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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0197000 |
| Transcript ID | LotjaGi6g1v0197000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation efflux family protein; TAIR: AT1G16310.1 Cation efflux family protein; Swiss-Prot: sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10; TrEMBL-Plants: tr|A0A151T8G0|A0A151T8G0_CAJCA Putative metal tolerance protein C3; Found in the gene: LotjaGi6g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49393237..49395949) extracted from Lotus japonicus Gifu genome v1.2.
GCACAAACAAACTAATGCTTAGAGCACAAAGCATGACAAAGATGGCAACTGATGAACTTCGGATTGATTCCTCTGATTAC CGGGCAGAACTTCTTTCCCCTGGAATAGCTGCGGAGAATGTGTCCATGGCTAGGCAACCTTCATGGAGAATCAACATGGA TGAACATCGCTTGCCAGACAGGCACATGGAGTCTCATTTTGGCTTTGGATTCTTCCTAAGAACACTAAGTATATAATATA TAAACTTCAATTCATGAGCACCAATTTTTCCCCGGCCCTTACCAGTTTTCTCTTAATTTCATGTTTCTAAAATGAATTTT GCATCTCTTAGGGAGGCAGAGGAAACTTGGGAAGTATTATAAGAGGCAGGAAAGGCTTCTCAAAGGGTATCAAGAAGTGG ACTCATATACTGATTTGGGCATGTTACCTGGGAATTTATCAGAGGTTTTGGACACAAAATTTTACTCTTTTCTAGTTTTT GTTCTTTTTCATATGTTTGAGTCTTATGTATGAAAAAAGATTCAGATGGAAGAACTAACCTCACCATAATGTGGATGTCC AGCTCGAACAACACTATCTGTTTACCTGCATTACACAAAACAAAAAAGATTAAAATGGCCTCCTATCTAGCTAATTCTTG AAATGGAAACTTCTCATTTTCAGGATGAAGTGAAGCAACTGGAGAGGAGTGAGAAGGTGGCAATTTATGCATCAAACATA GGGAACATGGTGCTGTTTGCAGCAAAAGTGTATGCTTCCCTTCAGAGTAGATCACTGGCTGTGATTGCATCAACTATGGA CTCACTATTGGATCTCTTGTCAGGATTTATACTTTGGTTCACTTCTCATGCCATGAGCAAACCAAACCATCACAAGTACC CCATTGGCAAGAATAGGATGCAGCCTGTGGTAATTTAGAGTGATTATAGGTGAACATACACTTTCAGTCAGACATTCTAT TGACATACATGTTAGTGATAATTTTGAAATTGCCACACTTATTAGCGGCAGTTGCTAACATGTCAATTGGATGTATGGCG GAAGCGTATGTTCAAAAACCATTTTCGTTTAATTCCTTAATAATATAGGAATTAAATGATGAATTGAATTTTAATGCAAA ATATTTTGACAGGGCATAGTTGTCTTCGCATCAGTCATGGCCACACTGGGATTACAAATACTATTTGAATCAATAAGGGA GATCATCACAAAGGCTCAACCTGATAGAGATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTTGG TAAAGGTTGTTCTGATGAGTTATTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTGAT GTAATCACAAACTCAATTGGTCTTGCCACTGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCCAT CGTGGTATGCATGTCTTTCAATTTATATGTAGCACATTAAATTGGGTAATTATAGATGGACATTCACTTTTCCACAATCT CAACCAAAAAACTGCTGCTGAAGCATATGTTGTTGAATGTCTAGCAAAAGTGAATGTCCATGTAACATTTTTTGCATTAA ATTTTGTTCATTTTTGTTCACAAAGCAAAATTCAGTTATAACATTAAACCTACCCAACTTGAATATAATTGTCTCAGTCG AAGATACCTGTTGTTTAAACTAAAAAAAACAATCATTATATATGCAGATAGCTTTATATACCATCAGCAATTGGGCAAAA ACGGTGATGGAGAATGTGTGGTCATTGATTGGAAAAACAGCACCACCAGAGTACCTTGCAAAGTTAACATATCTTTGTTG GAACCATGACAAGGAGATCAAGCACATTGACACACTGCGAGCCTACACATTTGGGTCCTATTACTTTGTGGAGGTAGACA TTGTGGTTTCACAAGAAATGTCACTTGGTCAAGCACATGACATTGGAGAGACACTTCAAGACAAGCTTGAAAAACTCCCT GAAATTGAGAGAGCTTTTGTTCATGTTGATTTGAACACCACTCATAAGCTTGAACACAAGCAGCTGAAGGTGGCTTAGAA ATTAAACCAAGCAAATTATGGCAATGTTTTGAGATTAATTGATTTACCTATCATTTGGTTGGCGTATAGATTTTGCTGTT GTATTTTTTTTACGTTGATTCCGTTGTTGTAAAGTGTTTCCCAAGTTAGAAAATAAGTTTATACTTAGGGCCGGTTTGAT AGCAGTTTTAGTTTTCAGTTTTTAAAACAGTTTTCAGAAACAATTCTTAAAAACAGTTTTCAGATGAAGAAAGCAGTTTT AATGACATGTTTTCGAACATTTAGAAAACTGATATCTGAAAACTAAAAACTGAAATTGAAAACATCTTTTACCTGTTTTG GTTTTTTAGTTTTAAAAACTGAAAATGAGAACTGTTTTTGAAAACAGGTCTTACCAAACAAGTTTTCAGTTTTTAAAAAC TGAAAACTGTTTTGGAAACAGTTATCAAACAGGCCCTTAATAGTTGGATGTAATTAGGATAGAAAATACTGGGATCTCTT CTATTGTGCACCTTAAATGTAAAATACAATGTAGGTTTAAGTGCTTTTTGTCCCTAGAAAGCTAGTATAGTGTATGAGTG ATTTTGGACCCTTTTAATTTTTTTTTCCGCTTAATTTAGGTCTCTAACTTTTTAAATCAAACAAAAATTTGAT
CDS sequence (LotjaGi6g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGAGCACAAAGCATGACAAAGATGGCAACTGATGAACTTCGGATTGATTCCTCTGATTACCGGGCAGAACTTCT TTCCCCTGGAATAGCTGCGGAGAATGTGTCCATGGCTAGGCAACCTTCATGGAGAATCAACATGGATGAACATCGCTTGC CAGACAGGCACATGGAGTCTCATTTTGGCTTTGGATTCTTCCTAAGAACACTAAGGAGGCAGAGGAAACTTGGGAAGTAT TATAAGAGGCAGGAAAGGCTTCTCAAAGGGTATCAAGAAGTGGACTCATATACTGATTTGGGCATGTTACCTGGGAATTT ATCAGAGGATGAAGTGAAGCAACTGGAGAGGAGTGAGAAGGTGGCAATTTATGCATCAAACATAGGGAACATGGTGCTGT TTGCAGCAAAAGTGTATGCTTCCCTTCAGAGTAGATCACTGGCTGTGATTGCATCAACTATGGACTCACTATTGGATCTC TTGTCAGGATTTATACTTTGGTTCACTTCTCATGCCATGAGCAAACCAAACCATCACAAGTACCCCATTGGCAAGAATAG GATGCAGCCTGTGGGCATAGTTGTCTTCGCATCAGTCATGGCCACACTGGGATTACAAATACTATTTGAATCAATAAGGG AGATCATCACAAAGGCTCAACCTGATAGAGATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTTG GTAAAGGTTGTTCTGATGAGTTATTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTGA TGTAATCACAAACTCAATTGGTCTTGCCACTGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCCA TCGTGATAGCTTTATATACCATCAGCAATTGGGCAAAAACGGTGATGGAGAATGTGTGGTCATTGATTGGAAAAACAGCA CCACCAGAGTACCTTGCAAAGTTAACATATCTTTGTTGGAACCATGACAAGGAGATCAAGCACATTGACACACTGCGAGC CTACACATTTGGGTCCTATTACTTTGTGGAGGTAGACATTGTGGTTTCACAAGAAATGTCACTTGGTCAAGCACATGACA TTGGAGAGACACTTCAAGACAAGCTTGAAAAACTCCCTGAAATTGAGAGAGCTTTTGTTCATGTTGATTTGAACACCACT CATAAGCTTGAACACAAGCAGCTGAAGGTGGCTTAG
Protein sequence (LotjaGi6g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRAQSMTKMATDELRIDSSDYRAELLSPGIAAENVSMARQPSWRINMDEHRLPDRHMESHFGFGFFLRTLRRQRKLGKY YKRQERLLKGYQEVDSYTDLGMLPGNLSEDEVKQLERSEKVAIYASNIGNMVLFAAKVYASLQSRSLAVIASTMDSLLDL LSGFILWFTSHAMSKPNHHKYPIGKNRMQPVGIVVFASVMATLGLQILFESIREIITKAQPDRDPVKEKWMIGIMVTATL VKVVLMSYCRRFKNEIVRAYAQDHFFDVITNSIGLATAVLAIKFYWWLDPLGAIVIALYTISNWAKTVMENVWSLIGKTA PPEYLAKLTYLCWNHDKEIKHIDTLRAYTFGSYYFVEVDIVVSQEMSLGQAHDIGETLQDKLEKLPEIERAFVHVDLNTT HKLEHKQLKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 120 | 120 | - | – | |
| PANTHER | 15 | 407 | 393 | 8.9E-235 | – | |
| PANTHER | 15 | 407 | 393 | 8.9E-235 | – | |
| SUPERFAMILY | 118 | 317 | 200 | 4.58E-44 | ||
| Gene3D | 119 | 316 | 198 | 4.7E-34 | ||
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 121 | 140 | 20 | - | – | |
| TIGRFAM | 122 | 396 | 275 | 1.4E-37 | ||
| Pfam | 125 | 315 | 191 | 4.0E-35 | ||
| Phobius | 141 | 145 | 5 | - | – | |
| Phobius | 146 | 169 | 24 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 170 | 189 | 20 | - | – | |
| Phobius | 190 | 209 | 20 | - | – | |
| TMHMM | 191 | 210 | 20 | - | – | |
| Phobius | 210 | 228 | 19 | - | – | |
| Phobius | 229 | 248 | 20 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 249 | 267 | 19 | - | – | |
| TMHMM | 265 | 287 | 23 | - | – | |
| Phobius | 268 | 288 | 21 | - | – | |
| Phobius | 289 | 411 | 123 | - | – | |
| SUPERFAMILY | 320 | 396 | 77 | 3.14E-17 | ||
| Pfam | 322 | 396 | 75 | 5.4E-14 | ||
| Gene3D | 325 | 398 | 74 | 1.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0197000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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