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LotjaGi6g1v0188800.6

Overview

Field Value
Gene ID LotjaGi6g1v0188800
Transcript ID LotjaGi6g1v0188800.6
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT5G10270.1 cyclin-dependent kinase C;1; Swiss-Prot: sp|Q6I5Y0|CDKC1_ORYSJ Cyclin-dependent kinase C-1; TrEMBL-Plants: tr|A0A151S8Z2|A0A151S8Z2_CAJCA Cyclin-dependent kinase C-2; Found in the gene: LotjaGi6g1v0188800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48402966..48406292) extracted from Lotus japonicus Gifu genome v1.2.

ACGGGAACTCTTGGTCAAATCAATGCGATTGAATCTCCTTTGGTGGGATCCAGAAGCGTTGATTGTTTCGAGAAGTTGGA ACAAATTGGCGAGGGCACATATGGGTCAGTGTTCTTTTTCATCATGTTCTTGTTTTGTCCCCTTTTTCTGAATTTTTGTT GTAGTGTGATTCATAGTTTCTCCAAATTTGTAATTTTTTTGGTTTAGTTTTTGTGTTTTAGCTGTGTAGGTGTGATGTCT TGTGATTTAAGGTTATGGGCAGCAGCTACTTATGTTTGATCATGTTATCATAGTTTTATTAGTTGTTTCTGATGGTGGAA TTGACTTGGAAATTTTTTTGTGTATAATGTAGTATGTACATTGTAAGAGAAGATTATGTATTCAATGTGATGCTGGTTCT ATAGTTTTGGGGATGGGGGGTTGCTTCATGTGTACTAGGGATGCTGCTTTAGCTTTTATATGCCGGGAAGGTAGCGGCAT TGGCAGGAGCTTCATTGATGTTTTAGGGTTTATGATTATAATGTCCTCCCTTTAATTTCAACCAGAAGGGAGGGAGTTCG AGCTTTTGCTTTTTAGCTATGGAGAAGCAGCATAAGAGCATGAGAATGATGAGATAACTAGCTAGTGAATGTGACTTCTC GAAGCGTGATGTGCTTCCTTTGATTGATAGAGTTGATTGAGATTGAAAGAAACCAGCCCTATCTGCCAACATACTGTTTT TGAGAAGGGTAGAATCTTATTAGGAGCATAAGTAAAACTATGTTAATCGAGTTCTTGTCATTTTGTGCCATCTTAAGGTT AAGGGTTATCTCTGGTTTCTAATACTCGTAGTTTTCTACATTTCAAATTGAATCAAATGTGGCATTTTCATGTACTTTTT TCTGAAATGTTTTGTATGTATACCCTTTATATCGTGTTTGTGCTTTGCTTGTGGAGTTTCTGGCAGCATTCATGCACTGA TAAGGGAAGAGAGACCGAGAGAATAGTACTTCTAGCTTTTAAAATGTCTTACCTGTTTGCATTGTAGAAAAACATTTATT TGTGCTAGATTCATATATACTGTTCACAATCAATTCAAATACTTATTAAACATGTTTATTCTGTGTTCACCTTTTAAAAC TACTTGAATATTCTTTGATAGTATATTTTTGATAAACTACATAAAATGCTCTGGACACAGTTCCCATTCCCAAATATATT TTTTTCTTAAAATGCTAGAAAATTTTAGCCTTCTTACTCGCACTTTTATTTTTTCTTTTTGATATTTGTTCCTCCTGCTT CTATGACATTGGGCATCCCTGAAATGCTTTAAAAATTTTCCTTGGTATAGGAATTGTTTTGTTCTTTTATGTTCCAGTAA TTATTTCTACCTTTGCACTTTATTTTTACCTTTTTGATATTTGTTCCTCCTGCTTCTACATTGGACATCCCTGAAAGGCT TTAAAATTTTACCTTGGTATAGGAATTGTTTTGTTCTTTTATGTTCCAGTAATTATTTCTACCTCTTTGCTGATATGTTC TAAAGGAAAATAATCTGTGCTTTACCATGCTTATCCTTGCAGTCAAGTTTACATGGCTAAAGAGCATAAGACGGGTGAAA TTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGGTATAATTGTATCTCGTTGCTCAATGTTGCATTGTT TATTATATTTATGATGCATTATTGCCATTAGTTTGGTGCTTCATTTGTGATATCTTGGGATGTCTCTTGCTTGCTCCCTT TTCAAACATTTGATGGTTTGTACAATTCAGTATACCAAAATCTGAAGTTTCAGTATCGAACTGTTGGTTTTCTGTAATAT GGGTTTCTTCTCTGAATCAAGCTTGAATCATATCATTGCAGTTTCCCATAACTGCTATACGTGAAATCAAAATTCTAAAG AAACTCCACCATGAAAATGTAATCAAGTTGAAAGAAATAGTGACTTCTCCAGGTACATTTTTCGATGATCTCAGATCAGA ACATCTTTTCTTTTTATTTATCAAAATGATGTGAGCTTTAAAAATACTGTTTCATTGTCTTCTAACATTTTGGGTTTCTT TTTACAGGACCCGAGAAAGATGAACAAGGGAGGCCAGGCAAGTCATTCATTTTCATGATATCAGTGGATTACCTATTTTT GAAAATTACACAGTAGCATGTAGTATGCTTTTTGTTATGACTATCTGAATATACCCATCACATTCTGTTTGTTTCTCTTA TATCCATAATTTCCTGCTTCATCGTTTTTTTTGGTATTGCGCAGATGGTAATAAATACAAAGGTGGCATTTACATGGTCT TTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACTGTCCCTCAAATTAAGGTATTA TTTTTTAAATATTGTTTTAATTCATATGCTGATAGTTATTGTTATAGACTTATAGTGATATCTTGGTTGATTTCCTTTCT GAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCATTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGTT CTAATTTCTTCCAAAGTGTTACTTGTCCAAGATGTCAGTATGAGATCCTGTCATATGGATTATTACTCCAATTTGATTTA TATTGTTCCTCTGCAGGCTCAAATCTTCTTATAGATAATGAAGGCAATTTGAAGCTTGCAGATTTTGGATTGGCTCGATC ATTTTCTAATGAGCACAATGCAAATCTTACAAACCGTGTCATCACGTTATGGTACAGGTAATTGATGTTCCTGTGATAAT GACACTAAAATTGGTGTTTAATTTTGGCCTGTCTAAGTTCAATTCTGTGGTGCATTGTTATGAAATGATTCTATATAATA TACACCCATTGATTTATTTCATTCCATATTTAGACCCCCTGAGTTGCTGCTCGGGGCAACAAGGTATGGGCCAGCTGTAG ATATGTGGTCTGTTGGGTGCATTTTTGCCGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGGTTAGTGTT GCTTTATATATAATTGAGTGAGATTAGGGGCAAAGTGTTTGAGTGGTGGTTGTGAAATTATTTATTTTCCAGGTTGGGTT TTATCCAGTATATTGTCTGAACTCAATATAGATGCATTAAGGACTGGAAGAAGAGATTCTTCATATCATGCACATAGCCT TAAAGTATTTATCAAAATGGCTTTAGAGTTTTGGATCCAACCTAATAATTGTTTATGTTTGGAAATATTGATTTTGTTAG GAGGGTCAAACTATGTAGTATGTACATGTATTAAACCTGGGCTTGAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0188800.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAAAGAGCATAAGACGGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCCAT AACTGCTATACGTGAAATCAAAATTCTAAAGAAACTCCACCATGAAAATGTAATCAAGTTGAAAGAAATAGTGACTTCTC CAGGACCCGAGAAAGATGAACAAGGGAGGCCAGGCAAGTCATTCATTTTCATGATATATGGTAATAAATACAAAGGTGGC ATTTACATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACTGTCCCTCA AATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCATTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAG GCTCAAATCTTCTTATAGATAATGAAGGCAATTTGAAGCTTGCAGATTTTGGATTGGCTCGATCATTTTCTAATGAGCAC AATGCAAATCTTACAAACCGTGTCATCACGTTATGGTACAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0188800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKEHKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPGKSFIFMIYGNKYKGG IYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEH NANLTNRVITLWYR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.200.20
1 89 89 2.8E-25 –
PANTHER
PTHR24056
1 174 174 1.7E-103 –
PANTHER
PTHR24056:SF409
1 174 174 1.7E-103 –
SMART
SM00220
1 174 174 5.4E-10
IPR000719
ProSiteProfiles
PS50011
1 174 174 27.029
IPR000719
Pfam
PF00069
2 174 173 1.0E-40
IPR000719
SUPERFAMILY
SSF56112
2 174 173 1.62E-48
IPR011009
Gene3D
G3DSA:1.10.510.10
90 174 85 6.0E-26 –
ProSitePatterns
PS00108
127 139 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0188800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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