Transcript — View — Lotus Base

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LotjaGi6g1v0180800.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0180800
Transcript ID	LotjaGi6g1v0180800.1
Lotus japonicus genome version	Gifu v1.2
Description	Lateral root primordium 1; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp\|Q94CK9\|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr\|V7B6F1\|V7B6F1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0180800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:47247836..47250684) extracted from Lotus japonicus Gifu genome v1.2.

CTTATATCAAATTGATAATTGGTGAGAGAGAGAGAGAGAGGGATATAGAACTTAGAAATTTATAGGGACGACGAGGAACC CACCTTCAATTCATCCATGTCTGCTAGCTTTCTAGAAAACCAAGCTGTAGAGAGAGAGAGAGAGAGATAGAATCACAGGG GCCGGGGACTCAAGTTTCTGAGAAGTAGAGACAAGTGGGAAAGCTCCTCAGAGAAGAAGGGGAAGTGAGTGGAAAAGAAA AGATAAAAAAACAAAGCATCTAATGGAGAAGATGATGAAAAGAGAGTGAGTGGCAACAACAAAAGTCGTTACTTATTGCA TTATTTTCTCTGCTCACTTTCCTTCTTTCTTCTGAACCATATCCAGTCATCCACTCACTCACTCCTTTCTCCTATGAGAT AAAAGCCAGCCACAGTGACAGTACCAGCATAAATGAACCCACCATACCAGCTGAAAAGATAAAATTCCAAGCCAGAACCA GAAGAAGCAGCCGCAGAGATAATTCCAGAAAGACCCCACTCCACTACTCCCCCATTAGACACGTCCCACCTATAGATAGT TCTTACCTTCCAATATATATCTCAGAAAATCTAAGAAACTTTTATTTAAAGTCAGACAATCTTAACCAACATCTCAATTT TATTTTATTAATGTTGTTTGGTTTTGTTTAGACAAATTTATCAAACACCTTCAGTTGTGGCTACAACAAGGAGGTTGCCT TCTGATTCTGGTGGTGCTTTTGCTGACTGGTCAGCCACTCCTCCATCCTCCTCCGCTGCTGCCACAATCCCCGGCCACGC CTCCGACCTCTCCCTCGGCTTCAATGCTGCCTCCGCCGGAATGTGGCCCGGCGCTTCTTCCGCCAGGCCAATCAGCTATA GCCACGTGGCGTCCGACATGGTTGGCCTCCGCGATGTTTTCCTGGTGGCTCCGGCCTCCTCCTTCAACCACCACAGCGAA AGTCTCATGCCAGATCCGCACTTGAACAGTTCCAACAACCCCGTAACCGCCCTCGGCGTTGGCATGATCCCTCTCCTCGG TGGTGGAATTCAGTTATGGCACGACCAACAGCAACAACAACAGCATGAGCAGAATTATTTGAAGAAACACGCTCTTGTTG AGCACGATAACGGTGATGGTGGCGGTGGAGGGATTACGGCGTTAGTTGCAACCAGCGGCGGCGGGACGGCCACGTGTCAG GACTGCGGGAACCAGGCGAAGAAGGATTGCGGACACAGGAGGTGCAGGTCGTGCTGCAAGAGCAGGGGTTTTGATTGCCC TACTCACGTGAAGAGCACGTGGGTTCCCGCGGCGAGGAGGCGGGAGCGGCAGGTTATGGCGGAGAGGGCGGCGGCTGCGG GGTCCAGCGCTTCCACTTCCGGTCACGCTAAGAAGCCTAGGCTTGTTGCTTCACAGACCACAACCACCACTACAACCTCT CACACTTCCACTTCCAACACCACTCCCCCTAGGAGCTTTGAAACTAGCTCTAGCCATCAAGGTTTGTTAGTTGCTAGTTA ATTTTTCTAACTAATTACTTTGAATTGTGTAAATGACTCTAAATAAAGTTTGCCATAAAGTTTCAGTTGGTTTATTGAGT ACTAACAAAATTAGGGTTAACCAACTTAAACTTTATTTAGGGTCATTTAGATAACCTCTATTATTATTAATATTGATTAG GGTCGACTCACTTCCAGTTTGAGTTGCCTAGGGTTGATCGACTCAAACTTTATTTATCATCATTTATGTTTTACATCGAC AGTGCATATTTTTAAACTCTTTAGATAATCTTAATTACTATTAATACTGAAATTGTTGTGTTAATTAATTGTGTTTGTTA TATGGGAGAATTGAGTTGAGTTTTATTGAATTGGAATGTGTGCAGATGTAAGTTTCAAAGAGTCGTTGCCTCGTCAAGTG CGTGCACCGGCGGTGTTCAAGTGTGTTCGAGTGACGGCGGTGGATGGTGGCGAAGATGAGTTTGCCTATCAGGCAATGGT GAAGATTGGTGGACACTTGTTCAAAGGGCTTCTTTATAATCAAGGGGTTGAGAATAGAGATGGTTATCCTGATCTATCTG AATTGCATTTAGGTGGTAGAAATGGGGTTTCATCTTCATCTCCAATGATGAATCCTTCTTTTGATGTTTATGTAGCTTCA GGTAGTGGTGGGTTTCTTGGAGGTTCATCAACCTATGGTAACCCAATATAGACTAATTATTTCTTCACATGTTGTAGTTG TAGCCTAATTAGGGTGGGGTTTATTATATAATTAATTTATAAATTAATGTTGTTCTAAGCTTGTATCTTATCACATAAGT CATTGTCTGCATTTTTCAACTCCTTGGCTTTTGATCTCTCTTTTCTCTAATCCATCTCTAATTCATCTACCCTTGTGCTC TGTACTAAACTTTCTCCATGGACTTTAGCATGAGAAGTGGTTGTTACGTCACCATCAATATGTGGTGGTCATTGTCAATT TGCCATCCTAGTTTATTGGTCACAACACATCTCACTGATGCGTATACAGCCTGCCAAGCTTCTGTATTCATGAAGCCATG AAGTGCTCTATTTTTCTCTTGTTCTTATGTGGAAATTCGATCTTCTAAGCTCCAATGCTATTTTAGGCTCAGTTCTCCAT GTGTATAATAATATTCTAATCAATGCTGCGTTTTGGGGCTCAATGCACATGATGCTTTTACCTAAACCAGCATTGTCTGC ATTCTCCACAGTTTCATTCTTTTGCTTTGCTGCTATCCTGTTTATACAGTACTGCTTTTGCATTCTAGTATGAGAATATT TATAATATTTTATACTATGATTACAATATTCTCATTAGTCTAATCCCAG

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGCCCGGCGCTTCTTCCGCCAGGCCAATCAGCTATAGCCACGTGGCGTCCGACATGGTTGGCCTCCGCGATGTTTT CCTGGTGGCTCCGGCCTCCTCCTTCAACCACCACAGCGAAAGTCTCATGCCAGATCCGCACTTGAACAGTTCCAACAACC CCGTAACCGCCCTCGGCGTTGGCATGATCCCTCTCCTCGGTGGTGGAATTCAGTTATGGCACGACCAACAGCAACAACAA CAGCATGAGCAGAATTATTTGAAGAAACACGCTCTTGTTGAGCACGATAACGGTGATGGTGGCGGTGGAGGGATTACGGC GTTAGTTGCAACCAGCGGCGGCGGGACGGCCACGTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCGGACACAGGA GGTGCAGGTCGTGCTGCAAGAGCAGGGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCCGCGGCGAGGAGG CGGGAGCGGCAGGTTATGGCGGAGAGGGCGGCGGCTGCGGGGTCCAGCGCTTCCACTTCCGGTCACGCTAAGAAGCCTAG GCTTGTTGCTTCACAGACCACAACCACCACTACAACCTCTCACACTTCCACTTCCAACACCACTCCCCCTAGGAGCTTTG AAACTAGCTCTAGCCATCAAGATGTAAGTTTCAAAGAGTCGTTGCCTCGTCAAGTGCGTGCACCGGCGGTGTTCAAGTGT GTTCGAGTGACGGCGGTGGATGGTGGCGAAGATGAGTTTGCCTATCAGGCAATGGTGAAGATTGGTGGACACTTGTTCAA AGGGCTTCTTTATAATCAAGGGGTTGAGAATAGAGATGGTTATCCTGATCTATCTGAATTGCATTTAGGTGGTAGAAATG GGGTTTCATCTTCATCTCCAATGATGAATCCTTCTTTTGATGTTTATGTAGCTTCAGGTAGTGGTGGGTTTCTTGGAGGT TCATCAACCTATGGTAACCCAATATAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWPGASSARPISYSHVASDMVGLRDVFLVAPASSFNHHSESLMPDPHLNSSNNPVTALGVGMIPLLGGGIQLWHDQQQQQ QHEQNYLKKHALVEHDNGDGGGGGITALVATSGGGTATCQDCGNQAKKDCGHRRCRSCCKSRGFDCPTHVKSTWVPAARR RERQVMAERAAAAGSSASTSGHAKKPRLVASQTTTTTTTSHTSTSNTTPPRSFETSSSHQDVSFKESLPRQVRAPAVFKC VRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVENRDGYPDLSELHLGGRNGVSSSSPMMNPSFDVYVASGSGGFLGG SSTYGNPI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31604:SF30 View details on PTHR31604:SF30 Search for proteins/transripts with this domain View external data on PTHR31604:SF30	20	327	308	4.5E-124	–
PANTHER	PTHR31604 View details on PTHR31604 Search for proteins/transripts with this domain View external data on PTHR31604	20	327	308	4.5E-124	IPR007818 Show description in modal box View details on IPR007818 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05142 View details on PF05142 Search for proteins/transripts with this domain View external data on PF05142	116	276	161	9.4E-60	–
TIGRFAM	TIGR01623 View details on TIGR01623 Search for proteins/transripts with this domain View external data on TIGR01623	118	160	43	3.2E-26	IPR006510 Show description in modal box View details on IPR006510 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	163	226	64	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	173	225	53	-	–
TIGRFAM	TIGR01624 View details on TIGR01624 Search for proteins/transripts with this domain View external data on TIGR01624	228	275	48	5.2E-26	IPR006511 Show description in modal box View details on IPR006511 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0180800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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