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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0184800 |
| Transcript ID | LotjaGi6g1v0184800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G10260.1 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I1KXW8|I1KXW8_SOYBN Reticulon-like protein; Found in the gene: LotjaGi6g1v0184800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47903361..47907565) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATCAGTACGTTAAAAATAAATAAATTATTTGATAGAGAATATTGGGGTTCCATCATGTACTGTTACATTGAGC TAAAGATTCAAAGTACAAACGCTACAAAAACAAAATTGAACACATAAAAGAAGCAACCGATGATTTGGTTTGGTTGGCAG TTGACTAGTTCGTGAGTCATTGTTGTTGTTCTGCTCTTGCATGCAATTTATTGGACTTTGAATTGAATAAAGTAAACTTG TTATTTCATAGCAACCCCATCATTTTGTTTTCCCTCTCTGCATCACCATTTCGTTTCAATCTCCCTCTGCTGATTCTGGT TAGTGAATTTCATTTGCTTATGCTGCCAAGTTTCATTCTTTCTTCTATCACTCAATTGATTGATGCTTGTTGTTCAAGGG GTTGAATTTATTTATGGGGGTTTATTGTTTGTTTAGCCAAGTACTTGTGTTTGAATCTTTTTCTGATTTTAGATTGATCT GTGTCTTGATATGTCAAATGCTCTTTATGCTTGTGAAGAAAACAAAAAAAAAATAAATGGTATCCCTTTTGCTTTCCCAA TTATAATTCTCCAAAAAAATTTATTTTTCTGATTTCTGATTTGGCTTACTAACTCTTCTCATGTGTGTGTGTCTTGCCTC AAGCTACAACTTGGTCAGTTGCCTCCCAGTTTCACATTTTTTGCTTTCTTTCTAATGATTGCTAACCCATTTTATTAGTA AGCCATTTTGAAAGTTGGTGCAACATTTATGAAGGGGATCAAAGGTAGTTTTGCTCACCTTTTGATGATGAATAAACCAG AGAATGTGAATGATATTTGATTATGATGCTAGCTACAGTATTACATAAAGGGTTTGTTTGTGAGTTGAGTTTTGGAGGGC AGAGAAGGAAAGGGAAGGGGAGGGGGAGGATTATGGCCTATGGGAAACCCTCCTCTTGTTTGGGAGATTTTAAAAAGGGC AAGAGTTTGGGGAATTTTAAAAACCCACCAAGATCCTTCTTTAGTTGTTCTCTGGAGTTTCCTCAAATTGGAGGGTTAAA TTGACTAAGAGTAGCCTTTTTAGACCAACAAGATTTTTTTGGTTTTGGTTGGTTATAAGAGTAGCCTTAATTTATGACTT TATTTTGAAGTTAGCAATATGGTCACCTCTTTTATTATGTCTCAGAAAAAAAAAGGGACCTCATAAATTCATTTCATGTG CTGGTTTTCTAATTATTAGTTAAAATGCAGTAATGTTGGTTTTAGAAATTGGGGTTAGGCCGCACTACCCCCCGTATAAG GACTATTGTAGTCATATCTCTAGTCAATATGAGACCCTAACGGTAGGATATTAGAGCTATTTTGTAACAATCTTGAATAA TGTTGTGTTTGGTTCTTATTAGCACAGGAACAATGTCTGAGAAAATTACAGCTGCGAACCTTCTTTACAACCTTGTGGAC ACATTTGCTGAGAAGGGAAAAGTTGAATCATTCTTTGAAAACGAGAATTCAAACTCAGCAAGCTCTCAGGTCAACAAATT GTTTCAACGCCAGAAAACCGTCCACCATCTTTTAGGAGGTGGAAAATGTATGGTATTTATAGTCAATTTATAGTAAAATG TGAAGTCTTAGCATCAATTAAACCATTTGAGTCACACTTTTTCTTTTTTGTGCCTTTGAATTTCATAGCTGCGGATATCT TGTTATGGAGGAACAAGAAGATTTCTTCTAGTGTTTTAACTGGCGCAACAACTGCATGGGTGCTTTTTGAATGGCTTAAT TATCATTTTCTTACTCTTTTAAGCTTTGCTTTGGTTCTTGGTTTGCTTGCACAGTTTCTATGGTCAAATGCTTCTAGCCT TTTTAACAGGTTACTCTCTCTCTCTCTTTCCCCTCCTCAATTTTATGTGGATATGTTACTCAACTTTCAACTTCATTTAA AAACTTATTTGGTTATACAAGAGGTTCAAGCATCTTTACTTCTCTGCTTTTTCTTTCTTTAGTTCTGTTAATGTGTTTCA ACATTTTACAGCTTTAGCTAAGTATCATTTGTTCTTTATGTTAACAGTACGCCATCTAAAGTGCCCCGTTTTATTCTCCC CGAAGAATTCTTTGTGAATATTGCTCATGTAGTTGGCGATGAGGTTAACCGTGGTCTGAGATTTCTTCAAGATATTGCTT GTGAAGGAAACTTGAAGCAACTGCTCATTGTATGTTGGTACTTATGTTTATTTTCTTTGACATTGCCATTTATCATCCAG AGTCTATATCTTAAAACATGTTGTTTTCCTCAGTGCTTGATTTTTCATTCAGTTCCTTTTATGTTGAAGTTTCCTACATA ATTTCTAAATTGTAAAATGTTAGCGATATTTGGTTAGTTTTCATGGCAAATGCTTGTTTGACACTGTCTTCTGGAAAAAA GGAGCAATATAATTTTGAAAGAGTGTTGCTAGTATGTCATGTGTGTATACTAAATTTAATAGCACCTTTTAACTGGTGCC ATTTAGAAAGAGATATGCTGCTTGAATTTGGGGGGTAGAATCAAGTAAATTAAACCTAACACACTAGGAGCTTGTGAAGG TTATTTCTATGCTAAGTATCAATATACGATATGTTATATGATCATGTCTCATCATGTCACATTGTTGTCATCAGAGATAT GAACATTATGGTGCTAAGACTATATTGAAAGCACCATCATAATGGGGCACCCTCAACCTCAACTGTACCATTTGTAACTT GTTTAAACCATTTATGTACCTTAAATTATATTTATTTCAACATGTAGCAAAGAAACTTAGATGAAATTTACTATTTTATC ATAGGATTTGTGATCAATGGTTAAAAAATCCCCAGGTTGTTGGAAGTTTGTGGGCTGGTGCAGTGATTGGGAGCTGGTGC AATTTTTTGACTGTCATATATATTGGTGAGTGATCTTTCTTTGCATTATTTGATAGTTCTACTTCTAACTTAATTAACAT GCTGACCCTAAAATTTGCTTATACTATCAACATTGATGCCTTGTAACCTAACAGTCATGGGTTCTAGTTGTGGAAATGGT CTCTCCCATTATAAGAAATCTTTTCTCCGAAAAAATTTGAACTGTTGTTGAAATATGGAAGTTGTACAATATTTACCCCC TTTTTAGGTGCAAAGTATACGTGATAAAAACTAGGGCCCTAAAAACTACTAGCATACTAATAGCAAAATGAATTTGCACC ACCATTGAGTATTATGGGAAACATTTTTTTTTAGATATATTGTGGTAATGCAAGGATGAGGGAATTTTGATGGTAACAGG GTACATGAGAACAGAGACACACCTAGTTAAGACTGAATAATATGTTTGGATTCACTTATAGTCCTCCCAGGTTTACTTAT CATCCCATAAAAGCTACTTCTAGTAGCTTATCCTAGAATCACTTCTCCCTCAAACATGAAAATCTATCGAATTTCCAAAC ACCTTTGTTTATAAACAAATATAAGCTCAATGTTCATCTATATTATTTTGTGGAACTATTTCTTCCAACCACTCACATGG AAGACACCTAGTAGAAGTTCAACAATGATGTATTTTTTCTCCTTCTAGTTGATTATTCATGGTATACTTGATTGCTGAAA CAAATATATATTTTGTCCGAAGGTTTTGTTGCTGCATACACACTCCCAGTTCTCTATGAAAGATATGAAGATGAGGTTGA CAATTTCTTCTACAACTTCCTTGAACAGATACAAAATCAATATCAAAAGTTGGATGCTAGTGTGCTGAACAAAATCCCCA CCAAGGGGAATGTGAAAGGACATAAGCATAACTAGGTTTATCCATATGTAAATAATTTTGACATTCAAAATGACCATCTT TCATTCATGATGGAAATTGGGAAGGGCTAAAGGTAATAAATAGGGGGAATAAAAAAAAAATTACCATATGAATGATATTG ATAGGAACAAAATTGCATTTATATATAGTTGTTGTTTCTGTTGTTCCTTCATCTAAGTTGTGGTCTTGAAAACTAGTTAT CGCATTCTTTGACTGAACAAAGAGATATTGATATTCTAGCATGTTTGGATCTACTTTAATCCTTCTAGAATCATTTTTTC TCCCAAACATGGAAGCCTACTGAGTTTCCGAACACACTTGGCGTCGGTTGAAATCTTCTGAGGTCACTTACTATGCATGG TTTATGTTATCCCTGGGGAAATTTTTGTTACATCATATCTATCAC
CDS sequence (LotjaGi6g1v0184800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGAAAATTACAGCTGCGAACCTTCTTTACAACCTTGTGGACACATTTGCTGAGAAGGGAAAAGTTGAATCATT CTTTGAAAACGAGAATTCAAACTCAGCAAGCTCTCAGGTCAACAAATTGTTTCAACGCCAGAAAACCGTCCACCATCTTT TAGGAGGTGGAAAATCTGCGGATATCTTGTTATGGAGGAACAAGAAGATTTCTTCTAGTGTTTTAACTGGCGCAACAACT GCATGGGTGCTTTTTGAATGGCTTAATTATCATTTTCTTACTCTTTTAAGCTTTGCTTTGGTTCTTGGTTTGCTTGCACA GTTTCTATGGTCAAATGCTTCTAGCCTTTTTAACAGTACGCCATCTAAAGTGCCCCGTTTTATTCTCCCCGAAGAATTCT TTGTGAATATTGCTCATGTAGTTGGCGATGAGGTTAACCGTGGTCTGAGATTTCTTCAAGATATTGCTTGTGAAGGAAAC TTGAAGCAACTGCTCATTGTTGTTGGAAGTTTGTGGGCTGGTGCAGTGATTGGGAGCTGGTGCAATTTTTTGACTGTCAT ATATATTGGTTTTGTTGCTGCATACACACTCCCAGTTCTCTATGAAAGATATGAAGATGAGGTTGACAATTTCTTCTACA ACTTCCTTGAACAGATACAAAATCAATATCAAAAGTTGGATGCTAGTGTGCTGAACAAAATCCCCACCAAGGGGAATGTG AAAGGACATAAGCATAACTAG
Protein sequence (LotjaGi6g1v0184800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEKITAANLLYNLVDTFAEKGKVESFFENENSNSASSQVNKLFQRQKTVHHLLGGGKSADILLWRNKKISSSVLTGATT AWVLFEWLNYHFLTLLSFALVLGLLAQFLWSNASSLFNSTPSKVPRFILPEEFFVNIAHVVGDEVNRGLRFLQDIACEGN LKQLLIVVGSLWAGAVIGSWCNFLTVIYIGFVAAYTLPVLYERYEDEVDNFFYNFLEQIQNQYQKLDASVLNKIPTKGNV KGHKHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 1.3E-118 | – | |
| PANTHER | 1 | 245 | 245 | 1.3E-118 | – | |
| Phobius | 1 | 91 | 91 | - | – | |
| ProSiteProfiles | 59 | 246 | 188 | 43.564 | ||
| Pfam | 60 | 213 | 154 | 2.6E-50 | ||
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| Phobius | 111 | 170 | 60 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 171 | 195 | 25 | - | – | |
| Phobius | 196 | 246 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0184800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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