Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0192600 |
| Transcript ID | LotjaGi6g1v0192600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT3G43720.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9LZH5|LTPG2_ARATH Non-specific lipid transfer protein GPI-anchored 2; TrEMBL-Plants: tr|I3SPE8|I3SPE8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0192600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48882447..48886199) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAACACATTGAACAAAAATAGTACTAGAAATTACTCTTCAAGCCACTCACCCACCCAAGTTTGGGATCAAATAGTGA AGGACTTTAATTTCCAGAGGTAGAAGTTGCAACCCCAAGAGAGAGAAAGAGAAATTGCACATTGAGTTAGTTAGATGTTA AAGTTCATTAAATTCAGCCACCAAAAGTTAGAAAACCACTCTTTCTATATCAACACCTACTATTTAATTTCAACTTACCT ATTTGTTCACACTTTACCTTGAAATTTGAATCCTTGATCTGCAGCATATAAATCACATAGCTAAGAGTATCAAAACAGAT CAAAACAACCAAATGGCCACCATCACCACCACCACCACCAGAGTGGTTGCATTTGCTGCATTAGTCCTTGCACTGGCATG TCATGGCATGAGTGCTCAATCTCTGGCACCGGAATCCGCTTCAGCACCGTCTCCGGCAGGCGTTGACTGCTTCACAGCAC TGACAAATGTGTCAGATTGCTTGACATTTGTGGAAGCTGGGAGCAATCTGACAAAACCAGACAAAGGGTGCTGCCCTGAG TTTGCAGGGTTGATAGAAAGCAATCCTATCTGCTTGTGTCAGCTGCTGGGAAAGCCTGATTTTGTTGGCATCAAGATTAA TCTGAACAAAGCTATCAAGCTTCCTTCAGTTTGTGGTGTGGATACACCCCCTGTTAGCACCTGCTCTGGTAAATCTCTAC AACACCTTAAACCCCTTTTGTTCTAATTTCAGAACACATCATATATATTTTGTTTTCTTGTTTTTTCTCATTATAATTTA TCTTCCAAATGATAGTTATATTAGTGTAGTTTTATGTTGGAAACTTGTTATAACTTTGTTTGAACTTGTAGATCATGGAA AGGCATGAATCTTATGCCAGTATAAGTACCACACTACTAATAACTAGTTGTTTCAGCATTCAGGTGAAGAGGGATTTAGC TATATGCCTATATTAGCCAGTAAAGGGCACCATCATGAATCACTAAATATTAAGAATCAAATCTAGTTTTAATTAAAGAA TGGTGATGTTGACAATTACAAAATAATCATGTATGAATTGCAAGTTGACAATTATAAAATAGTTTCTTAAGGTCTAATAG GTACAGAGCTTTAAAGATTATGATTTGTTAATCTCTAAAATAAAAAATTACTACAATTCTTTAATTTAGTCTTTTCTATA ACGTTTAATAATTATTACACCTAAACTTACTACGTTGGTTGTGTTGGTTAAATTGGCTGTTTGAATCTTTAGGTTGAAAG TTCGATTATTCAAAATCACAATAACCAAACGCATAAACTTAGTGTAAACAATAATTGTTAAATTACACAAGACTTATTTA TGCTTGATTAATATTCAATTTACCTTTTTGCTTCTTCAACATTTATTTCTAGACAAATGTTTTAAATTTCCACCTCCGAG GTAGCTTGTTTTGCGGTATACTGCACATGCTCATTTACACAAAGAACTACCCTATCCACCGCCAATAATAAACAAACCAG AGCAACAAATTGGTGTTGGTAGGACCCTGAATAACCATGACAACAACTCCAATTCATTCCCTTCAATTTTATTCATACTA CCCTCTTTTATTTCCTGCTAAGTTAGTGCATCAAATGTGTGTAATTTCTACTTAATCGTTAGTATAGTGTTGATTACTTT TTTGGTAGATTAATGTTGTACTAAGATGGTAAAAAATCTGAAAGAAATTTTAATAAATATGCATTAAAAATCCAAAGGCC AATTATTAGATATGTTCTGTCCATGATTTTTTTGTGACAATTCTATCCATGATTAGTGTAATGTTAAGCCAAGAAAATTA TTGCCATATGTGTATTGAAGATTGTCTCAACTTTGTTTTGTTTTTCATTGTGTCACAGTTATTGGAGTCCCTGTGTCCTT GCCTCCATCAAGTGAAGGTATGTCACCAAGTAAACTTTGCATCAGTTTTATTTTTCAGTAACTCCTTTTTTGGCATTCCT TTATTTATTCTGAATGCAAAAGAGTTTCCACTTCCCAGATTGAAACTGCTGTTGTCTTAATTTTGTTGTTTTGTAAAATA ATGAAGGTTTGGCACCAGGAGGATCAGCAACCAGTCCTTCAAATGCACCTTCTTCCGGTATGTCATTGGAATTCTATACA TATTATTATGCCTAGTCATATGCTTATATTATAGTTCTAACTAATCTTAAGTACTTGATTTTTTTTAAAAACAAAATTAT GCAGGTGGTCCAAGCCCTTCTTCTGATGAAGCTGCTGTCGGTACTTCTGGAAACAAAAATGGAGCTTCAGGCATTCAAGC ATTTTCCCTGCCGACTTTCATTTTCGCCCTTTCCACTCTTTTTGTCTCCACATTCTTCTGATTTTATACACATCTCTCCA TGTCATTAATTAATTTCATAAATCTTTCATTTATCTGCATGTTGAAAGCTGCTTTGACTGTGAAGCCTTTGTTGTAATTT GATGCAATCTTCCATTTGTTAGTACCATCATTATTATTATTATTGAATCACACACTTCAATTAGGACCTTCCTTGCCTGC ATTGAAAGCTCTACATTTTTTGCTTTAATTGAACTCTGTTAAGTCCCACATTGTCACGAGTAGTGATACGGCTAATGAGG TACTTATAAATGACAGGGTAAACCTGACATTTGAGCAAACAAAATAGTATTGTATTCTGTTAATTTTATTTACAGCATTC TTGTCTAATGAGAATGTAACATTGTTACTGAAGTACTTAATTATACTAAAAAGGAAAAATGTCACACATAAGGAGGACAG TAGCAATCCAAAGAAATATAAAACATTTACATAAAAACCCACATTTTAGATTTAGATACAGTGGAGAATGATTGGAGCTC CATGTTGTGGCTTAAGAGTAACACGATTTCGAGGAGCATGAGCATAAGAAGGTGAAAGCTGAAATGAGAAATGTTGGAGA ATCATAGCAAGCACCATCTTTGTTTCTATGATGGCTAAATTTTGGCCAAGGCAGATTCTGGGACCCCAGCCAAATGGATA GAAAGCAACTTGATCATGGGAAGCTTTGGAAACCCCTTTAGAGAACCTCTCTGGATCAAACTCTTCTGGGTTGTCCCAAT ACCTTGTATCATAATGAAGAAGCATAAATGGTATATAGAGCTCAACACCAGCTGGGATGGATAAGCCTCCTACCTTGGTT TCACACTGTGTGTACCTCTGCATATATGTCAAAGGTGGGTACAATCTTAGGACTTCATGAATCACCATTGACACCTACAA TTAAAATCAACCATTCATGTTAATTTACAACTTAGAGCCTGTTTGGATGTAGAGCCAAAAACACTTATTGGAGTTTATTC AGTACTTTTCATAAGCTCCAATAAGTGTTGTATAGTCAGTATCCAAACGGATCTTAATATCACTCTTTTTTCAAGTTAAA ATAAATAGGCCCTTGTGCTCTATGATTTTCTACTTACGATTTTAAGGCGATTTATGACTTCAAGATCAGGAGTTCTTTTA CCACAAATCTCAAATACTTCTGCTCTGGCCTTGTCCTGCCAATTTGGATGCATAGATAAAACAATCATGGTCCATGTAAG CAGGTTGGTTGTGGTCTCTTGGCCAGCAAAGTAGAATAACTTGCATTCCTCAATCACTTCATTAATTGTTAGAGAATCTA TGTTTTCTTCTTCTTTGCACTTCAATAGCAGGCTTAATAGATCATGTGTTTCCAACACTCCTGTTCTCATTGC
CDS sequence (LotjaGi6g1v0192600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCATCACCACCACCACCACCAGAGTGGTTGCATTTGCTGCATTAGTCCTTGCACTGGCATGTCATGGCATGAG TGCTCAATCTCTGGCACCGGAATCCGCTTCAGCACCGTCTCCGGCAGGCGTTGACTGCTTCACAGCACTGACAAATGTGT CAGATTGCTTGACATTTGTGGAAGCTGGGAGCAATCTGACAAAACCAGACAAAGGGTGCTGCCCTGAGTTTGCAGGGTTG ATAGAAAGCAATCCTATCTGCTTGTGTCAGCTGCTGGGAAAGCCTGATTTTGTTGGCATCAAGATTAATCTGAACAAAGC TATCAAGCTTCCTTCAGTTTGTGGTGTGGATACACCCCCTGTTAGCACCTGCTCTGTTATTGGAGTCCCTGTGTCCTTGC CTCCATCAAGTGAAGGTTTGGCACCAGGAGGATCAGCAACCAGTCCTTCAAATGCACCTTCTTCCGGTGGTCCAAGCCCT TCTTCTGATGAAGCTGCTGTCGGTACTTCTGGAAACAAAAATGGAGCTTCAGGCATTCAAGCATTTTCCCTGCCGACTTT CATTTTCGCCCTTTCCACTCTTTTTGTCTCCACATTCTTCTGA
Protein sequence (LotjaGi6g1v0192600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATITTTTTRVVAFAALVLALACHGMSAQSLAPESASAPSPAGVDCFTALTNVSDCLTFVEAGSNLTKPDKGCCPEFAGL IESNPICLCQLLGKPDFVGIKINLNKAIKLPSVCGVDTPPVSTCSVIGVPVSLPPSSEGLAPGGSATSPSNAPSSGGPSP SSDEAAVGTSGNKNGASGIQAFSLPTFIFALSTLFVSTFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 38 | 38 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 11 | 23 | 13 | - | – | |
| PANTHER | 11 | 198 | 188 | 2.0E-52 | ||
| PANTHER | 11 | 198 | 188 | 2.0E-52 | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 200 | 172 | - | – | |
| Pfam | 35 | 124 | 90 | 4.4E-14 | ||
| Gene3D | 44 | 122 | 79 | 1.9E-16 | – | |
| SUPERFAMILY | 44 | 125 | 82 | 6.15E-16 | ||
| SMART | 46 | 124 | 79 | 3.6E-4 | ||
| CDD | 53 | 116 | 64 | 6.67955E-13 | – | |
| MobiDBLite | 137 | 171 | 35 | - | – | |
| MobiDBLite | 141 | 171 | 31 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0192600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…