCATCTAGTTTGACAGAAAAACCTTGGGCTGGCAAAGG CAATGAAATTGATGAAAGGACCAAGGAATGACAAAGTTTTATGGAATACAATGACAAGAAAGCGTGGTAAAGAGCTGGAG TGTTGAGTTTTTTGGGTGCTGAATTGAAGGGAATATGGATTGTATTATATATGAGGAGCTATGGTGTCATCCTCCAAAGC AATCTTCAAAGCCCAACCAAAATTAAGCATCACTCTTCATTCTTTTTTTTTTTTTTTGAATAGCTCTTCATTCTTCAAAG TACTAAGATTTTGTCTATACTTGGCAAGTTAATTAATGATGTTTTTTTGTCTCTATTTGATTTCCTTATAACGAATTTGC C
CDS sequence (LotjaGi6g1v0177900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACTTTACTTCATTACTTGCTTCTCCTTCTTCCTGTTTTTAAAGTCTCTTCTTCTCAAACCACTCCCATCATGGGC AACTGAGATGAGGTTGCTTTCCCTTTTGTTTTGTCAAGAGTTGTCAGTCTCCAAGTTGTTTTGGAATCTCCCTTGGCTTG GTTTTCATTGTCAAATTCCTTCAAGAATGTCTCTTATGAAGAAGAGTCTGAGCTCAAGAGTAGAGAATGATGATCAAGAA GACAGCCAGGACTTGTCAGTGTTGGACTTGCCTGACCTGGCCTTGGAGTGCATTCTTGAGAGGCTACCTCCCTCTGCACT GTGTCAAATGGCTGGCGTTTGCCGTTCCTTGAGGGAGAGTTGTGTGAGTGATCACCTGTGGGAGAGGCACATGAAGCAGA AATGGGGTAAAGTTATTGGTCCAGCTGCATACAGGGAGTGGAAATGGCATGTTGCTTCAACAAGGAATGTTGGGGGTCTT AAACATGGGAAGCAGAGAGGCTTGATGAGATTTCTTTCTCTTCGTTGGCCTTTTCCATGGATGAAATTAAAGGGTGATCC AAATGTCAGAAGCAAGCAGGGGAGTTTTTCACCTGTTGATTCTGTCATGAGCTGGTATCTTGCTCTTGAGACAGGCAATT TCTGGTTTCCTGGTCAGGTCTATAACCGTGAGAATGGTCATGTTGGATTCATGTTATCTTGCTATGATGCTGAGGTGAGC TATGATTCACGAACCGATACCTTCCAAGCCAGATATCCTCCGCATGGAAGAAGGACAGATGCTAGAGAGTGTGGCATCCC ATGGGAAAGGATAAGAGCACCTCCTGTTGATACCTCGCCTCATGATCTTCATATCTCTGGCTGTTTACATGATTTGCATC CGGGTGATCACATAGAGATTCAGTGGAGGAGAAATAAAGAATTTCCTTATGGTTGGTGGTATGGTGTTGTGGGCCACTTG GAGTCCTGCAATGGAGATGAAAATTATTGCCGCTGTCATAGTAATGACACAGTGGTGCTAGAATTCAATCACTACACTCC TGGCTCGCGATGGAGACAAACCACTGTCAGTAGGAAAGACCATAGAGAGGAGGGAAATGAGGCTGATGGCTTTTATGGGG GAATAAGAAAGATTAAGAGTGAATCTGAGATTTCCATTTGGAAACGCCTTTGGCCATCTGAAGTCTTGGATTAG
Protein sequence (LotjaGi6g1v0177900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLYFITCFSFFLFLKSLLLKPLPSWATEMRLLSLLFCQELSVSKLFWNLPWLGFHCQIPSRMSLMKKSLSSRVENDDQE DSQDLSVLDLPDLALECILERLPPSALCQMAGVCRSLRESCVSDHLWERHMKQKWGKVIGPAAYREWKWHVASTRNVGGL KHGKQRGLMRFLSLRWPFPWMKLKGDPNVRSKQGSFSPVDSVMSWYLALETGNFWFPGQVYNRENGHVGFMLSCYDAEVS YDSRTDTFQARYPPHGRRTDARECGIPWERIRAPPVDTSPHDLHISGCLHDLHPGDHIEIQWRRNKEFPYGWWYGVVGHL ESCNGDENYCRCHSNDTVVLEFNHYTPGSRWRQTTVSRKDHREEGNEADGFYGGIRKIKSESEISIWKRLWPSEVLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 397 | 397 | 1.4E-205 | – | |
| PANTHER | 1 | 397 | 397 | 1.4E-205 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 15 | 14 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 397 | 377 | - | – | |
| Gene3D | 68 | 158 | 91 | 1.4E-9 | – | |
| ProSiteProfiles | 84 | 130 | 47 | 11.061 | ||
| Pfam | 87 | 130 | 44 | 9.8E-9 | ||
| SUPERFAMILY | 88 | 156 | 69 | 1.07E-11 | ||
| SMART | 90 | 130 | 41 | 8.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0177900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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