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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0188400 |
| Transcript ID | LotjaGi6g1v0188400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RINT-1/TIP-1 family protein; TAIR: AT1G08400.1 RINT-1 / TIP-1 family; Swiss-Prot: sp|Q8GXP1|MAG2L_ARATH RINT1-like protein MAG2L; TrEMBL-Plants: tr|A0A072V5P0|A0A072V5P0_MEDTR RINT-1/TIP-1 family protein; Found in the gene: LotjaGi6g1v0188400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48347001..48353593) extracted from Lotus japonicus Gifu genome v1.2.
GTCTGAGTTTCCCTTGAATGTTACGACAAAATGCTTGAGATTTAAGAACACGACAGAGACACTTGACTTGAGCGTGCGTG CGAGTGTGTTACATTATTACACTGCATATTTTCCATTGCAGCAGTTACTAAAAACAACAATGGTGTCTCCTTCTTCTTCT TCTTCACATGAACCTGGTTTACCTTCCATCACCGACCTCACACCACAACACAGAGCGTTTCTGGATCAACATTTCAAAAC CAGACAAGACCTCTCTCTCGAATCCACTCACCGTGTTCTCTCTTCTTCCCTCACACAACAATGCTCCCACCTCGAGTCTC ATCTCCTTAACCGCCTCACCAAACGCACCGTTTCGTGGATCTCTCGCTCCTTCAACGCCACCTCCTCCTTCCATCAGCTC ACCCTCTCGCTTCAGAATCTCTCCCTCCGCACTTCCCCTCGTCCGTATCCCCAAAATCGATTTTCCAATTATTTTTCATG TTTTTGTTGATTCCTGATTATTGTTCATTTTTTTTTCAGATGGGGTTGGTTCGAAGAGTTTTAGGTGGGTGTTGAATGAG GAGCTTCCTCGATTAGCTAAGGAAATGAACCGAATTGACTCTCTTCGGAGTTATCTAGGTGAGTACTCAGCTCAGAGAAG AGAATACAAGTGTTTTTTTTTTTTTTATGAAAATTTAAGTTTTCTTTATCTTACTATTATTTTGGATTACAAGAGTGTTT TCATTGGTTTTGTCTTGTTTTGATTTTGTTTCTATTTTTATCTGTGTGAGGTTCAACTTGTGCTATTGTTTTAAAATATT TGAATTTAAAATTTATTTGTTGATTTATAGTTGTTGTAGTTGCCATTGTGAGAATGCTTGTGTGGCATTCACCCTAGAAT TGTAACTATGCAATTGCCACCAGCTGCAAAAATAGTTGGTTGATTGTGTGGCGCTTTACTAGGTTCTCTGTGATCGTGAG AATTAGCATTTGTGTTGTCATTAAACAGCTGTTTGATGAAATAAAGATGTTTGATTTTAATTTTTTTTTTAGCTATAGAT TCTGTTTGTAATGTTGGCAAAATTAGCTGACGCGACATTGATAGAGGGAAACCCATTTTCTGTCTTCTTTAGATTAATTC CTTCTATGTGTTTGATTGGAAATCTTCCATGGTGTTATTGGATATTTGCATCTTCTCCTGCATTATAAGCCGTGTGTGTT GATTGTTGTCTGCTCTATGTTGAAAATGCTGTTTATTTGGTGCTACTTTTTTGATCTGCTAGCTGTAAAGTTTACCTTAC TTATTGTCTCAGAGACTGCTCTGCAGTTGGAAGCTCTGGTTGGAGATCTTGAAGATGCTGCTCTCTTTGTCATGGCTTGC CTCACAGGGAGTAAATTTTCATCAAAGCCCTCAATTTCATCAATCTCTGAAGTACGCCATTTCCATTTTATTCAGTTATT AAATAATGTCTGTTGGAATATTAAAGTAACTACTGATCATGGATTGTGTTCTGCTAATGTGTGATTGTACTGGGCTGCAG GAAAGAAAGCATGACAATTTGCTACAGGCCATAAAAGCCATGAATGGCATTGAAGAAGTATTGATCACGGTGGTGAAACT CCATCCGCGGTGGCATTGTCTTCTGAGGTCTGTTGACGTTAGGGCTGACAAAATCTTGGCTGCTCTCCGGCCACAAGTCT TTGCAGATCACCGTGCTCTTCTAGTCTCTCTTGGCTGGCCGCCTAAACTGCTATCGCTGAAAAATGGGTGTGAGCAAATT GCTGGCCTTCCTAATCCATTAGTCCTAATGCATGAAGATAAAAGAAGAAATTACTCTCGAAGTTTTATAGCTCTCTGTGC TTTGCAGCATCTGCAGAATAGAAGGGAAGAAAGACAGCTTAATAATCTTACAAAAAGAGAGAAGCACAATACACAGCTTT GGGCCATTAGTGAGCTAGTGTCTCCTATGGCATCAAGGATGGAATACCACTTTGCCAAATGGACTGAGCAGCCTGAATAT ATGTTTGCTCTGGCGTATAAAGTTACCAGTGATTTTATTGTTGGAGTAGATGATGTTTTGCAACCTCTTATTGATAAGGC AAGGCTTATCAGTTGTAGTGCAAAGGAGGCCTGGGTCTCTGCAATGGTCCAAATGCTTTCCGGCTTTCTAGAAAAGAAAG TTTTTCCCTTGCTTGCTGAAAGATACCAAGTGAAGCATTTGAAGCCTGATGTGCTGTCTTCATGGCTTCACCTCATAGAC CTTATCATTGCTTTTGATAAAAAGATGCAATCTCTTGTCAATCTAGATACTTGTTTCTTGCCCGAGTCTGAAAGTTTTGA AGGGCCCTCAAGCAGCATGTCAGTTCTATCAATATTTTGTGATAGGCAGGATTGGCTGAAGATCTGGGCGAAAATAGAAT TCAAAAATGCCTGGAAGAAACTTAATACAGAGCTGAAAGAGGAGAGAGCATGGGTGATTTGCAGCAACTCTAAACCTGGA CTTGGCACTGATCAGGAATATGTGTTTCCTAATATAGAAGATCACAAAGCTCCACCTATTGCAAAATCGTTCCTTAAAAT TATCTGGGAAATTATTGAACGCTGCCAAACCATGCCATCCATTTTATTACGAGCACAATTCATTAGATCTGCTGCGGGAA GATTGATATGGTATTTTATGAAGATATTGCTTTTCCGGTTCAAGGGAAATGAATTATGTCCTGATATTTCTGACGGTGTT TCTGTAATTAAAGCATGTGGGTTTATAAATACTGCTAGATATATGTGGGTTAAACTGCAAGAATGGAGTGATGCTGTGGA TTTTTTGGAGATGAAAATTGCAGAAAATGATTCTACCAAACTCATACAAGATGATATAATGGACAGTGGCTGCTTTTTTT ATGAAGAAATAAAAAGCTTGTCTGAAATGGAAACCAACTGGCTTATGGAAATTATGTCCATTGTTCTTCGAGAATTTGAA ACGCTTTCTTGGGACTACATTCAAAACAAAGAAAATTTTGAGGAAGGTCAAGATGATACAAATCTTGTTGCTGTAAGAGA GGACGTTGATTTAGCAGTCTCCAATGATTTTATTGAAGCTTTAGATAATTTAAAAAGTTGGCTTCGTATTGTGAAGATAA ATCTCAATACAAAGGATTTCATAGATTTGTGGAGAAGCATTGCAGAGGGGCTAGATCATTACATTTCATGCAGCATTGTC AAAAATGAGATTCGGTTCACTAAGATGGGCATCAATCAATTTGAAGTAGATATGCATGCTATGATATTTATTTTTCAGCC TTTTTGTGCTCGCCCACAAGCATTTTTCCCTTGTATTAATGAGATTATTAAGCTTTTGAAACTGAAGAAAGAAGAGGTAA AGGTGTTTCTGTCCAATGATGAAAATGGATCAAAATGTTTACATCTTTATGGAATTTCTCATCTGTCAGTTGATCAAGTT CTTCAAGTTCTTACATACAGAAACAGGGCCACTTGATATATACAATAAAGTGGTATATTGGAGAAGTCTACGCATATATG CTGTGTGTAGTTGAATGAGCAAATGGAATGTAATGACCACGACTTTCACTTTTGATGACTGATGCTTAATAGGGGTATGG GAAGAAGTTGAGAATTGTAATGCAGAGGGACAATTTAATTCTGCTGTGAGCTCTCCCTACAAGATGCAAGGTTTTGACAA CATCTGAGAACCCCCCAATATTCATTACAAAAATCATCTTATCTCTGACCCCTCATCAAGCAAACAGTGCTCTGATATCA GTTAATGTGCTGTCCACGATTTCTCATTTTCTTCCAAGCTAAATAAGCCTCTTGACAAAGCACGTGTTTTTGTGGCTGAA GAAAGTGTATGGAACAGCGTGCTGCATTGGAAAAAATGTAAACTAAACCTGCTGAAACTCAACTAGCAGCTGCAAAATCT CAACTCCTAGTTTCTGAATGTCAGTGAACTATATTTGCTTCTTTTCCTTTCCTTTTTCTATTTTGTTTGAACATTTATAA TGATTTCTGACTGTATTTTAGTCTTTAATTTTGTAGATTGCAGACTAAATGGAATTGATTCAGAAGAAATTTCAAATGGC GTCGAATGAAGAATTTCCTGACTGAAAGTGCAGTGTCAATTGAGCCTATTTGAAGACATGTTGGTGAGTTAGGATATTGT CCAGTTTGAGCATTGTTTCAAACAATTAATTGCAGGATTTTTCCCTGCTTTATTTTTAAACAAATACTCTGTACTAGAGC ATATACTCTAACCCCCCTTATTCAAGTATATCACCTAACTCTAAGTTAGGTGATTAGAGTCCGATGTATCAAAAAAAAAT AGTATAAGTTAGGCACTGATTATATATTAGGCTGTAAGTTAACTTCTAACTACTTCTTAATCAGCCCCTTCATTGCTTTC TTGATTGATTACAATCAAACTTTAAATTCAAGTGTGAAGTCTAGGCACACAATTTCCCGAAGCATTCTTTTCTAACAACT GTTCTCTATGGATATTGAGCACTTTGCCAAGAAAGGATTCATGATACTTACTGTATGCAACTGTAATCACAATGTAATCA CCCTACAAAACTAAATCACAAAATAATTGGTTCAGGCAATCTGATATGTTCACAAATACCATTAGATAATTTCATAAACG TTAGAAATCTTTATTATTGAGCTGCATATATCTTTCTTGTACGATGCCATGTTTCTCAGCATAAATATAGTGTCAGTGAA ACTGACAAGATTGTCATTCTCATTACTAATCCTTTTCATAATTATCAGTGAAAATAGAAAATTATAATAAGAATATTTTG TGAAATGAAGTTCTTTTCTTCTTAATAGTGACTTATACATCTTAGAAGAGTTGTTCCCATGCCAACTGAAGTTAAAAATG AGGATTCTTCCAAGCATATGAACTTCCTATACTCGGATTTAACACGTTATAAGAAACTCTGGAGGAATTTTTTTCTCTTA AAACTGTATTTTATTCTCCTTATTTCTTTGTTTATCCGAATCCTGCAAATAATCTGCATTTGTTTTTTTTTCATTTAAGT TACTCTAGTCGTCTTAAATGCTTTTTGATAAACTCTTGGGTGGTTTAATTGTTTTGTTTCTTCCTTGAGTTGGTTTATTG AAGTGTAAATTTTTTTTCACTATCTTTACCCATATGTTGTTTTCATAGTTAAACTTCTTTTGTTGAGGTGCAGTTTGTCA ATTCATGATTCATTTTAGTGCAAAAGAAACCCATGTTTGTCAGAAAAAGTAAAGTAAAATAAAGTTGTGTTTAAATTTTT CTATGATGTACTAGGGTACTACAATCTGCTTGTCACACTCACTTAGTGCCGGAAGACAGTACTAATTAACAAGATATTAT AAGATATAGGAAGAAATGGAATTTTGCGCTTTATAACCTTGCTTTCTAAGTGACAGGAGTAACATAAAAGACATCAAAGG CACTTTATCAAAATATAGAAATGTTAACGATCACTCTCAATATTCTTTTCACTCAAGTTGTCAATTTCTTCGATGCCTTG GGTTGAATAAAAACTATGCAAGAAAGAGATTGATTAAAGATTATCATCTCCAATTATTGTCTCTTCCATCTCATGAGAAG TGAGATTTTCTAGAATGTAGAACAAGCAAACAGATTGGTCGTGTAGCAAATAAATACTATGATTTAATAGTTGAATGAAA GAATGAAAATTTTATGTTTGAATAAATAGACACAACTCTTGGAATGATCTATTCATTATGGTTGGTGAATAAAGTTCTAT CCACACTCTAGTCACCTACACCTTATGAAGATGGGAAGAGAAAAAAATGATAGATATGATGAGTGGTGTGATAGAAAAGA AAAGAGGGATAGAAAGATGAAATGAATGAAAATGAGATAGATGAGAAAATGAGGTGTGAATGAACCATAATCATGTATCT TATGAGAATGACCTTTTAGTGTGAGAAATGAGAGAATAAATTGTGATCGTTAGACCTAATCATGAACGGTAAGATTAAAA GTTATTTTTTTGTCACAATATATTCTAATTATTCTCACATAAGAAAGTCATTTTCATACGTCCCCTATTGATTTCCATAG TTAAGATAGAGCATAAAAAAAGGAAGAGATAGAGAAAGAAGTTTGCATTGTTGATAGTATTCAAAAGAATTAATCTTTAT AGTAAAGAAGTCTATTCATAATGCTTGATTGATTTCCATATATTGTACATTCGCAACAATCATCGACTCAAGGCCTTCGA ATTCATAAAGCTAGGTATTAGCATCTTGGGATGTTTGGGTTAACTTCAACAATTTATTCCAAGAGATTCCCATATCTTGG ATAACATAATTTGGTAAGCCTGAGGATCAAGCTTTTCAAATATTACTTTTTAATTTGTAGCGTGATCAATAAGTTCAATG AAATGTCTTAACTCTTAATAGAAGAGTTGAGAATTGAGATATATCTAAATCAGCAGTCCAAAGTGATAGTGAAAGTGATA TTTTTAGATTCCAAATTGATTTTTAAGTGCTCACTTATTTACTATCTCTTTCACTTTCACTTCAACTAGAAATTATATAT ATATCATGCTAAATTAATAATTTATCATCTCAG
CDS sequence (LotjaGi6g1v0188400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTCCTTCTTCTTCTTCTTCACATGAACCTGGTTTACCTTCCATCACCGACCTCACACCACAACACAGAGCGTT TCTGGATCAACATTTCAAAACCAGACAAGACCTCTCTCTCGAATCCACTCACCGTGTTCTCTCTTCTTCCCTCACACAAC AATGCTCCCACCTCGAGTCTCATCTCCTTAACCGCCTCACCAAACGCACCGTTTCGTGGATCTCTCGCTCCTTCAACGCC ACCTCCTCCTTCCATCAGCTCACCCTCTCGCTTCAGAATCTCTCCCTCCGCACTTCCCCTCATGGGGTTGGTTCGAAGAG TTTTAGGTGGGTGTTGAATGAGGAGCTTCCTCGATTAGCTAAGGAAATGAACCGAATTGACTCTCTTCGGAGTTATCTAG AGACTGCTCTGCAGTTGGAAGCTCTGGTTGGAGATCTTGAAGATGCTGCTCTCTTTGTCATGGCTTGCCTCACAGGGAGT AAATTTTCATCAAAGCCCTCAATTTCATCAATCTCTGAAGAAAGAAAGCATGACAATTTGCTACAGGCCATAAAAGCCAT GAATGGCATTGAAGAAGTATTGATCACGGTGGTGAAACTCCATCCGCGGTGGCATTGTCTTCTGAGGTCTGTTGACGTTA GGGCTGACAAAATCTTGGCTGCTCTCCGGCCACAAGTCTTTGCAGATCACCGTGCTCTTCTAGTCTCTCTTGGCTGGCCG CCTAAACTGCTATCGCTGAAAAATGGGTGTGAGCAAATTGCTGGCCTTCCTAATCCATTAGTCCTAATGCATGAAGATAA AAGAAGAAATTACTCTCGAAGTTTTATAGCTCTCTGTGCTTTGCAGCATCTGCAGAATAGAAGGGAAGAAAGACAGCTTA ATAATCTTACAAAAAGAGAGAAGCACAATACACAGCTTTGGGCCATTAGTGAGCTAGTGTCTCCTATGGCATCAAGGATG GAATACCACTTTGCCAAATGGACTGAGCAGCCTGAATATATGTTTGCTCTGGCGTATAAAGTTACCAGTGATTTTATTGT TGGAGTAGATGATGTTTTGCAACCTCTTATTGATAAGGCAAGGCTTATCAGTTGTAGTGCAAAGGAGGCCTGGGTCTCTG CAATGGTCCAAATGCTTTCCGGCTTTCTAGAAAAGAAAGTTTTTCCCTTGCTTGCTGAAAGATACCAAGTGAAGCATTTG AAGCCTGATGTGCTGTCTTCATGGCTTCACCTCATAGACCTTATCATTGCTTTTGATAAAAAGATGCAATCTCTTGTCAA TCTAGATACTTGTTTCTTGCCCGAGTCTGAAAGTTTTGAAGGGCCCTCAAGCAGCATGTCAGTTCTATCAATATTTTGTG ATAGGCAGGATTGGCTGAAGATCTGGGCGAAAATAGAATTCAAAAATGCCTGGAAGAAACTTAATACAGAGCTGAAAGAG GAGAGAGCATGGGTGATTTGCAGCAACTCTAAACCTGGACTTGGCACTGATCAGGAATATGTGTTTCCTAATATAGAAGA TCACAAAGCTCCACCTATTGCAAAATCGTTCCTTAAAATTATCTGGGAAATTATTGAACGCTGCCAAACCATGCCATCCA TTTTATTACGAGCACAATTCATTAGATCTGCTGCGGGAAGATTGATATGGTATTTTATGAAGATATTGCTTTTCCGGTTC AAGGGAAATGAATTATGTCCTGATATTTCTGACGGTGTTTCTGTAATTAAAGCATGTGGGTTTATAAATACTGCTAGATA TATGTGGGTTAAACTGCAAGAATGGAGTGATGCTGTGGATTTTTTGGAGATGAAAATTGCAGAAAATGATTCTACCAAAC TCATACAAGATGATATAATGGACAGTGGCTGCTTTTTTTATGAAGAAATAAAAAGCTTGTCTGAAATGGAAACCAACTGG CTTATGGAAATTATGTCCATTGTTCTTCGAGAATTTGAAACGCTTTCTTGGGACTACATTCAAAACAAAGAAAATTTTGA GGAAGGTCAAGATGATACAAATCTTGTTGCTGTAAGAGAGGACGTTGATTTAGCAGTCTCCAATGATTTTATTGAAGCTT TAGATAATTTAAAAAGTTGGCTTCGTATTGTGAAGATAAATCTCAATACAAAGGATTTCATAGATTTGTGGAGAAGCATT GCAGAGGGGCTAGATCATTACATTTCATGCAGCATTGTCAAAAATGAGATTCGGTTCACTAAGATGGGCATCAATCAATT TGAAGTAGATATGCATGCTATGATATTTATTTTTCAGCCTTTTTGTGCTCGCCCACAAGCATTTTTCCCTTGTATTAATG AGATTATTAAGCTTTTGAAACTGAAGAAAGAAGAGGTAAAGGTGTTTCTGTCCAATGATGAAAATGGATCAAAATGTTTA CATCTTTATGGAATTTCTCATCTGTCAGTTGATCAAGTTCTTCAAGTTCTTACATACAGAAACAGGGCCACTTGA
Protein sequence (LotjaGi6g1v0188400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSPSSSSSHEPGLPSITDLTPQHRAFLDQHFKTRQDLSLESTHRVLSSSLTQQCSHLESHLLNRLTKRTVSWISRSFNA TSSFHQLTLSLQNLSLRTSPHGVGSKSFRWVLNEELPRLAKEMNRIDSLRSYLETALQLEALVGDLEDAALFVMACLTGS KFSSKPSISSISEERKHDNLLQAIKAMNGIEEVLITVVKLHPRWHCLLRSVDVRADKILAALRPQVFADHRALLVSLGWP PKLLSLKNGCEQIAGLPNPLVLMHEDKRRNYSRSFIALCALQHLQNRREERQLNNLTKREKHNTQLWAISELVSPMASRM EYHFAKWTEQPEYMFALAYKVTSDFIVGVDDVLQPLIDKARLISCSAKEAWVSAMVQMLSGFLEKKVFPLLAERYQVKHL KPDVLSSWLHLIDLIIAFDKKMQSLVNLDTCFLPESESFEGPSSSMSVLSIFCDRQDWLKIWAKIEFKNAWKKLNTELKE ERAWVICSNSKPGLGTDQEYVFPNIEDHKAPPIAKSFLKIIWEIIERCQTMPSILLRAQFIRSAAGRLIWYFMKILLFRF KGNELCPDISDGVSVIKACGFINTARYMWVKLQEWSDAVDFLEMKIAENDSTKLIQDDIMDSGCFFYEEIKSLSEMETNW LMEIMSIVLREFETLSWDYIQNKENFEEGQDDTNLVAVREDVDLAVSNDFIEALDNLKSWLRIVKINLNTKDFIDLWRSI AEGLDHYISCSIVKNEIRFTKMGINQFEVDMHAMIFIFQPFCARPQAFFPCINEIIKLLKLKKEEVKVFLSNDENGSKCL HLYGISHLSVDQVLQVLTYRNRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 821 | 813 | 6.6E-216 | ||
| ProSiteProfiles | 218 | 824 | 607 | 109.519 | ||
| Pfam | 307 | 818 | 512 | 3.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of LotjaGi6g1v0188400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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