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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0201600 |
| Transcript ID | LotjaGi6g1v0201600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|I1KDI6|I1KDI6_SOYBN Cellulose synthase; Found in the gene: LotjaGi6g1v0201600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49896308..49901732) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCCAGTGCTGGACTGGTCGCCGGGTCACATAACCGCAATGAACTTGTGGTCATTCATGGCCATGAAGAGGTAAT GATCAAAATCTAGTAGTAACAACGAAAGATGAAAGTTATGTACTAGAATAAACACTTTTTCTTCTTTGTGTTTGTTATGA TCAAATAGTACTAGTTTGATTAGTAATATTAACTATCATGCATGTCATGTTACTTTGGTGCAGCACAAGCCTTTGAAGAA CTTGGATGGCCAAGTGTGTGAGATTTGTGGGGATGGCGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATG AGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGAAGCCAGAACTGTCCACAGTGCAAGACC AGATACAAGCGTCTCAAAGGTAAGGACTTTTGTCGAGTGTTTGCGAGTTTTCAGTTTTAAGTTTCAAATGAAAAATTTAA AACAAAACATGTTTGGCTAAAATTGAGCCTGAAATGATTTGTGACTCACTTTTAAAATGTTCTTCCTTTTAAAAATGTGT ACTAATGCTACTGTCAGTCGTCAGATATAGTTGTAGTAGTGTTCAATTGAAATTGGTTGAAATCAAGGTAAACATGGAAG GAAACTGATTATGATCACTACTGTTTGTTGATTATGTTGTAATTGTGCTCAGGGAGTCCACGAGTGGAAGGAGATGATGA TGAAGAGGATGTGGATGACATTGAGCATGAGTTCAACATAGATGATCAAAAGAACAAGCAGGTCAATGTTGTAGAAGCCT TGCTTCATGGGAAGATGAGCTATGGAAGAGGTCTTGAAGATGATGAGAACTCCCAGTTCCCACCTGTAATTTCTGGCGGC CGTTCTCGACCTGTAAGATTTTCACACCATTTCATTCTACACTAGAATTTTTTTCTCATATTCAATAAAACTAAGAGTTC TTCATGATTGCATGCAGGTAAGTGGAGAATTTCCAGTAGGATCACATTATGGGGAGCAGATGTTATCTTCTTCACTGCAT AAACGAATCCATCCATATCCTATGTCTGAATCTGGTAAGATGTAGTCTAGTTTACAAGCCGTATTTCAATTTCATTCGTG GAAACCTTTTGTCACATGAACAGTTGAACACATCCTTGAAATGTTTTTCTTAGAATACTTCAAGTCATGAAATTTATTTA TAAAATGGCTTGCTGTGATGACTAATCCAGGAAGTGTAGCATGGGATGAAAAGAAAGAGGAAGGATGGAAAGATAGAATG GATGACTGGAAATTGCAGCAAGGAAATTTGGGGCCTGAAGCTGATGAAGATACTGATGCATCTATGTATGCTTATTGCAA TTAGGAAACTATCTATGATGTAGTAATTGATAATTAACTATAATGATTAATGAAATGATCAAATGAATAACAGAAATTAT GTGTATATGTAAATTGTTATTGCAGGCTAGATGAAGCAAGGCAACCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAA ATCAATCCATACAGGATGGTGATTGTGGCAAGGCTTGTTATTCTTGCTTTCTTCCTAAGATACAGGATTCTGAACCCGGT ACATGATGCACTGGGGCTATGGCTAACCTCTATCATTTGTGAGATCTGGTTTGCATTTTCATGGATTCTTGATCAGTTTC CCAAATGGTTTCCCATTGATCGCGAGACCTACCTTGATCGTCTTTCCATCAGGTAAAGGTTGCACAATTCCTACAAAAAC ACAACTTTGTCTTAGAAGTGTTAATTTGATGGAGAGACTTATTAAGAGACAAAAGCATAAAGGATATGCATATTTGATTT TATTTGTTTCCCCTTGAAAACTTCTTAGCAAGTTATGTTAAACAAATGAATATACTTAGGGCGCGTTTCGGTGAACAGAT TAATTAAGCCCTTGTGGCAAATTGCACTTGCACATATTGAAATGAACTCAAAATATGTTTGAACTTATGTAGCTGACCAA AATGTTTCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCAGTAGATTTCTTTGTTAGTACTGTGGATCCCATG AAGGAACCTCCTCTGGTTACAGCAAACACCATTCTCTCCATCTTGGCCGTGGATTACCCAGTTGATAAGGTATCATGCTA CATCTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCACTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTGCCAT TCTGTAAGAAATTTTCTATAGAACCTCGAGCACCTGAGATGTACTTCAGTGAGAAAATTGACTATCTTAAGGACAAAGTT CAACCAACCTTTGTTAAAGAGCGTCGAGCAATGAAGGTATGTATTAGGATCTCGTTTGGATATGAACTAAAGAGAACATA TTGAAGCTTATCTGCTAGAAAAAACACCGGATAAGCTCCAATAAGCGTTCTTTGATTCGCATCCAAACAGGCTCTATGTG TACTAAAATGTTTGAAGATTTGAATTTATCTGTTTAGAACAAGGATTCAATGTTGAATTGGGTTTGCTTGACAGAGAGAA TATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAGGTTCCTCCAGAAGGGTGGATCATGCAGGA TGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCAGGGATGATTCAAGTTTTTCTTGGAAACAGTGGAGGTGTTG ATACTGAAGGAAATCAGCTTCCTCGCCTTGTTTATGTTTCGAGAGAGAAAAGGCCTGGTTTTCAACATCACAAGAAAGCT GGTGCCATGAATGCTCTGGTAAAAAAATTTAGCAGCTTTTGCTACTTGTTACTTGCATCATCACATCATTGAATACAACA GTTATTTGGTTCTCCTAAAATAATTGCTGTAATTTCCAGGTTCGGGTCTCTGCTGTTCTCACAAATGCTCCTTTCATGCT GAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTCAGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTG GGAAGAAGGTTTGCTATGTTCAGTTTCCTCAGAGATTTGATGGCATAGATACTCATGATCGTTACGCCAACAGGAACACA GTTTTCTTTGATGTAAGTCAATGCAAAACACTGCCAAAAAACAAGTTTTTCTATGCTATTGATTTTCTTTTAGAATTGGC CAACGTAAAACATGGCCGTATCTTTAATATGGATCAAGTGAGCCATATAGCCGGCCTCACTTAATGGGATAAGGCTTTTG TTTGTTGTTGTTGTAAGCAGAATGCTTGATTTCTTCCCCTTTACAACATTTTTTTCTGCAGATTAACATGAAGGGTCTAG ATGGTATTCAAGGTCCTGTATATGTCGGCACAGGGTGTGTTTTTAGGAGGCAAGCTTTATATGGATATAATCCTCCCAAG GGTCCCAAGAGACCGAAAATGGTAAGCTGTGACTGCTGCCCTTGTTTCGGAAGCCGCAAGAAGCTTAAGCATGCTAAGAG TGATGTAAATGGAGAGGCTGCAAGCCTAAAAGGTTCTCATCTTGTTTTTTCTATCATTTTTCTAATCTATTGGCACTAGT TTGTATGCAAATTGATATCCTTGTAGCTACTCTAACCTTAATTTTCTCACTTGTTTCAATAGGGATGGATGATGACAAAG AAGTGCTCATGTCCCAGATGAACTTTGAAAAGAAATTTGGACAGTCTTCTATATTTGTGACTTCCACCTTGATGGAAGAG GGTGGTGTACCTCCTTCCTCAAGTCCAGCTGGCATGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAA AACTGAATGGGGACTTGAGGTATAACAACAACACCTGACTTATAACTCCTTCATATCTTAGGCTATGCTTGGATATCTGT TGGCATCAGCAATTATACGTAAAAAAAGTAAACGAAACTCTTATTGTGGACTAGAATGAAAGTTTTTTCACATTGCACTC ATCTGGTATGCAAACACACACTTAATTGTTCTACTTAAGAAAGTTATCTCATCCATGCCTTTTCAACTGTGCAGGTTGGC TGGATTTATGGATCTATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGGGGGTGGAGGTCCATTTACTGCAT GCCAAGGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCCCTTG GTTCCATTGAGATATTCTTCAGTCACCATTGCCCTTTATGGTATGGCTACAAGGAAAAGAAGCTAAAGTGGCTTGAGAGA TTTGCCTATGCCAACACAACTATCTACCCCTTCACCTCCATCCCTCTTGTTGCCTACTGTGTTCTTCCTGCAGTTTGCTT ACTCACTGACAAGTTCATCATGCCTCCGGTAACAATTTTCTTCTTCCACTTCATATTATAAAGATTTAAGTGCATGTTTG GAAATCCTTCTACAACCGATTTTGAAGTCAAAATAAATTTTGGGGAGAAGCTTTTGTCCATAACTTCTGGGTGCTATAAT TGATTATGAGGAAAGAGAAGTTGGTCCAAACATGCTATTTTACATGATATGCTTATGAAATTATAACCTCCCACTTTCCA TCATAACCTTTAAAACCACAAGACATAATTTGAATGCTAATAATCTTTATTGTGTAGTAGGGCAAATCTTATAATCCATT ATCCATTTTAGCTAAAAAAAAGCTAGGACCTTTAATACTTACTCAAGGTGCTTATAGAATTCATTCCAACTTATCAAGCC TCTTTGCTTATAATGCTACTTTTTTTGCTTGCTGATGATCCAGATAAGCACTTTTGCTGGTTTGTACTTTATTGCTCTCT TCTCTTCAATCATTGCAACGGGTGTTATTGAGCTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAG TTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTTATACAAGGTCTTCTGAAGGTTCTGGCTGGAATTGACAC CAACTTCACTGTTACATCCAAGGCAACAGATGATGAAGACTTCGGCGAATTATATGCAATTAAGTGGACTACCCTCCTAA TTCCTCCAACCACTATCTTAATCATCAATATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAA TCCTGGGGACCACTATTTGGGAAGCTCTTCTTTTCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTCAAAGGTTTGAT GGGTCGGCAGAACCGCACGCCGACCATTGTCGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTGA GAATTGATCCATTTGTCCTTAAGACTAAGGGACCTGACACCAAGCTATGTGGAATCAACTGCTGA
CDS sequence (LotjaGi6g1v0201600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACTGGAAATTGCAGCAAGGAAATTTGGGGCCTGAAGCTGATGAAGATACTGATGCATCTATGCTAGATGAAGC AAGGCAACCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGGATGGTGATTGTGGCAAGGCTTG TTATTCTTGCTTTCTTCCTAAGATACAGGATTCTGAACCCGGTACATGATGCACTGGGGCTATGGCTAACCTCTATCATT TGTGAGATCTGGTTTGCATTTTCATGGATTCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGCGAGACCTACCTTGA TCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCAGTAGATTTCTTTGTTAGTACTGTGGATC CCATGAAGGAACCTCCTCTGGTTACAGCAAACACCATTCTCTCCATCTTGGCCGTGGATTACCCAGTTGATAAGGTATCA TGCTACATCTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCACTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGT GCCATTCTGTAAGAAATTTTCTATAGAACCTCGAGCACCTGAGATGTACTTCAGTGAGAAAATTGACTATCTTAAGGACA AAGTTCAACCAACCTTTGTTAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTT GTTGCAAAAGCACAGAAGGTTCCTCCAGAAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACTAAGGA TCATCCAGGGATGATTCAAGTTTTTCTTGGAAACAGTGGAGGTGTTGATACTGAAGGAAATCAGCTTCCTCGCCTTGTTT ATGTTTCGAGAGAGAAAAGGCCTGGTTTTCAACATCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCT GTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTCAGAGAGGCCAT GTGCTTCTTGATGGACCCTCAAACTGGGAAGAAGGTTTGCTATGTTCAGTTTCCTCAGAGATTTGATGGCATAGATACTC ATGATCGTTACGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAAGGTCCTGTATAT GTCGGCACAGGGTGTGTTTTTAGGAGGCAAGCTTTATATGGATATAATCCTCCCAAGGGTCCCAAGAGACCGAAAATGGT AAGCTGTGACTGCTGCCCTTGTTTCGGAAGCCGCAAGAAGCTTAAGCATGCTAAGAGTGATGTAAATGGAGAGGCTGCAA GCCTAAAAGGGATGGATGATGACAAAGAAGTGCTCATGTCCCAGATGAACTTTGAAAAGAAATTTGGACAGTCTTCTATA TTTGTGACTTCCACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCTGGCATGCTTAAAGAAGCCATTCA TGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGGTTGGCTGGATTTATGGATCTATCACAGAGGATA TTCTAACAGGTTTCAAGATGCATTGCCGGGGGTGGAGGTCCATTTACTGCATGCCAAGGAGAGCTGCATTCAAGGGTACT GCTCCTATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATATTCTTCAGTCACCA TTGCCCTTTATGGTATGGCTACAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCCAACACAACTATCTACC CCTTCACCTCCATCCCTCTTGTTGCCTACTGTGTTCTTCCTGCAGTTTGCTTACTCACTGACAAGTTCATCATGCCTCCG ATAAGCACTTTTGCTGGTTTGTACTTTATTGCTCTCTTCTCTTCAATCATTGCAACGGGTGTTATTGAGCTGAAATGGAG TGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTTA TACAAGGTCTTCTGAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAAGACTTC GGCGAATTATATGCAATTAAGTGGACTACCCTCCTAATTCCTCCAACCACTATCTTAATCATCAATATTGTTGGTGTTGT TGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTATTTGGGAAGCTCTTCTTTTCCTTCTGGG TGATTGTCCATCTCTATCCATTCCTCAAAGGTTTGATGGGTCGGCAGAACCGCACGCCGACCATTGTCGTGATTTGGTCA GTGCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTGAGAATTGATCCATTTGTCCTTAAGACTAAGGGACCTGACACCAA GCTATGTGGAATCAACTGCTGA
Protein sequence (LotjaGi6g1v0201600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSII CEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDFFVSTVDPMKEPPLVTANTILSILAVDYPVDKVS CYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAL VAKAQKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGNSGGVDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSA VLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVY VGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDVNGEAASLKGMDDDKEVLMSQMNFEKKFGQSSI FVTSTLMEEGGVPPSSSPAGMLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPRRAAFKGT APINLSDRLNQVLRWALGSIEIFFSHHCPLWYGYKEKKLKWLERFAYANTTIYPFTSIPLVAYCVLPAVCLLTDKFIMPP ISTFAGLYFIALFSSIIATGVIELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEDF GELYAIKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWS VLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 11 | 830 | 820 | 0.0 | – | |
| PANTHER | 11 | 830 | 820 | 0.0 | – | |
| Phobius | 43 | 60 | 18 | - | – | |
| TMHMM | 48 | 65 | 18 | - | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 72 | 91 | 20 | - | – | |
| Phobius | 72 | 91 | 20 | - | – | |
| Phobius | 92 | 571 | 480 | - | – | |
| Pfam | 125 | 827 | 703 | 0.0 | ||
| SUPERFAMILY | 139 | 620 | 482 | 4.99E-12 | ||
| Coils | 223 | 243 | 21 | - | – | |
| Gene3D | 262 | 416 | 155 | 1.1E-14 | ||
| Phobius | 572 | 592 | 21 | - | – | |
| Phobius | 593 | 611 | 19 | - | – | |
| TMHMM | 610 | 632 | 23 | - | – | |
| Phobius | 612 | 632 | 21 | - | – | |
| Phobius | 633 | 643 | 11 | - | – | |
| TMHMM | 644 | 666 | 23 | - | – | |
| Phobius | 644 | 662 | 19 | - | – | |
| Phobius | 663 | 681 | 19 | - | – | |
| TMHMM | 681 | 703 | 23 | - | – | |
| Phobius | 682 | 702 | 21 | - | – | |
| Phobius | 703 | 722 | 20 | - | – | |
| Phobius | 723 | 744 | 22 | - | – | |
| TMHMM | 728 | 750 | 23 | - | – | |
| Phobius | 745 | 763 | 19 | - | – | |
| TMHMM | 760 | 782 | 23 | - | – | |
| Phobius | 764 | 782 | 19 | - | – | |
| Phobius | 783 | 793 | 11 | - | – | |
| Phobius | 794 | 814 | 21 | - | – | |
| TMHMM | 795 | 814 | 20 | - | – | |
| Phobius | 815 | 833 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0201600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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