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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0199400 |
| Transcript ID | LotjaGi6g1v0199400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF594 family protein; TAIR: AT5G45470.1 transmembrane protein, putative (DUF594); Swiss-Prot: sp|A5GRD7|PNP_SYNR3 Polyribonucleotide nucleotidyltransferase; TrEMBL-Plants: tr|A2Q356|A2Q356_MEDTR DUF594 family protein; Found in the gene: LotjaGi6g1v0199400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49613964..49615868) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACATATCTTTCATCCCAGGGGAACTACAAGACCTATGGGATCTGTGGGGCTTAGAAATACTTGTGATATTGAGTTT CACCATCCAAGTGATCCTCACAGTCTACGGCAGCCGCAGAAAGGACATTCCAGGTATGTGGGTAAGGCTCACAGTTTGGT TCACCTATTTGCTCTCCGCTTCCTTGGCGAAACTCATCATAGGCAAGCTCACGGTAATACCGGAAAGCGATCCGACCGAT CGCAACATCAGGCGCGAATTGAAGGCGTTGTTTGCACCATTGCTTCTTGTGCAAATTGGCAATCCAGATGCCATAACTGC ATACTCAATTGAAGATAACAGGTTGGGATTTAGGCAGCTTCTAACCCTTGTTATACAAGTAGCTGTGGTGATTTGGATCA TTGTAAGAAGCTGGACTCATTCAATGCTCTCTTTTCTGTACCTTCCATTACTTGTATCTGGACTAATCAAGCAGGGAGAA GTTGTTTGGGCTCTCAAATCAGCTCTTAGTAAAACATCTGGAATCATCACTCTTCAAGAGATTGACCAAGAAGCAAACAT GCCTGATTTATTCAGGTTTCTTCCTTTGGACATTCCAAACATTGAATTGATCTTGAAGGCCTATTACCGCTTCACCTCGT TGAAACCTCACCGCGAGAACTGGCTCTACCAGCCTCTATATGAATCCCTTACCTGGATGTCTATAGACGAGTACGCACCA GAGGAAATCTTCAAGATCACGGATGCAGAACTGAGCTTCATGTATGATGTGCTCTACACCAAAGCGCCTATAATCTACAC CAAAGCAGGTTGTGTTCTACGCGTCGTGAGTTTCTTCAATTTAGTTATAACTCTGTGTGGATTTTCAGTCATATTCGAAC CAACCTTTGCCAGCCATTGGAGAGCCTGCTTCATAGTTGGGGTGCTAACAGGTGCTGTAGTTATGGAAGCATACCAGATT TTGCAGTTACCTTTCTCAGATTGGGCTATAGTTCAAATGATCAAGCACCAAAATCTTCCACTTGTGGTTCCATGCCTTAG AATTCTTGGACCTAGAGTAGCCAGTTGGAAAAGGTGGTCAAACACATTGCCACAATTCAACTTGCTCAGCTTTTGCATCC ATGATAAGCCATTAAAGTGTGGGAAGATTCTCAAATACCGGGGAATTGACATGGGGTTGAAGAAGAATAGGAGTAGGACG CGTGTGCGGTTTCCACAAGAATTAAAAGCTCTGGTGGTTCAAGAAATGAAGGATATTGATAGAGAAAGAGGGCTAAAGCC CTTCAACCACAGAGGGGAGTGGTCACTTGGAAGGTATGAATGTCTCAATGATTTCAAATGGAGTATTAAGAGAGATTTTG ACAAGAGCATCACCATATGGCACATTGCAACTGATATCTGCTACTATTCTGATGTTCAATCCAATGCTGCAAACACCAAA ATCCAAATGGCCAAGTCATTGTCAGATTACATGATGTACCTTCTAGCGTTGCGCCCTCATATGCTGTCCATGACCACTGC CAAGATAATATTCCGACACGCCTTCGACAAACTCAAGGCCTTGTTGGTGCAGAAAGAAGAGTCTGTGAAGGATGAGAAAG AAGCATGCAGGATTTTGAGAGTGGAAAGAGTTCCACAGTATTCAAACATGGAGAGGAAATCAGAAACTGTTGTCACATCA AAATGGCATGTGCTGAGGGATGCTCAGAGACTAGCTAGGAAATTGATGGCCAGGGAAGACAGGTGGCAGATCATGTGTAG TGTGTGGGTGGAGATTTTGTGTTACGCTGCAGCAAATTGCACTGTGGATTATCATTCAGAACAAATAAGGAGAGGTGGAG GTTTGATAACTCATGTTTGGATTCTGTTAGCTCATAAGACAGATAAATATCATATCAGTGACTAA
CDS sequence (LotjaGi6g1v0199400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATATCTTTCATCCCAGGGGAACTACAAGACCTATGGGATCTGTGGGGCTTAGAAATACTTGTGATATTGAGTTT CACCATCCAAGTGATCCTCACAGTCTACGGCAGCCGCAGAAAGGACATTCCAGGTATGTGGGTAAGGCTCACAGTTTGGT TCACCTATTTGCTCTCCGCTTCCTTGGCGAAACTCATCATAGGCAAGCTCACGGTAATACCGGAAAGCGATCCGACCGAT CGCAACATCAGGCGCGAATTGAAGGCGTTGTTTGCACCATTGCTTCTTGTGCAAATTGGCAATCCAGATGCCATAACTGC ATACTCAATTGAAGATAACAGGTTGGGATTTAGGCAGCTTCTAACCCTTGTTATACAAGTAGCTGTGGTGATTTGGATCA TTGTAAGAAGCTGGACTCATTCAATGCTCTCTTTTCTGTACCTTCCATTACTTGTATCTGGACTAATCAAGCAGGGAGAA GTTGTTTGGGCTCTCAAATCAGCTCTTAGTAAAACATCTGGAATCATCACTCTTCAAGAGATTGACCAAGAAGCAAACAT GCCTGATTTATTCAGGTTTCTTCCTTTGGACATTCCAAACATTGAATTGATCTTGAAGGCCTATTACCGCTTCACCTCGT TGAAACCTCACCGCGAGAACTGGCTCTACCAGCCTCTATATGAATCCCTTACCTGGATGTCTATAGACGAGTACGCACCA GAGGAAATCTTCAAGATCACGGATGCAGAACTGAGCTTCATGTATGATGTGCTCTACACCAAAGCGCCTATAATCTACAC CAAAGCAGGTTGTGTTCTACGCGTCGTGAGTTTCTTCAATTTAGTTATAACTCTGTGTGGATTTTCAGTCATATTCGAAC CAACCTTTGCCAGCCATTGGAGAGCCTGCTTCATAGTTGGGGTGCTAACAGGTGCTGTAGTTATGGAAGCATACCAGATT TTGCAGTTACCTTTCTCAGATTGGGCTATAGTTCAAATGATCAAGCACCAAAATCTTCCACTTGTGGTTCCATGCCTTAG AATTCTTGGACCTAGAGTAGCCAGTTGGAAAAGGTGGTCAAACACATTGCCACAATTCAACTTGCTCAGCTTTTGCATCC ATGATAAGCCATTAAAGTGTGGGAAGATTCTCAAATACCGGGGAATTGACATGGGGTTGAAGAAGAATAGGAGTAGGACG CGTGTGCGGTTTCCACAAGAATTAAAAGCTCTGGTGGTTCAAGAAATGAAGGATATTGATAGAGAAAGAGGGCTAAAGCC CTTCAACCACAGAGGGGAGTGGTCACTTGGAAGGTATGAATGTCTCAATGATTTCAAATGGAGTATTAAGAGAGATTTTG ACAAGAGCATCACCATATGGCACATTGCAACTGATATCTGCTACTATTCTGATGTTCAATCCAATGCTGCAAACACCAAA ATCCAAATGGCCAAGTCATTGTCAGATTACATGATGTACCTTCTAGCGTTGCGCCCTCATATGCTGTCCATGACCACTGC CAAGATAATATTCCGACACGCCTTCGACAAACTCAAGGCCTTGTTGGTGCAGAAAGAAGAGTCTGTGAAGGATGAGAAAG AAGCATGCAGGATTTTGAGAGTGGAAAGAGTTCCACAGTATTCAAACATGGAGAGGAAATCAGAAACTGTTGTCACATCA AAATGGCATGTGCTGAGGGATGCTCAGAGACTAGCTAGGAAATTGATGGCCAGGGAAGACAGGTGGCAGATCATGTGTAG TGTGTGGGTGGAGATTTTGTGTTACGCTGCAGCAAATTGCACTGTGGATTATCATTCAGAACAAATAAGGAGAGGTGGAG GTTTGATAACTCATGTTTGGATTCTGTTAGCTCATAAGACAGATAAATATCATATCAGTGACTAA
Protein sequence (LotjaGi6g1v0199400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHISFIPGELQDLWDLWGLEILVILSFTIQVILTVYGSRRKDIPGMWVRLTVWFTYLLSASLAKLIIGKLTVIPESDPTD RNIRRELKALFAPLLLVQIGNPDAITAYSIEDNRLGFRQLLTLVIQVAVVIWIIVRSWTHSMLSFLYLPLLVSGLIKQGE VVWALKSALSKTSGIITLQEIDQEANMPDLFRFLPLDIPNIELILKAYYRFTSLKPHRENWLYQPLYESLTWMSIDEYAP EEIFKITDAELSFMYDVLYTKAPIIYTKAGCVLRVVSFFNLVITLCGFSVIFEPTFASHWRACFIVGVLTGAVVMEAYQI LQLPFSDWAIVQMIKHQNLPLVVPCLRILGPRVASWKRWSNTLPQFNLLSFCIHDKPLKCGKILKYRGIDMGLKKNRSRT RVRFPQELKALVVQEMKDIDRERGLKPFNHRGEWSLGRYECLNDFKWSIKRDFDKSITIWHIATDICYYSDVQSNAANTK IQMAKSLSDYMMYLLALRPHMLSMTTAKIIFRHAFDKLKALLVQKEESVKDEKEACRILRVERVPQYSNMERKSETVVTS KWHVLRDAQRLARKLMAREDRWQIMCSVWVEILCYAAANCTVDYHSEQIRRGGGLITHVWILLAHKTDKYHISD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 4 | 631 | 628 | 3.3E-289 | – | |
| PANTHER | 4 | 631 | 628 | 3.3E-289 | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 16 | 35 | 20 | - | – | |
| Phobius | 36 | 46 | 11 | - | – | |
| Phobius | 47 | 67 | 21 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Pfam | 53 | 370 | 318 | 7.0E-47 | ||
| Phobius | 68 | 86 | 19 | - | – | |
| Phobius | 87 | 108 | 22 | - | – | |
| Phobius | 109 | 119 | 11 | - | – | |
| TMHMM | 116 | 135 | 20 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| Phobius | 140 | 144 | 5 | - | – | |
| Phobius | 145 | 165 | 21 | - | – | |
| Phobius | 166 | 270 | 105 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 271 | 292 | 22 | - | – | |
| Phobius | 293 | 297 | 5 | - | – | |
| Phobius | 298 | 318 | 21 | - | – | |
| Phobius | 319 | 634 | 316 | - | – | |
| Coils | 515 | 535 | 21 | - | – | |
| Pfam | 577 | 625 | 49 | 1.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0199400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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