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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0197000 |
| Transcript ID | LotjaGi6g1v0197000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation efflux family protein; TAIR: AT1G16310.1 Cation efflux family protein; Swiss-Prot: sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10; TrEMBL-Plants: tr|G7J6P9|G7J6P9_MEDTR Cation diffusion facilitator family transporter; Found in the gene: LotjaGi6g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49393872..49395280) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAGCAACTGGAGAGGAGTGAGAAGGTGGCAATTTATGCATCAAACATAGGGAACATGGTGCTGTTTGCAGCAAAAGT GTATGCTTCCCTTCAGAGTAGATCACTGGCTGTGATTGCATCAACTATGGACTCACTATTGGATCTCTTGTCAGGATTTA TACTTTGGTTCACTTCTCATGCCATGAGCAAACCAAACCATCACAAGTACCCCATTGGCAAGAATAGGATGCAGCCTGTG GTAATTTAGAGTGATTATAGGTGAACATACACTTTCAGTCAGACATTCTATTGACATACATGTTAGTGATAATTTTGAAA TTGCCACACTTATTAGCGGCAGTTGCTAACATGTCAATTGGATGTATGGCGGAAGCGTATGTTCAAAAACCATTTTCGTT TAATTCCTTAATAATATAGGAATTAAATGATGAATTGAATTTTAATGCAAAATATTTTGACAGGGCATAGTTGTCTTCGC ATCAGTCATGGCCACACTGGGATTACAAATACTATTTGAATCAATAAGGGAGATCATCACAAAGGCTCAACCTGATAGAG ATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTTGGTAAAGGTTGTTCTGATGAGTTATTGTCGC AGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTGATGTAATCACAAACTCAATTGGTCTTGCCAC TGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCCATCGTGGTATGCATGTCTTTCAATTTATATG TAGCACATTAAATTGGGTAATTATAGATGGACATTCACTTTTCCACAATCTCAACCAAAAAACTGCTGCTGAAGCATATG TTGTTGAATGTCTAGCAAAAGTGAATGTCCATGTAACATTTTTTGCATTAAATTTTGTTCATTTTTGTTCACAAAGCAAA ATTCAGTTATAACATTAAACCTACCCAACTTGAATATAATTGTCTCAGTCGAAGATACCTGTTGTTTAAACTAAAAAAAA CAATCATTATATATGCAGATAGCTTTATATACCATCAGCAATTGGGCAAAAACGGTGATGGAGAATGTGTGGTCATTGAT TGGAAAAACAGCACCACCAGAGTACCTTGCAAAGTTAACATATCTTTGTTGGAACCATGACAAGGAGATCAAGCACATTG ACACACTGCGAGCCTACACATTTGGGTCCTATTACTTTGTGGAGGTAGACATTGTGGTTTCACAAGAAATGTCACTTGGT CAAGCACATGACATTGGAGAGACACTTCAAGACAAGCTTGAAAAACTCCCTGAAATTGAGAGAGCTTTTGTTCATGTTGA TTTGAACACCACTCATAAGCTTGAACACAAGCAGCTGAAGGTGGCTTAG
CDS sequence (LotjaGi6g1v0197000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGTTTGCAGCAAAAGTGTATGCTTCCCTTCAGAGTAGATCACTGGCTGTGATTGCATCAACTATGGACTCACT ATTGGATCTCTTGTCAGGATTTATACTTTGGTTCACTTCTCATGCCATGAGCAAACCAAACCATCACAAGGAGATCATCA CAAAGGCTCAACCTGATAGAGATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTTGGTAAAGGTT GTTCTGATGAGTTATTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTGATGTAATCAC AAACTCAATTGGTCTTGCCACTGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCCATCGTGATAG CTTTATATACCATCAGCAATTGGGCAAAAACGGTGATGGAGAATGTGTGGTCATTGATTGGAAAAACAGCACCACCAGAG TACCTTGCAAAGTTAACATATCTTTGTTGGAACCATGACAAGGAGATCAAGCACATTGACACACTGCGAGCCTACACATT TGGGTCCTATTACTTTGTGGAGGTAGACATTGTGGTTTCACAAGAAATGTCACTTGGTCAAGCACATGACATTGGAGAGA CACTTCAAGACAAGCTTGAAAAACTCCCTGAAATTGAGAGAGCTTTTGTTCATGTTGATTTGAACACCACTCATAAGCTT GAACACAAGCAGCTGAAGGTGGCTTAG
Protein sequence (LotjaGi6g1v0197000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLFAAKVYASLQSRSLAVIASTMDSLLDLLSGFILWFTSHAMSKPNHHKEIITKAQPDRDPVKEKWMIGIMVTATLVKV VLMSYCRRFKNEIVRAYAQDHFFDVITNSIGLATAVLAIKFYWWLDPLGAIVIALYTISNWAKTVMENVWSLIGKTAPPE YLAKLTYLCWNHDKEIKHIDTLRAYTFGSYYFVEVDIVVSQEMSLGQAHDIGETLQDKLEKLPEIERAFVHVDLNTTHKL EHKQLKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 49 | 49 | 1.5E-147 | – | |
| PANTHER | 1 | 49 | 49 | 1.5E-147 | – | |
| Gene3D | 1 | 50 | 50 | 4.5E-6 | ||
| Phobius | 1 | 16 | 16 | - | – | |
| SUPERFAMILY | 2 | 154 | 153 | 5.1E-27 | ||
| Phobius | 17 | 38 | 22 | - | – | |
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 39 | 66 | 28 | - | – | |
| PANTHER | 49 | 244 | 196 | 1.5E-147 | – | |
| PANTHER | 49 | 244 | 196 | 1.5E-147 | – | |
| Gene3D | 51 | 153 | 103 | 2.8E-12 | ||
| Pfam | 53 | 152 | 100 | 7.7E-14 | ||
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 67 | 85 | 19 | - | – | |
| Phobius | 86 | 104 | 19 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 105 | 125 | 21 | - | – | |
| Phobius | 126 | 248 | 123 | - | – | |
| SUPERFAMILY | 157 | 233 | 77 | 1.27E-17 | ||
| Pfam | 159 | 233 | 75 | 2.2E-14 | ||
| Gene3D | 161 | 235 | 75 | 4.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0197000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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