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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0179300 |
| Transcript ID | LotjaGi6g1v0179300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein GOT1; TAIR: AT3G49420.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|Q6NMM1|GOT1_ARATH Vesicle transport protein GOT1; TrEMBL-Plants: tr|K7L3E9|K7L3E9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0179300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47120020..47125287) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAAAAAATAAACATTAAATAACTAGAATTAAACCAAAATATTTAAGCGATAAACGAATCCTCACATTCTATTGGCC AAACAACATCATCATCGATAGATTTTATATTTTGCGAAAAGAAAAAGAAGGACATACAAATTAAAACGAAGCGAAGCAAA GAAACTGAAAAACAGTGAAGACATCAAGACAATCATCACACTGTAGCTCACGCGCCTCTTCTTCCCTCTCACGTAACCGT TCCGTCTCCGACGAACTCAATCCTCAACTTCCAGTCTTCCACCACCGCCACCTCTTCCGCCTGCGATCGCCACCGTGCTC CGGCGAATCCACGCTCCTCGCAAACCGGTAATCTCGCTCTTCTTCCTTTCTCTCACACACATCGTGCACAAGCTTTCTCG CTGATTCTTAAATTTTGCTGGATCCCTCCCCTTCCGTTACCGATACTGCAGCATGATGAGAGATCCAAAAATCGTTTCAA TCATCGTTGCGTGAATTCTTCGGATTAATTTCACCATCAATTTTGGATGAATTCGCATTTGTGGCATGAACATTTTTCTG TGAAATTATTTTTCTCCACTCATTTGATGCGTATGACACTTTTGGAGTATATATTGTATTTGCTATTCTGCAATTCGGAA CTGTTCCTAAGATCTGGTTTGTGTAAACTGTAAGTTCTGGTAGAATCTGCAGTAGAAATGTATTTTAGGGTGGCTTTAGG ATGTTGTTAAGGGGAATGTCTAAGTTTTTGAACAATGGATTGCTGAAGCTGCAAGGTTATGATTGTAGTTAATTTGCTTT CAGGTTGAACTATTATGTTTATTGGTGATTAAGTTTTTCACTTCTTCTTCTTTGTTCGGAGCTTTTTTCCATCTATTGCA TTTTGTATCAAGGTTAAATACATGTTAAGGTTCAATACAAATAATGAACACTCTAACTTTATGTTCGTAGCACTAAATTG GAATCGACAATATGGAAAAAATTGAAACTAGTCTTACAAAGTTCATTGGTTGTAGAGTAGTGTAGTACTAGTGGTGTTTA TTCAAGATGACTACTTCGTTTCGATTTTACTAATTCATATTGACCACTTATATAGGTAAGGATTAAGACTAGGAGTGTTT TGCTATTTTTCTGTTAACATGCATGGTGGGGAAGTTCTACTATTGTATATTTATATAAACTATTATCTTGGTCCCTGAAA AGGGTTAAACCTTAATATGAGTTTCGAATCTTAAAGATAATTGGCATCAATTTAGTCATTGAAACACAAACTACAAAGTG ACATCATACTGGTTCTTTCATGAATTCTGTTGCATGAAGATGGGGTAGCAGAAGCAAAGGTGGTATTGGCTGGTAGTTTC ATTTGGTGGTGATTTGTTCACGCAAAGTTGGCGAGGGACTTCAACTGAGTTTTGCCACATGCAGAGTGTCTCAGAGTGGC TGTTTGTTTGCGGTGAAAGAAGGGTCAATAGTGAAGTGACTTTCGACATGCATGGAGGGAAAAATGTTTATGGTGGGTAA CAAGGAGAGTTGTGCAACATGGCTACTGTTTTGATGATGTTGATTTCTTTTCTTGGTGGAGTGTGTGAATATGAGGGGCA GTCATAGATATGTTGTCATGGTTGGTGTTGGGGACTAATTTTATGCACCCTTGTAGTGTTGGGGACAAATTTGGTGATTC ACTCTTAAAAGAATCCTGGGTTAAGTTCAGGGGTGAAGGACAATGGACTGAGTTGTAGTTGGTGTAGATTTTTTGCTTTT ATACAGGCCGTGTATTTTTGTTATTGTTGATTTGTATTGGGGTGGTTATGCGATGTTGTTTAGGTTCCTGGTATTATGTT TTTCTGTGGTTATGAAGGACTGCTTGACAGTCTCTTTGGGGGAATTTGCTAGGTCACATTTTAGTCACCCTACTTTAGAA ACTTGAAAAGAATAAACTTGTTTCTTTCTTTGCACCCATCTCTGTGTGTGTGTATCTAGTATGCCTGCTGTATTAGTTCT TCAGATAGCTAAGGATGAAAAAAGATGTCAGAGTATGTGTCTGTACGTTTACAAAATGCTGATTGGAGAATGGGTGTTAT TCTGGCTTCTTCATGGGTATTTGCTGGGTGTCTGCAATTAGAGAAATCCTAGCCATTAGAGAAATTCTAGAAGCTCTGGT TCAAGGAGGCATAGAGAGAAATTGATTTGGGAGAGGAAGAAGATATTGACATGGAAAATTGATGTCAAGTTGTCAACTAT TTTCAGGGACTAAATTGATGTCAACCCTATCTTCCAAGTAGCAACGTGGCAGTTTACTCTATATTTTCTAAAAATTCTTT AATCTTGAACTAAACATTGGGTTGGCATAAGGCATTTATACTTTACGTGCATCGGTGCATCTCTTCTACTTCATTGATGA TTAGAATTATCCTTCTCTTGCACCTTAACTGCTATCTCACTAAGTTTCTAAGCTGCTCTTTTTAAAAATGCTTACTTATT TTTCTTCTTGTGCTTTTCTTTGAAAATGTGCATTTTTGCTTACGAAATCTATTGAAGATTTGAAAACTTCCGAATATATT TTAGCCAGTGCGAGATGAATGGATTTTTCATATCTCCTAGGATTTTTATCCCCGGTTATGATATTTCAGTATGATCTTTT TGAGTCAAAATTATCTGATAGCATGTTCTATTCACATTGATTTATTAACTGACTTTATTTCTTTTTTCATGTGTTTCAGT GAAGGCAAGGCACTTGAACATCTGAATTGTTGGTACAAAATGGTTTCCTTTGAGATGAATGATCGCAAGAGTAAGTAGAA TCTGATTTTTCTTGTTTTTACTGGAAATAATGGCATCTTTTGATTTGGTCTTCTACCCTAAGTGCTCACATCTAAGGATA GATTCATTCAGAGTTTCCTATTGTTCCATAAATGAATAACTTGTTCAATTCATTTATTTAGGGAAGAGTTATCTTGTTGG AATAATTCTGATTTATGTTAAGGCTATGCAAATTTGCTTGGTTTCTTCTTTTTCTCTACCTTGCCTATTTCTTGGTTTTG TTAATGGTTGACTAAAGGGTTCAAATTACATAGTTTGTGAAACACTGATCTAGAGTCCTTGCCTTATCATATTTTCGAGA GTTAATGTATTTGTTGCTGCAAGTCCAAATTTATTTGCACTTAATGCTGCCATCTATTTTATAATCCTTGAGTTATTAAA CATAGAGCGCGTGTGGTTACTTAATTGCCTTTGTTTTTAACATGAAACAGAGATTGGATTGGGATTAACGGGCTTTGGTA TATTTTTCTCATTCCTTGGCGTTATATTCTTCTTCGACAAGGGATTGCTTGCAATGGGAAATGTAAGCTTCATGTTATGA CAAGCTTCATGCTTTAGTTTTTTATATTTTTGCTTGTGCTATTTTGCTTAATGAGAACTTCTATAACACCCTTCATTGTG ACTCAAATCAGATCCTCTTTATTTCTGGAGTATCTGTCACCATTGGACTGAAATCCACCATGCAATTCTTCATGAAACCT AGTAATTTCAAGGTAAACTAGTTATACATTTACCATTACAACCATTAGCATCCGATGTGCCCTTCATGTTAAATTCTCCA CTTCATCTTTTACTTCTCATTTTCTGATTGTGTAGGGAACAATTTCATTCGGTATTGGATTCTTGATTCTTATCATGGGT TGGCCTATTCTGGGCATGATTGGGGAGTCTTATGGGTTCATTGTACTCTTCAGGTTCAGTTGAAATCAAACAATAACTAT GTTTTATTACAACAACTCTATTTTATTAAGTATTTTTAATACTTTCAAGGCTAATTATGTAATTATCTTTTGCAGTGGTT TCTGGCCCACAGTGGCTGTTTTCTTGCAGAAAATTCCAGTTCTTGGTTGGTTGTTTCAACAGCCATATGTTCGATCAGTA AGCAATTGTGCTGAAACAATGAAATTTCCTTTTAGTGGTTTGCCTATCATCTCAAGCATTCATATAAGCCTTCTATTATA TCTATTTATATAGTATCCTTAAAGTTGGTTCTGCTCATCCTTCAAGAGATAGTGGTATGCGTCTATGATTTCTTTTGCAT AGTATGCTGTAACAATGAAACTAAGCATTTTCTGTCAACTTGCAGTTGCTTGACCGCTATAGAGGCAAACGGGTGCCTGT GTAATCACAAGGATCTGTGGAAACATTGCAAGATCATATGTAAAGCCCATGTAAAGAAAATACTCGCATAACTCTGAATT GAGTTCTCAATTTGATGGTAGAACGTTGTCATGATAGTCCTTTAAATCGAAGGAAAATGGAAAGGAAGGAAAAAGGTTTT GGTTTTTATTTACAACTTTGTTTAGCCCTGTTTCAATGTTCATGCTTCTGGAAAATCAATTGATCATCGGAGTTCTGCTA CTTCATCTACGTTACTATTCTAATCAGACAGACATCTATGGTAAATATCTGTACTCGGAGTATCTTGGTGGCATTTTGTT TACAACTCGTCAAAGGAATAAAACAATTAAATGATATCAAATGGAGTTAGTACAGTAATACTAATATGGGACATTATTTT TTATTCTTTGTAACATAAAGTGTGATGAGTCCGAATTTGCTGTTGAGTTTCTTTTTTGAAATATTAAATATCTTAATATT AATTCTCTCATCTAATTATATTTTTTAGAATCAGGGTTCCTTTTGTTGTCTGATGATAATTGAGAAATCATGATTACTTA TATCTGGGACTTGGACTCCGTAGTTGTTCTTTAAAATCATGGAATTGTCTCTTTGTTGTCAATTTTTATAATTGCTATAC ATGGTAGTTGTTAAGTTGACAAGATATATCAATAGGGATTATTTTCATGTTTCGGATTGAAATGCTCTATCGAGGGGTTT CCATTATTAAAAGATGTGTTGAGCGTAGACAAGGAATTGGAGAAACATGGAGGTGAAACTGACAACACTCAGGGCTCGTT TGGTACACCGTATTAGGCGTGATGGTATAAACTTGTACAATACATTACGAGGTTATCTATTGTTTGGTGCTCACATTGTA TATAAGCTTATACATCAATCTCCTCTTATACATCAAAATGATGGATTATTTAATCCACCCTATAGATGATGGATAAGGCA TGATAAAAGTGCAATGTATAAACTACTTCAATATATTTAATCAACCGCCCCCACAATCACCCTCCACCACCACCGCCTCC ACCACTACCAACACCACCACCGTCACTGCAGCCACCACCGTCGCCGGCACCACCGTCGCCACCACCAC
CDS sequence (LotjaGi6g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCCTTTGAGATGAATGATCGCAAGAAGATTGGATTGGGATTAACGGGCTTTGGTATATTTTTCTCATTCCTTGG CGTTATATTCTTCTTCGACAAGGGATTGCTTGCAATGGGAAATATCCTCTTTATTTCTGGAGTATCTGTCACCATTGGAC TGAAATCCACCATGCAATTCTTCATGAAACCTAGTAATTTCAAGGGAACAATTTCATTCGGTATTGGATTCTTGATTCTT ATCATGGGTTGGCCTATTCTGGGCATGATTGGGGAGTCTTATGGGTTCATTGTACTCTTCAGTGGTTTCTGGCCCACAGT GGCTGTTTTCTTGCAGAAAATTCCAGTTCTTGGTTGGTTGTTTCAACAGCCATATGTTCGATCATTGCTTGACCGCTATA GAGGCAAACGGGTGCCTGTGTAA
Protein sequence (LotjaGi6g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSFEMNDRKKIGLGLTGFGIFFSFLGVIFFFDKGLLAMGNILFISGVSVTIGLKSTMQFFMKPSNFKGTISFGIGFLIL IMGWPILGMIGESYGFIVLFSGFWPTVAVFLQKIPVLGWLFQQPYVRSLLDRYRGKRVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 140 | 140 | 7.8E-75 | – | |
| PANTHER | 1 | 140 | 140 | 7.8E-75 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Pfam | 21 | 115 | 95 | 1.6E-13 | ||
| Phobius | 33 | 37 | 5 | - | – | |
| TMHMM | 35 | 54 | 20 | - | – | |
| Phobius | 38 | 57 | 20 | - | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 112 | 140 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0179300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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