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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0197000 |
| Transcript ID | LotjaGi6g1v0197000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal tolerance protein; TAIR: AT1G16310.2 Cation efflux family protein; Swiss-Prot: sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10; TrEMBL-Plants: tr|G7J6P9|G7J6P9_MEDTR Cation diffusion facilitator family transporter; Found in the gene: LotjaGi6g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49393872..49395951) extracted from Lotus japonicus Gifu genome v1.2.
AAGCACAAACAAACTAATGCTTAGAGCACAAAGCATGACAAAGATGGCAACTGATGAACTTCGGATTGATTCCTCTGATT ACCGGGCAGAACTTCTTTCCCCTGGAATAGCTGCGGAGAATGTGTCCATGGCTAGGCAACCTTCATGGAGAATCAACATG GATGAACATCGCTTGCCAGACAGGCACATGGAGTCTCATTTTGGCTTTGGATTCTTCCTAAGAACACTAAGTATATAATA TATAAACTTCAATTCATGAGCACCAATTTTTCCCCGGCCCTTACCAGTTTTCTCTTAATTTCATGTTTCTAAAATGAATT TTGCATCTCTTAGGGAGGCAGAGGAAACTTGGGAAGTATTATAAGAGGCAGGAAAGGCTTCTCAAAGGGTATCAAGAAGT GGACTCATATACTGATTTGGGCATGTTACCTGGGAATTTATCAGAGGTTTTGGACACAAAATTTTACTCTTTTCTAGTTT TTGTTCTTTTTCATATGTTTGAGTCTTATGTATGAAAAAAGATTCAGATGGAAGAACTAACCTCACCATAATGTGGATGT CCAGCTCGAACAACACTATCTGTTTACCTGCATTACACAAAACAAAAAAGATTAAAATGGCCTCCTATCTAGCTAATTCT TGAAATGGAAACTTCTCATTTTCAGGATGAAGTGAAGCAACTGGAGAGGAGTGAGAAGGTGGCAATTTATGCATCAAACA TAGGGAACATGGTGCTGTTTGCAGCAAAAGTGTATGCTTCCCTTCAGAGTAGATCACTGGCTGTGATTGCATCAACTATG GACTCACTATTGGATCTCTTGTCAGGATTTATACTTTGGTTCACTTCTCATGCCATGAGCAAACCAAACCATCACAAGTA CCCCATTGGCAAGAATAGGATGCAGCCTGTGGTAATTTAGAGTGATTATAGGTGAACATACACTTTCAGTCAGACATTCT ATTGACATACATGTTAGTGATAATTTTGAAATTGCCACACTTATTAGCGGCAGTTGCTAACATGTCAATTGGATGTATGG CGGAAGCGTATGTTCAAAAACCATTTTCGTTTAATTCCTTAATAATATAGGAATTAAATGATGAATTGAATTTTAATGCA AAATATTTTGACAGGGCATAGTTGTCTTCGCATCAGTCATGGCCACACTGGGATTACAAATACTATTTGAATCAATAAGG GAGATCATCACAAAGGCTCAACCTGATAGAGATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTT GGTAAAGGTTGTTCTGATGAGTTATTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTG ATGTAATCACAAACTCAATTGGTCTTGCCACTGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCC ATCGTGGTATGCATGTCTTTCAATTTATATGTAGCACATTAAATTGGGTAATTATAGATGGACATTCACTTTTCCACAAT CTCAACCAAAAAACTGCTGCTGAAGCATATGTTGTTGAATGTCTAGCAAAAGTGAATGTCCATGTAACATTTTTTGCATT AAATTTTGTTCATTTTTGTTCACAAAGCAAAATTCAGTTATAACATTAAACCTACCCAACTTGAATATAATTGTCTCAGT CGAAGATACCTGTTGTTTAAACTAAAAAAAACAATCATTATATATGCAGATAGCTTTATATACCATCAGCAATTGGGCAA AAACGGTGATGGAGAATGTGTGGTCATTGATTGGAAAAACAGCACCACCAGAGTACCTTGCAAAGTTAACATATCTTTGT TGGAACCATGACAAGGAGATCAAGCACATTGACACACTGCGAGCCTACACATTTGGGTCCTATTACTTTGTGGAGGTAGA CATTGTGGTTTCACAAGAAATGTCACTTGGTCAAGCACATGACATTGGAGAGACACTTCAAGACAAGCTTGAAAAACTCC CTGAAATTGAGAGAGCTTTTGTTCATGTTGATTTGAACACCACTCATAAGCTTGAACACAAGCAGCTGAAGGTGGCTTAG
CDS sequence (LotjaGi6g1v0197000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGAGCACAAAGCATGACAAAGATGGCAACTGATGAACTTCGGATTGATTCCTCTGATTACCGGGCAGAACTTCT TTCCCCTGGAATAGCTGCGGAGAATGTGTCCATGGCTAGGCAACCTTCATGGAGAATCAACATGGATGAACATCGCTTGC CAGACAGGCACATGGAGTCTCATTTTGGCTTTGGATTCTTCCTAAGAACACTAAGGAGGCAGAGGAAACTTGGGAAGTAT TATAAGAGGCAGGAAAGGCTTCTCAAAGGGTATCAAGAAGTGGACTCATATACTGATTTGGGCATGTTACCTGGGAATTT ATCAGAGGGCATAGTTGTCTTCGCATCAGTCATGGCCACACTGGGATTACAAATACTATTTGAATCAATAAGGGAGATCA TCACAAAGGCTCAACCTGATAGAGATCCTGTGAAAGAAAAGTGGATGATAGGAATTATGGTGACAGCCACTTTGGTAAAG GTTGTTCTGATGAGTTATTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCACTTCTTTGATGTAAT CACAAACTCAATTGGTCTTGCCACTGCAGTTCTAGCCATCAAATTCTACTGGTGGCTTGATCCTCTTGGAGCCATCGTGA TAGCTTTATATACCATCAGCAATTGGGCAAAAACGGTGATGGAGAATGTGTGGTCATTGATTGGAAAAACAGCACCACCA GAGTACCTTGCAAAGTTAACATATCTTTGTTGGAACCATGACAAGGAGATCAAGCACATTGACACACTGCGAGCCTACAC ATTTGGGTCCTATTACTTTGTGGAGGTAGACATTGTGGTTTCACAAGAAATGTCACTTGGTCAAGCACATGACATTGGAG AGACACTTCAAGACAAGCTTGAAAAACTCCCTGAAATTGAGAGAGCTTTTGTTCATGTTGATTTGAACACCACTCATAAG CTTGAACACAAGCAGCTGAAGGTGGCTTAG
Protein sequence (LotjaGi6g1v0197000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRAQSMTKMATDELRIDSSDYRAELLSPGIAAENVSMARQPSWRINMDEHRLPDRHMESHFGFGFFLRTLRRQRKLGKY YKRQERLLKGYQEVDSYTDLGMLPGNLSEGIVVFASVMATLGLQILFESIREIITKAQPDRDPVKEKWMIGIMVTATLVK VVLMSYCRRFKNEIVRAYAQDHFFDVITNSIGLATAVLAIKFYWWLDPLGAIVIALYTISNWAKTVMENVWSLIGKTAPP EYLAKLTYLCWNHDKEIKHIDTLRAYTFGSYYFVEVDIVVSQEMSLGQAHDIGETLQDKLEKLPEIERAFVHVDLNTTHK LEHKQLKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 109 | 109 | - | – | |
| PANTHER | 15 | 109 | 95 | 1.5E-173 | – | |
| PANTHER | 15 | 109 | 95 | 1.5E-173 | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Gene3D | 107 | 234 | 128 | 1.8E-15 | ||
| PANTHER | 110 | 325 | 216 | 1.5E-173 | – | |
| Phobius | 110 | 127 | 18 | - | – | |
| PANTHER | 110 | 325 | 216 | 1.5E-173 | – | |
| SUPERFAMILY | 111 | 235 | 125 | 1.26E-22 | ||
| Pfam | 112 | 233 | 122 | 1.9E-17 | ||
| TIGRFAM | 114 | 314 | 201 | 1.3E-25 | ||
| Phobius | 128 | 146 | 19 | - | – | |
| Phobius | 147 | 166 | 20 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 186 | 206 | 21 | - | – | |
| Phobius | 207 | 329 | 123 | - | – | |
| SUPERFAMILY | 238 | 314 | 77 | 2.22E-17 | ||
| Pfam | 240 | 314 | 75 | 3.8E-14 | ||
| Gene3D | 242 | 316 | 75 | 7.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0197000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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