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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0191700 |
| Transcript ID | LotjaGi6g1v0191700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|V7B6M9|V7B6M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0191700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48814444..48815836) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGACGCGTTTACAAGTGGATTTTACGCGCACACGTTTTTCCTTCCTTTCACTACTTAACACCCCACACCTGATCTCA ATCTCAACAACACTCATCACTCACACAAACCTTGCTCTTCTTTCTAACTCGCCGCAACTCGCTCCTCACTCACTGAGTCA CCGACTCACCACAATGGCTGACCGAGTTCACCCCCACACCTCACCCCCTGCTTCCGCCGAGTCACAACCCGCTCCACCTC CCTCGGAGAAACCAGCCTCGCCTACCGGAACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCGTCCCTCCGCCG GAGAATGCGCGCCGCTACGCCAACTACAACCGCCGCAAAACTCGCCGATGCGGCTTCTGCTGCTGCCTCTGCTGGCTCAT CGGCCTCCTCTTCATCTTCCTCATCCTCCTCGGCATCGCCGCCGGCGTCTTCTACCTCGTTTTCCGTCCCAAAGCGCCTA ACTACTCAATCCAAACCGTCTCCGTCAAAGGAATGAACCTCACCTCGCCATCGCCGTCATCCGCGGCGGCAATCTCGCCG GAGTTCGACGTCGCGGTGAGAGCCAACAACGGCAACGACAAGATCGGGATCTACTATTTGAAAGGAAGCTCGGTGGAAAT GTTCTATAGAGACTCGCGGCTCTGCGGCGGCGCGTTGCCGGCGTTTTACCAGGCGTCGAACAATGTGACGGTGTTTAAGG CGGTGTTGAAGGGCGACGGCGTCGAACTCGCCGGGTCGGATCGGACGGCGTTGGTGAACGCGGTGGCGAAACGGAGCGTG CCGTTGACGATGAAGCTGAGAGCGCCGGTGAAGATTAAAGTGGGGTCCGTTAAGACGTGGAAGATTACCGTTAAGGTGGA TTGTGACGTGGCGGTGGATCAGTTAACGGCGAAGTCGAAGATTGTTCATAAGGATTGTAGTTATGGATTGGATCTTTGGT GATGAAAATTGAAACTGTTTAGATTAATTAATTAATACATTCTTTATAAATTTTTTGTATTATTAGCATAGATATTATGT AGATTTTCATGTATACATTGATAATACATTGCTGTTAATTTTACATTCTTTATGCTTGTTTTTGTAATTTTGTCATTATT AATTAATTTTATAAGTATATCAATTTTAGATAAAATGGATCAATAATAAACAATGTTTCAAATAATAAGTGTTTATGACT TTCAAAAAAAAAAAAAAAGAATAATAAGTGTTTATGCAGTGCACATAAATTAAAGTAAAAAATAATATTTTAGCTAAGGT ATGTTGTTAAGTGTATCATTTGATTTGATTGTGGTACATAATCCACCAAGTTAAGGAAATTTTTGTCTCCCACTTGTGGT TAAACTGATATTTAATTAAAATCTGGCTTTTGC
CDS sequence (LotjaGi6g1v0191700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACCGAGTTCACCCCCACACCTCACCCCCTGCTTCCGCCGAGTCACAACCCGCTCCACCTCCCTCGGAGAAACC AGCCTCGCCTACCGGAACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCGTCCCTCCGCCGGAGAATGCGCGCC GCTACGCCAACTACAACCGCCGCAAAACTCGCCGATGCGGCTTCTGCTGCTGCCTCTGCTGGCTCATCGGCCTCCTCTTC ATCTTCCTCATCCTCCTCGGCATCGCCGCCGGCGTCTTCTACCTCGTTTTCCGTCCCAAAGCGCCTAACTACTCAATCCA AACCGTCTCCGTCAAAGGAATGAACCTCACCTCGCCATCGCCGTCATCCGCGGCGGCAATCTCGCCGGAGTTCGACGTCG CGGTGAGAGCCAACAACGGCAACGACAAGATCGGGATCTACTATTTGAAAGGAAGCTCGGTGGAAATGTTCTATAGAGAC TCGCGGCTCTGCGGCGGCGCGTTGCCGGCGTTTTACCAGGCGTCGAACAATGTGACGGTGTTTAAGGCGGTGTTGAAGGG CGACGGCGTCGAACTCGCCGGGTCGGATCGGACGGCGTTGGTGAACGCGGTGGCGAAACGGAGCGTGCCGTTGACGATGA AGCTGAGAGCGCCGGTGAAGATTAAAGTGGGGTCCGTTAAGACGTGGAAGATTACCGTTAAGGTGGATTGTGACGTGGCG GTGGATCAGTTAACGGCGAAGTCGAAGATTGTTCATAAGGATTGTAGTTATGGATTGGATCTTTGGTGA
Protein sequence (LotjaGi6g1v0191700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADRVHPHTSPPASAESQPAPPPSEKPASPTGTYVIQIPKDQVYRVPPPENARRYANYNRRKTRRCGFCCCLCWLIGLLF IFLILLGIAAGVFYLVFRPKAPNYSIQTVSVKGMNLTSPSPSSAAAISPEFDVAVRANNGNDKIGIYYLKGSSVEMFYRD SRLCGGALPAFYQASNNVTVFKAVLKGDGVELAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVGSVKTWKITVKVDCDVA VDQLTAKSKIVHKDCSYGLDLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 14 | 28 | 15 | - | – | |
| PANTHER | 33 | 258 | 226 | 7.5E-80 | – | |
| PANTHER | 33 | 258 | 226 | 7.5E-80 | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 68 | 97 | 30 | - | – | |
| Phobius | 98 | 262 | 165 | - | – | |
| Pfam | 135 | 237 | 103 | 4.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0191700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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