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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0188300 |
| Transcript ID | LotjaGi6g1v0188300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT5G40780.1 lysine histidine transporter 1; Swiss-Prot: sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1; TrEMBL-Plants: tr|A0A1J7HPB0|A0A1J7HPB0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0188300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48336912..48340253) extracted from Lotus japonicus Gifu genome v1.2.
GTTGATTTATACGGGGATGCTCTGGTCGATTAGGTTCATATACCTTGCAACCAGAGACATATGAGCATTTTTATCACTCC TTGCCATCAAAAATTTTAAGTGATTGGCAAGTAGTTTTTGGAGAGGAATTGAAAGACATGGGTCACACTGATGAAAAACA TAACGTTGTTGATGCCAAACAGAAGGCCATTGATGATTGGCTACCGGTTACGGCTTCCAGGGAAGCCAAATGGTACTACT CAGCTTTCCATAATCTCACGGCCATGGTTGGAGCCGGTGTTCTCAGCCTTCCTTATGCCATGGCACATATGGGTTGGTAA GATCCTCTACCACATTACAATTTTCATCTAACTTTAAAGTGTATGGTTATCAAAATATAAACTCATGTTAATATGTAATA TAATTTTTTTTAATAATATATAAGAGCTTGCTTCCAAAAAAAAATGTAAGAGTGTATGGTTGATTAGTATAGAATTTCTA TTACTACATTTTTGCACACAAAAAATTAGTATTAGTGTATGACCTATTATTAAATTTATGGAAGCGTCATGCTCTTGCAT CCCTTGATGCAGTAACCTGTAAGCTGTGCCATAATCACTTGGAAACAAGCTTTCACTTGTTGTTTTCATGTTCCTTTTCG ATGGAGGTTTGACAGCGGTGTTTTCATTTTCCTATTATTAAATTTGAGCATGACGCTGCATAAAGTAAAATTTTCATCTA ACTTTAAAGTATACATATAAGACCCTCTACCACATTATATATATATATATATATATATATATATATATATATATTGCACA TCCTTATATATACACAAGAACACATGTGTAGTTGGGGTTGGGATTAAAAATGATTTAGTGGTCACGTGTATTTTTATCAT ATCTTTATAATGTATATTCTCATTATTAAAAAAATGTAAATTATTGATCAATATCATTATGATTATCATTGCTTGATTTT ACTTGTGATTCATTTGACTGAAATAATAGGGGTCCCGGCATTACTATCCTTACCTTGTCATGGGTGATCACTTTGTACAC ACTATGGCAAATGGTTGAGATGCACGAAATGGTTCCAGGCACGAGATTTGACAGGTACCATGAGTTAGGGCAGTATGCGT TTGGGGAGAAGTTGGGTCTGTATATCGTGGTTCCTCAACAAGTTGTTGTTGAAGTTGGCACGTGCATCGTGTACATGGTC ACTGGAGGAAAGTCACTGAAGAAGGTTCATGATTCTCTTTGTCCTGATTGCAAAGACATCAAGACTTCATATTGGATAGT CATCTTTGCCTCAGTGAATCTCGTTCTTGCCCAGTGCCCAAACTTGAACTCCATTTCTGTTGTCTCTCTTGGCGCAGCCG CCATGTCCCTCACGTACGTTTTTTGCAATTATAATTTTAATCGGTTGTTTAAACGACACATCATTGATAAGATACCAAAC AAGACACTAAATAAGGATAAAATATTTCGAATTAATGGTCAAATTAGTTCCTCAAAGTATTGGACCTTCTTAAGTTTGTC CATAACAGAAGGAAATACTTGCTCCGTCCTTAATTGTCTAAAATGTCGGTCGAGTTAGTCTTTTTTATCTGACCACAAGG ACTAACATGACCGATATTTTACAAAATCAATGACGGCAGGGTATTTCCTAAAGTTAGAAATGAACTTGTTAGCGTCCAAC ACTTTGAAGACCAATTTCAATAATTTTGATCCTGCTTGTAATTGTTTGTTTAATTTGAACTCATAGGTACTCAACTATCG CTTGGGGTGCTACTATTAAAAAAGGGATTGAACCGAATGTAGACTACAGTATTAAATCGCACAATACCGCTGATGCCGTA TTCAACTTTTTTTCTGCATTGGGAGATATTGCATTTTCCTTTGCAGGTCACAGTGTGGTTCTAGAAATTCAAGCAACAAT GCCTACATCGCCAGAGCTTCCTTCCAAGAAACCCATGTGGAGGGGAGTTGTTTTTGCCTACATCGGAGTTGCCTTCTGCT ACCTCCCTGTTGCTGTGATCGGATACTACATGTTTGGAAATGCGGTTGATGATAACATCCTCATCACACTAGAGCGCCCT GTTTGGCTCATTTCTGCAGCTAACCTTTTTGTCGTTATCCATGTTATTGGAGGTTACCAAGTATGTTATGAATTCATATT GGCTCTTGCCGCTACAACTTATAAGAAAACAAATTGGCTACCTACTTATTAGTACGATATGGATTAGCTAATATTCGATC TCATTATGTTTTATTTTGATATATTATGCGAAAAACAGATATTTGCAATGCCAGTGTTTGATATGCTCGAAACCGTCTTG GTTAAGAAAGCAAAGCTTCCACCTTGCCTTGCACTTCGAATAATAACCCGAAGTGTTTATGTTGGTAAGTGATTAACATT GCCTCAAATTAGATTGTTAGCTTAATAAATTGGTTTTTAGTTAAATTTTTAATCCTTTTTTCATGCAGGCTTGACAATGA TTATTGGCATAAGCGTCCCTTTCTTTGGTTCTCTTCTTGGATTTCTTGGAGGATTTGCCTTTGCCCCTGCATCATACTTC GTAAGCAGCACATTTTTGTCCTAATTTATAGAATTTTGTTTTCAAGCCACAGTGAATGCTTAATCTGTCTTATTTTATCT TTTTTGCAGCTTCCTTGTATCATATGGCTTAAACTCAAAAAACCCAAGAAATTTAGTTTGTCTTGGATTATAAATTGGGT ACGTTCATTGGCATTTGGATAAGGCTCAACTTCAATTTAGTACATTACTAAGATTGTTACTAATTTTATTCCTCATCGTT AAATTTCAGATTTGCATTATTCTTGGTGTATTGTTGATGACATTATCTCCGATCGGTGCAATGAGGAATATTATCCTATC TGCGAAGGACTACAAGTTCTTTTCATAAACTAGCTAGCGAATCAATCCTTATGTTGAATTTAGAGTTGAGGGGGTGTAGT TGAGCACCAAGAAAGCACTATCATGGTTTATAGATAAAATTCATTGGAAATATGAGAGCTATGCATGCACAACATAACAT TGTATAGATTTGTCTAACACTAGTGCAACTTCCTTACAAAAAACTACAATCTCTTCTTATAAAGCGTTGAATTCCAACCC TTGACTTTAAATTTTAAGGATAATTTGAGTATTAATCAAATGAAACTTATTGTATACTTAACGGGTTCCTAAGTTATATG GTAATTGTTGTAAGACTCGTGATTGGTTAAGAGAAATAAGCTCGCTTAATATCTCAGTTTAGTGCTATAACTAGTTGAGT AACCCGTGCAATGCACTGGTGACTTTTATTATTTAAAGTCTGAAATTTGTATCATACTATAT
CDS sequence (LotjaGi6g1v0188300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCACACTGATGAAAAACATAACGTTGTTGATGCCAAACAGAAGGCCATTGATGATTGGCTACCGGTTACGGCTTC CAGGGAAGCCAAATGGTACTACTCAGCTTTCCATAATCTCACGGCCATGGTTGGAGCCGGTGTTCTCAGCCTTCCTTATG CCATGGCACATATGGGTTGGGGTCCCGGCATTACTATCCTTACCTTGTCATGGGTGATCACTTTGTACACACTATGGCAA ATGGTTGAGATGCACGAAATGGTTCCAGGCACGAGATTTGACAGGTACCATGAGTTAGGGCAGTATGCGTTTGGGGAGAA GTTGGGTCTGTATATCGTGGTTCCTCAACAAGTTGTTGTTGAAGTTGGCACGTGCATCGTGTACATGGTCACTGGAGGAA AGTCACTGAAGAAGGTTCATGATTCTCTTTGTCCTGATTGCAAAGACATCAAGACTTCATATTGGATAGTCATCTTTGCC TCAGTGAATCTCGTTCTTGCCCAGTGCCCAAACTTGAACTCCATTTCTGTTGTCTCTCTTGGCGCAGCCGCCATGTCCCT CACGTACTCAACTATCGCTTGGGGTGCTACTATTAAAAAAGGGATTGAACCGAATGTAGACTACAGTATTAAATCGCACA ATACCGCTGATGCCGTATTCAACTTTTTTTCTGCATTGGGAGATATTGCATTTTCCTTTGCAGGTCACAGTGTGGTTCTA GAAATTCAAGCAACAATGCCTACATCGCCAGAGCTTCCTTCCAAGAAACCCATGTGGAGGGGAGTTGTTTTTGCCTACAT CGGAGTTGCCTTCTGCTACCTCCCTGTTGCTGTGATCGGATACTACATGTTTGGAAATGCGGTTGATGATAACATCCTCA TCACACTAGAGCGCCCTGTTTGGCTCATTTCTGCAGCTAACCTTTTTGTCGTTATCCATGTTATTGGAGGTTACCAAATA TTTGCAATGCCAGTGTTTGATATGCTCGAAACCGTCTTGGTTAAGAAAGCAAAGCTTCCACCTTGCCTTGCACTTCGAAT AATAACCCGAAGTGTTTATGTTGGCTTGACAATGATTATTGGCATAAGCGTCCCTTTCTTTGGTTCTCTTCTTGGATTTC TTGGAGGATTTGCCTTTGCCCCTGCATCATACTTCCTTCCTTGTATCATATGGCTTAAACTCAAAAAACCCAAGAAATTT AGTTTGTCTTGGATTATAAATTGGATTTGCATTATTCTTGGTGTATTGTTGATGACATTATCTCCGATCGGTGCAATGAG GAATATTATCCTATCTGCGAAGGACTACAAGTTCTTTTCATAA
Protein sequence (LotjaGi6g1v0188300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHTDEKHNVVDAKQKAIDDWLPVTASREAKWYYSAFHNLTAMVGAGVLSLPYAMAHMGWGPGITILTLSWVITLYTLWQ MVEMHEMVPGTRFDRYHELGQYAFGEKLGLYIVVPQQVVVEVGTCIVYMVTGGKSLKKVHDSLCPDCKDIKTSYWIVIFA SVNLVLAQCPNLNSISVVSLGAAAMSLTYSTIAWGATIKKGIEPNVDYSIKSHNTADAVFNFFSALGDIAFSFAGHSVVL EIQATMPTSPELPSKKPMWRGVVFAYIGVAFCYLPVAVIGYYMFGNAVDDNILITLERPVWLISAANLFVVIHVIGGYQI FAMPVFDMLETVLVKKAKLPPCLALRIITRSVYVGLTMIIGISVPFFGSLLGFLGGFAFAPASYFLPCIIWLKLKKPKKF SLSWIINWICIILGVLLMTLSPIGAMRNIILSAKDYKFFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 7 | 436 | 430 | 1.4E-226 | – | |
| PANTHER | 7 | 436 | 430 | 1.4E-226 | – | |
| Pfam | 30 | 425 | 396 | 4.9E-99 | ||
| Phobius | 32 | 53 | 22 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 54 | 59 | 6 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 60 | 79 | 20 | - | – | |
| Phobius | 80 | 107 | 28 | - | – | |
| Phobius | 108 | 131 | 24 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 132 | 151 | 20 | - | – | |
| TMHMM | 152 | 169 | 18 | - | – | |
| Phobius | 152 | 168 | 17 | - | – | |
| Phobius | 169 | 173 | 5 | - | – | |
| Phobius | 174 | 196 | 23 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 197 | 262 | 66 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| TMHMM | 263 | 285 | 23 | - | – | |
| Phobius | 263 | 284 | 22 | - | – | |
| Phobius | 285 | 303 | 19 | - | – | |
| TMHMM | 300 | 322 | 23 | - | – | |
| Phobius | 304 | 326 | 23 | - | – | |
| Phobius | 327 | 346 | 20 | - | – | |
| TMHMM | 343 | 365 | 23 | - | – | |
| Phobius | 347 | 367 | 21 | - | – | |
| Phobius | 368 | 372 | 5 | - | – | |
| TMHMM | 370 | 392 | 23 | - | – | |
| Phobius | 373 | 392 | 20 | - | – | |
| Phobius | 393 | 403 | 11 | - | – | |
| Phobius | 404 | 430 | 27 | - | – | |
| TMHMM | 404 | 426 | 23 | - | – | |
| Phobius | 431 | 440 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0188300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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