Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0195700 |
| Transcript ID | LotjaGi6g1v0195700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoxygenase; TAIR: AT3G45140.1 lipoxygenase 2; Swiss-Prot: sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic; TrEMBL-Plants: tr|A0A072VA97|A0A072VA97_MEDTR Linoleate 13S-lipoxygenase 2-1, related protein; Found in the gene: LotjaGi6g1v0195700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49197074..49200191) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAATAATTGGTTATTCCACAGTTGAAGAGGTACCAAACAATATATAATGACTTAATTGAATAATGATCTATGATGAT TAAAAATGGTTAAATCTAAACTGCAGGTTATTAAAGAGAAGAAATTGTTTATGCTAGACTACCATGATTTATTCTTACCA TATGTAAGCAAAGTGAGAAAGATTGAGGGAACCACACTCTATGGATCACGAACATTGTTCTTTCTCACCAAAGAAGGCAC ATTGAAGCCACTAGCTATTGAGCTCACTAGACCAGCCATGGATGGTAAGCCACAGTGGAAGGAAGTCTTCACACCTGCTC CTCATTCCACTGGTCTTTGGCTTTGGAGGTTTGCCAAGACTCATGTTCTTGCCCATGATTCTGGCTATCATGAACTTATA AGCCATTGGTTAGTTCAATCATATTATTCTCTTTTCCCATGTATTGATTTAGGTTCCGAGTAGTCATAACAATCCAAAAC TCATATATGATGGTAATTTGAGTTGTTCAAATAACTCATGTGTTTCAAGATCGGACAACTGCTAAGTTTAATATCTAAAT CGTATGTTCTTGATTGATCGACCAAGTCTTTAATTCTAGAGAATCCAAATTCCATGAATTTAAGATATGATTAATTATTC TAACAAGTAGTTGGTGTGGGAAGTTTTGTGAGTCTTAACTAGGGGTACTAGTTGTTTTACATTTAAATCATCAATTTATC AATTTTTGCAGGTTAAGGACTCATTGTGTTATAGAACCCTTTGTCATTGCAACAAATAGGCAACTTAGTGCCATGCACCC AATCTACAAGTTATTGAATCCACATATGAGATATACTATGGAGATCAATGCCCTTGGCCGCGAAGTGCTTATTAACGCAA ATGGGGTCATTGAAACCACATTCTTTACCAGAAAATATTCAATGGAATTAAGCTCTGTCGCATATGATCAACTTTGGCAA TTTGATTTGCAATCACTTCCTAATGATCTTATTCACAGGTAAAGTTTGCAAAGGGGCATGCCTTTAGGTTTTGTTTGTGT TTCCTTCTTGTTTTAAACATGTTAATTAAACATTCACTTGATGGAGTATTTAAATTGTTTCTTTCAGAGGAATGGCTGTT GAAGATCCTAATGCTCCTCATGGCCTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTCATTGTATGGGA TGCCATTAAACAATGGGTCACAGATTATGTCAACCATTACTATCCGAGCTTTGATGTCATAGAATCTGACCACGAGCTCC AATCATGGTGGACAGAAATTCGAATGGTTGGTCATGGAGACAAATATGAAGAACCGTGGTGGCCAAATCTTAAAACACCA AAAGACCTTATTGACATCGTCGCCACAGTAGCATGGGTAGCCTCTGCTCATCATGCAGCTACAAACTTTGCCCAATATGC TTATGGAGGCTATTTCCCTAATCGACCCACAATTGCTAGAAACAAAATGCCTACAGAAGACCCTACTAAGGAAGAGTGGG AGAAGTTTTTAAATAAGCCTGAACAAACCCTTTTGGAGTGTTTCCCATCACAGATCCAAGCAACTTTAGTGATGGTCATC TTGAACTTGTTATCATATCATTCACCAGATGAAGAGTACCTGGGGCAATACATGGAGCCATCATGGGCTGAGAATCCAAC TATAAAGGAAGCCTTCGGAAGGTTTAGTGGGAGACTGAAGGAGATTGAAGGTATTATAGACTCAAGGAATGCAAATAGCA ATTTGAAGAATAGGCATGGAGCTGGGATGATTCCTTATGAGCTAATGAAACCACTTTCAAAGCCTGGAGTCACTGGAAAA GGTGTTCCATATAGCATAACCATTTAAAGATTGGTTACTTTGATTAGAATGGGTTGATTAATAAATTCTTCGAAGGGTGA TATGTTTAGCAAGGTTTTATATATAAAGTTCATATTCATACTTATAAATTTGTTATATCCCACATGTTTATGATCATGTA TTAATTGCATTGCTACATGGGTCTTGTATCAATTTGTTTATCGTTTAACAAGGAATAAACATATAGTTTCTTTTGAAAAG AAGTTTCTTCTCTCACCTAATTACTTCATGAAGGTAGTATGATTTTTTTGCGCAAGGTTGTCATTAGATGAACTTGACTA GTACTGTGGGGAAATTTTTTCGCAAGGTTGTCATTGCTTCAAATCACGTAAGTGTGCTTTTTATTCAACAACAAAAAGCA ACAATTTGGGTTTGACCCACTGACCCGGTTTACTTGTACAGGGAATAGTTACTTTGTTGTTCTGTATGATAATGTTAGGT TTATGTCCTTTGTGCTATCAAGGGAATTGAAGGTTGCCATTGGAATTAGAAAAGCTCAAGACAACTCTTCCTTTTTGTCT CTCTCCCATTGTCTCCATGCGCTAATCATCTGCCTGTGGCAAATCATCTTCACCATTTCTGAGGTAAAAAATTCAGACAT ATTCGGTTTCTTTTTTACCCCTTTAGATTATAAAACTAGATGAAGTACCTGGTTCAAGAATGCACATTGGTGGAAGATTC AGTGAGAGTTTCACACAAAAATCGAAAAGTTCAATCAGAATCATTAAAAAAGGGTAGAAATAAAATAAAAATAAAAATTG ATAAAGTAAATATGTGTGGTGAAAATTTTAATATAAACAATAAATGTATTCGAGTTACAACAACCTTTCCCAGTTATTGT TTCACTTTAAGTAATTAGACAAAGTGCAAGAAGTTTCAGCAATGAACAACAATGAAATCTATAACAAAAAATGAGCAACA ACATAAAATGCAGTAGAGAAGTTTGATCAGCAAAGAAGGATGAAAGACAGCAAAAGAAAGAGAGAACCTGAAACTTGAAG GTTTGACTAAATGGAAGAATCAAAGAGGATCAGGACACCAATGCAAAACAGTGATGGAAAGCATACTTCAGCTTCACAAT TTGAAGAGATATTATTTCATTCTCAAATCTTAGGGATAAGGCTTTTGTGCTTCAATATGTTCAGTTATTTACTCAATCAT TGGAGTTTTATGAAAATATATAGGGAAAGGTTTGGAAGATACCAAGAAGTTTGTATTCAAGCTCCGAGTCAAGAGGAG
CDS sequence (LotjaGi6g1v0195700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAATCTAAACTGCAGGTTATTAAAGAGAAGAAATTGTTTATGCTAGACTACCATGATTTATTCTTACCATATGT AAGCAAAGTGAGAAAGATTGAGGGAACCACACTCTATGGATCACGAACATTGTTCTTTCTCACCAAAGAAGGCACATTGA AGCCACTAGCTATTGAGCTCACTAGACCAGCCATGGATGGTAAGCCACAGTGGAAGGAAGTCTTCACACCTGCTCCTCAT TCCACTGGTCTTTGGCTTTGGAGGTTTGCCAAGACTCATGTTCTTGCCCATGATTCTGGCTATCATGAACTTATAAGCCA TTGGTTAAGGACTCATTGTGTTATAGAACCCTTTGTCATTGCAACAAATAGGCAACTTAGTGCCATGCACCCAATCTACA AGTTATTGAATCCACATATGAGATATACTATGGAGATCAATGCCCTTGGCCGCGAAGTGCTTATTAACGCAAATGGGGTC ATTGAAACCACATTCTTTACCAGAAAATATTCAATGGAATTAAGCTCTGTCGCATATGATCAACTTTGGCAATTTGATTT GCAATCACTTCCTAATGATCTTATTCACAGAGGAATGGCTGTTGAAGATCCTAATGCTCCTCATGGCCTAAAGCTAACAA TTGAAGACTACCCTTTTGCCAATGATGGTCTCATTGTATGGGATGCCATTAAACAATGGGTCACAGATTATGTCAACCAT TACTATCCGAGCTTTGATGTCATAGAATCTGACCACGAGCTCCAATCATGGTGGACAGAAATTCGAATGGTTGGTCATGG AGACAAATATGAAGAACCGTGGTGGCCAAATCTTAAAACACCAAAAGACCTTATTGACATCGTCGCCACAGTAGCATGGG TAGCCTCTGCTCATCATGCAGCTACAAACTTTGCCCAATATGCTTATGGAGGCTATTTCCCTAATCGACCCACAATTGCT AGAAACAAAATGCCTACAGAAGACCCTACTAAGGAAGAGTGGGAGAAGTTTTTAAATAAGCCTGAACAAACCCTTTTGGA GTGTTTCCCATCACAGATCCAAGCAACTTTAGTGATGGTCATCTTGAACTTGTTATCATATCATTCACCAGATGAAGAGT ACCTGGGGCAATACATGGAGCCATCATGGGCTGAGAATCCAACTATAAAGGAAGCCTTCGGAAGGTTTAGTGGGAGACTG AAGGAGATTGAAGGTATTATAGACTCAAGGAATGCAAATAGCAATTTGAAGAATAGGCATGGAGCTGGGATGATTCCTTA TGAGCTAATGAAACCACTTTCAAAGCCTGGAGTCACTGGAAAAGGTGTTCCATATAGCATAACCATTTAA
Protein sequence (LotjaGi6g1v0195700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKSKLQVIKEKKLFMLDYHDLFLPYVSKVRKIEGTTLYGSRTLFFLTKEGTLKPLAIELTRPAMDGKPQWKEVFTPAPH STGLWLWRFAKTHVLAHDSGYHELISHWLRTHCVIEPFVIATNRQLSAMHPIYKLLNPHMRYTMEINALGREVLINANGV IETTFFTRKYSMELSSVAYDQLWQFDLQSLPNDLIHRGMAVEDPNAPHGLKLTIEDYPFANDGLIVWDAIKQWVTDYVNH YYPSFDVIESDHELQSWWTEIRMVGHGDKYEEPWWPNLKTPKDLIDIVATVAWVASAHHAATNFAQYAYGGYFPNRPTIA RNKMPTEDPTKEEWEKFLNKPEQTLLECFPSQIQATLVMVILNLLSYHSPDEEYLGQYMEPSWAENPTIKEAFGRFSGRL KEIEGIIDSRNANSNLKNRHGAGMIPYELMKPLSKPGVTGKGVPYSITI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 449 | 449 | 196.504 | ||
| Gene3D | 2 | 79 | 78 | 2.2E-27 | – | |
| SUPERFAMILY | 7 | 449 | 443 | 4.58E-188 | ||
| Pfam | 7 | 432 | 426 | 5.6E-220 | ||
| PANTHER | 8 | 449 | 442 | 7.6E-285 | ||
| PANTHER | 8 | 449 | 442 | 7.6E-285 | – | |
| PRINTS | 39 | 63 | 25 | 3.5E-14 | ||
| Gene3D | 81 | 448 | 368 | 9.0E-159 | – | |
| PRINTS | 84 | 101 | 18 | 2.6E-21 | ||
| PRINTS | 102 | 119 | 18 | 2.6E-21 | ||
| ProSitePatterns | 102 | 116 | 15 | - | ||
| PRINTS | 122 | 142 | 21 | 2.6E-21 | ||
| ProSitePatterns | 129 | 139 | 11 | - | ||
| PRINTS | 362 | 376 | 15 | 3.5E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0195700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…