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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0179300 |
Transcript ID | LotjaGi6g1v0179300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein transport protein GOT1; TAIR: AT3G49420.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|Q6NMM1|GOT1_ARATH Vesicle transport protein GOT1; TrEMBL-Plants: tr|V7AZM0|V7AZM0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0179300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47121124..47122067) extracted from Lotus japonicus Gifu genome v1.2.
TTAATTGCCTTTGTTTTTAACATGAAACAGAGATTGGATTGGGATTAACGGGCTTTGGTATATTTTTCTCATTCCTTGGC GTTATATTCTTCTTCGACAAGGGATTGCTTGCAATGGGAAATGTAAGCTTCATGTTATGACAAGCTTCATGCTTTAGTTT TTTATATTTTTGCTTGTGCTATTTTGCTTAATGAGAACTTCTATAACACCCTTCATTGTGACTCAAATCAGATCCTCTTT ATTTCTGGAGTATCTGTCACCATTGGACTGAAATCCACCATGCAATTCTTCATGAAACCTAGTAATTTCAAGGTAAACTA GTTATACATTTACCATTACAACCATTAGCATCCGATGTGCCCTTCATGTTAAATTCTCCACTTCATCTTTTACTTCTCAT TTTCTGATTGTGTAGGGAACAATTTCATTCGGTATTGGATTCTTGATTCTTATCATGGGTTGGCCTATTCTGGGCATGAT TGGGGAGTCTTATGGGTTCATTGTACTCTTCAGGTTCAGTTGAAATCAAACAATAACTATGTTTTATTACAACAACTCTA TTTTATTAAGTATTTTTAATACTTTCAAGGCTAATTATGTAATTATCTTTTGCAGTGGTTTCTGGCCCACAGTGGCTGTT TTCTTGCAGAAAATTCCAGTTCTTGGTTGGTTGTTTCAACAGCCATATGTTCGATCAGTAAGCAATTGTGCTGAAACAAT GAAATTTCCTTTTAGTGGTTTGCCTATCATCTCAAGCATTCATATAAGCCTTCTATTATATCTATTTATATAGTATCCTT AAAGTTGGTTCTGCTCATCCTTCAAGAGATAGTGGTATGCGTCTATGATTTCTTTTGCATAGTATGCTGTAACAATGAAA CTAAGCATTTTCTGTCAACTTGCAGTTGCTTGACCGCTATAGAGGCAAACGGGTGCCTGTGTAA
CDS sequence (LotjaGi6g1v0179300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATATCCTCTTTATTTCTGGAGTATCTGTCACCATTGGACTGAAATCCACCATGCAATTCTTCATGAAACCTAG TAATTTCAAGGGAACAATTTCATTCGGTATTGGATTCTTGATTCTTATCATGGGTTGGCCTATTCTGGGCATGATTGGGG AGTCTTATGGGTTCATTGTACTCTTCAGTGGTTTCTGGCCCACAGTGGCTGTTTTCTTGCAGAAAATTCCAGTTCTTGGT TGGTTGTTTCAACAGCCATATGTTCGATCATTGCTTGACCGCTATAGAGGCAAACGGGTGCCTGTGTAA
Protein sequence (LotjaGi6g1v0179300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNILFISGVSVTIGLKSTMQFFMKPSNFKGTISFGIGFLILIMGWPILGMIGESYGFIVLFSGFWPTVAVFLQKIPVLG WLFQQPYVRSLLDRYRGKRVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 102 | 102 | 2.7E-51 | – | |
Pfam | 1 | 77 | 77 | 8.5E-11 | ||
Phobius | 1 | 5 | 5 | - | – | |
PANTHER | 1 | 102 | 102 | 2.7E-51 | – | |
Phobius | 6 | 24 | 19 | - | – | |
Phobius | 25 | 30 | 6 | - | – | |
TMHMM | 31 | 53 | 23 | - | – | |
Phobius | 31 | 49 | 19 | - | – | |
Phobius | 50 | 54 | 5 | - | – | |
Phobius | 55 | 73 | 19 | - | – | |
TMHMM | 60 | 82 | 23 | - | – | |
Phobius | 74 | 102 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0179300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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