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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0195300 |
| Transcript ID | LotjaGi6g1v0195300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoxygenase; TAIR: AT3G45140.1 lipoxygenase 2; Swiss-Prot: sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SQ26|A0A0B2SQ26_GLYSO Lipoxygenase; Found in the gene: LotjaGi6g1v0195300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49178510..49180488) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTGCAGGCCATTAAAGAGAAGAAATTGTTTATGCTAGACTACCATGATTTATTCTTACCATATGTAAGTAAAGTG AGAAAGATTGAGGGTACCACACTCTATGGATCACGAACATTGTTCTTTCTCACCAAAGAAGGCACATTGAAGCCACTAGC TATTGAGCTCACTAGACCAGCCATGGATGGTAAGCCACAGTGGAAGCAAGTCTTCACACCTGCTCCTCATTCCATAGGTC TTTGGCTTTGGAGGCTTGCCAAGACTCATGTTCTTGCCCATGATTCTGGCTATCATGAACTTATAAGCCATTGGTTAGTT CAATCATATTATTCTCTCTTGTCATGTATTGGTTTAAGTTCCGAGTAGTCATAACAATCCTAAATTCATATATGATGGTA ATTTGAGTCGTTCAATTAAAATCAAATAACTCATGTGTTTCAAGATCGAACAACTGCTAAGTTTAATATCTAAATCGTCT ATTCTTGATTGAACGACTAAGTCTTTAAATCTAGAGAAATCCAGATTCCTAGTATTTAAGATATGATTAATTATTCTAAC AAGTAGTTGGTGTGGGAAGTTTAGTGAGTCTTAACTAGGGGAACTAATTTTTTTTACATTTAAATCATCAATTTTTGCAG GTTAAGGACGCATTGTGTTATAGAACCCTTTGTCATTGCAACAAATAGGCAACTCAGTGCCATGCACCCAATCTACAGGT TATTGAATCCACATCTGAGATATACTATGGAGATCAACGCCCTTGGCCGCGAAGTGCTTATTAACGCAAATGGGGTCATT GAAACCTCATTCTTTACCAGAAAATACTCAATGGAATTAAGCTCTGTGGCATATGATCAACTTTGGCAATTTGATTTGCA ATCACTTCCTAATGATCTTATTCACAGGTAAAGTTTGCAAAGGTGCATGCCTTTAGGCTTTGTTTGTGTTTCCTTCTTGT TTTAAACATGTTAATTGAACATTCACTTGATGGAGTAATTAAATTGTTTCTTTCAGAGGAATGGCTGTTGAAGATCCTAA TGCTCCTCATGGCCTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTCATTGTATGGGATGCCATTAAAC AATGGGTCACGGATTATGTCAACCATTACTATCCAAGCTTTGATGTCATAGAATCTGACCATGAGCTTCAATCATGGTGG ACAGAAATTCGAATGGTCGGTCATGGAGACAAATTTGAAGAACTGTGGTGGCCGAATCTTAAAACACCAGAAGACCTTAT TGACATCGTCGCCACGGTAGCATGGGTAGCCTCTGCTCATCATGCAGCTACAAACTTTGCCCAATATGCTTATGGAGGCT ATTTCCCTAATCGACCCACAATTGCTAGAAACAAAATGCCTACAGAAGACCCTACTAAGGAAGAGTGGGAGAAGTTTTTA AATAAGCCTGAACAAACCCTTTTGGAGTGTTTCCCATCACAGATCCAAGCAACTTTAGTGATGGTCATCTTGAACTTGTT ATCATATCATTCACCAGATGAAGAGTACCTGGGGCAATACATGGAGCCATCATGGGCAGAGAATCCAACTATAAAGGAAT CATTTGAAAGGTTTAGTGGGAGACTGAAGGAGATTGAAGGTATTATAGACTCAAGGAATGCAGATAGCAATTTGAAGAAT AGGCATGGAGCTGGAGTGATTCCTTATGAGCTAATGAAACCACTTTCAAGGCCTGGAGTCACTGGAAAAGGTGTTCCATA TAGCATAACCATTTAAAGATTGGTTACTTTGATTAGAATGTGTTGATTAATAAATTCTTCCAAGGGTGATATGTTTAGCA AGGTCTTATATATAAAGTTCATATTCATATAAATTTTTTATATCCCACATGTTTATGATCATGTATTATATTAATTGCAT TGCTACAAGGGTATTGTATAAATTTGTTTATCGTTTAACAAGGAATAAACGTATAGTTT
CDS sequence (LotjaGi6g1v0195300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGACTACCATGATTTATTCTTACCATATGTAAGTAAAGTGAGAAAGATTGAGGGTACCACACTCTATGGATCACG AACATTGTTCTTTCTCACCAAAGAAGGCACATTGAAGCCACTAGCTATTGAGCTCACTAGACCAGCCATGGATGGTAAGC CACAGTGGAAGCAAGTCTTCACACCTGCTCCTCATTCCATAGGTCTTTGGCTTTGGAGGCTTGCCAAGACTCATGTTCTT GCCCATGATTCTGGCTATCATGAACTTATAAGCCATTGGTTAAGGACGCATTGTGTTATAGAACCCTTTGTCATTGCAAC AAATAGGCAACTCAGTGCCATGCACCCAATCTACAGGTTATTGAATCCACATCTGAGATATACTATGGAGATCAACGCCC TTGGCCGCGAAGTGCTTATTAACGCAAATGGGGTCATTGAAACCTCATTCTTTACCAGAAAATACTCAATGGAATTAAGC TCTGTGGCATATGATCAACTTTGGCAATTTGATTTGCAATCACTTCCTAATGATCTTATTCACAGAGGAATGGCTGTTGA AGATCCTAATGCTCCTCATGGCCTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTCATTGTATGGGATG CCATTAAACAATGGGTCACGGATTATGTCAACCATTACTATCCAAGCTTTGATGTCATAGAATCTGACCATGAGCTTCAA TCATGGTGGACAGAAATTCGAATGGTCGGTCATGGAGACAAATTTGAAGAACTGTGGTGGCCGAATCTTAAAACACCAGA AGACCTTATTGACATCGTCGCCACGGTAGCATGGGTAGCCTCTGCTCATCATGCAGCTACAAACTTTGCCCAATATGCTT ATGGAGGCTATTTCCCTAATCGACCCACAATTGCTAGAAACAAAATGCCTACAGAAGACCCTACTAAGGAAGAGTGGGAG AAGTTTTTAAATAAGCCTGAACAAACCCTTTTGGAGTGTTTCCCATCACAGATCCAAGCAACTTTAGTGATGGTCATCTT GAACTTGTTATCATATCATTCACCAGATGAAGAGTACCTGGGGCAATACATGGAGCCATCATGGGCAGAGAATCCAACTA TAAAGGAATCATTTGAAAGGTTTAGTGGGAGACTGAAGGAGATTGAAGGTATTATAGACTCAAGGAATGCAGATAGCAAT TTGAAGAATAGGCATGGAGCTGGAGTGATTCCTTATGAGCTAATGAAACCACTTTCAAGGCCTGGAGTCACTGGAAAAGG TGTTCCATATAGCATAACCATTTAA
Protein sequence (LotjaGi6g1v0195300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDYHDLFLPYVSKVRKIEGTTLYGSRTLFFLTKEGTLKPLAIELTRPAMDGKPQWKQVFTPAPHSIGLWLWRLAKTHVL AHDSGYHELISHWLRTHCVIEPFVIATNRQLSAMHPIYRLLNPHLRYTMEINALGREVLINANGVIETSFFTRKYSMELS SVAYDQLWQFDLQSLPNDLIHRGMAVEDPNAPHGLKLTIEDYPFANDGLIVWDAIKQWVTDYVNHYYPSFDVIESDHELQ SWWTEIRMVGHGDKFEELWWPNLKTPEDLIDIVATVAWVASAHHAATNFAQYAYGGYFPNRPTIARNKMPTEDPTKEEWE KFLNKPEQTLLECFPSQIQATLVMVILNLLSYHSPDEEYLGQYMEPSWAENPTIKESFERFSGRLKEIEGIIDSRNADSN LKNRHGAGVIPYELMKPLSRPGVTGKGVPYSITI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 64 | 64 | 2.7E-22 | – | |
| Pfam | 1 | 417 | 417 | 7.5E-215 | ||
| ProSiteProfiles | 1 | 434 | 434 | 194.237 | ||
| PANTHER | 1 | 434 | 434 | 3.3E-279 | ||
| SUPERFAMILY | 1 | 434 | 434 | 3.92E-182 | ||
| PANTHER | 1 | 434 | 434 | 3.3E-279 | – | |
| PRINTS | 24 | 48 | 25 | 3.3E-14 | ||
| Gene3D | 66 | 433 | 368 | 1.7E-157 | – | |
| PRINTS | 69 | 86 | 18 | 1.4E-21 | ||
| ProSitePatterns | 87 | 101 | 15 | - | ||
| PRINTS | 87 | 104 | 18 | 1.4E-21 | ||
| PRINTS | 107 | 127 | 21 | 1.4E-21 | ||
| ProSitePatterns | 114 | 124 | 11 | - | ||
| PRINTS | 347 | 361 | 15 | 3.3E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0195300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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