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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0202800 |
| Transcript ID | LotjaGi6g1v0202800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein 2; TAIR: AT5G57930.2 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSI8|I3SSI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0202800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50002342..50004189) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAAATGAGCCGCAAAAACCATTGTCTTTGTCTGCACCAAAGAATGGATTGCTGGTGAAGAAACTCATACCAACTGC TTATAAAGTGTATAATTCGAGAATCACTTTGATTAACAATCTGAAGAAGCTGCTCAAAGTAGTCCCTGTACACGCTTGTG GGTAATTATATTCCTTCATGTCTTCTAACATACTTTTGCCTGATGTAGAGCTTATGTAAATTATTGGTAAATGACATGAT AATTATGTGTTTCTGATTCCTCACAAGATTTTCTTGCTGCTTATAATGGTCTCATAGACATTTTGTTTGAAATGAATGAA TAAGTCACAAATCTAGATTTTCACTGTATCATTGTTAGTGTAACTAAAACCTAAATCAAATATTGGTAATACCACTATGA TTTGATGTCTGGTGGGAAGCAAAGCAAATGTTGAGTACTTAGCCTCTATGAGCCTCACATTATGGCGGAGCTATTATACA TATGAAAGGGATGGTATGGTACATAGAAAACTACCAGTTCACCTTGCTGCCTTTGCTGCCTTCCTATTCCTTACCAATCT TGTGTACTGCTTGCTGCTGCCAGAGCTTCAAGACTGAGGACATTCATTGATAGTTGTAGGCTGACTTTTAGTGACTCTGT AGGACCTTTGATTAAGTTTTCTTCATGTCATCAAAGATTAAAATTTAATTGTTTTCCTTAACAATATGAGCCCAAAGAAT CTATTGATGTTCATTTTCAACGGGGTGCATAAAAATTATTAAGGACCACTACCTTTATAACATTATTTGTGGTTACCAGG CTAATATTATTGAATGTAACTACCCAATTTGAGTGTTTTTTCTTACTAGCTGATTCTAATGTACTTGACAAAAAATTTAG ATCCACCTAAAAGTTTCTTTACCTAATTTAGCGCTTGTGCATTATTTTTACAAACAAATGTAATTTAATGCTACCCCGAG AAAAATGTCATTGAATGTACTTAAATAGGATTCTCAATACTGGAACACTTGTGCAGGTACTGCAGCGAAATTCATGTAGG CCCTGTTGGACATCCGTTCAAGTCGTGTAGAGGCACACAAGCGAACATCCGGAAAGGCCTTCATGAATGGACAAATGCAC ATTTTGAAGACATATTAACACCAGTTGAAGCCTATCACCTCTCTGATCGTCTTGGAAAGCGGATTACTCATGAAGAGCGA TTCTCCATCCCTCGAATTCCAGCTGTGGTTGAGCTCTGCATTCAAGCTGGTGTTGAAATTCCAGAGTATCCCACAAAAAG GAGAAGAAAACCTATAATCCGTATCGGGAGGAAGGAATACGTTGATGCTGATGAAAGTGAATTACCGGATCAAATGCCAG AGAACCCTCCAAAACTATTACTAACTGAAATACCTGATTCAGAAATAGTAGCTCCAGTGGACAAGGAGGAAATAGTCCAG CTTGCTGAGGAAACACTTCAAGCATGGGAACGGATGAGGAAAGGTGCCAAGAGACTAATGGGGATGTACCGCGTGAGAGT CTGCGGATATTGCCCTGAAATTCATGTTGGTCCGCAGGGGCACAAAGCTCAGAACTGTGGAGCTCATAAACACCAACAAC GCAATGGGCAGCATGGTTGGCAGTCTTCAGTGCTCAATGACTTGATCCCGCCAAGGTTTGTGTGGCATGTTCCTGATGTA AACGGACCACCTCTGCAACGAGAGCTGAGGGAGTTTTATGGGCAGGCTCCTGCTGTTGTGGAAATGTGCATTCAGGCTGG TGCTGCATTACCAGAACAGTATAAATCGACCATGCGGCTGGATGTTGGGATCCCATCAACTATGCAAGAAGCTGAAATGG TGGTTTGA
CDS sequence (LotjaGi6g1v0202800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATGAGCCGCAAAAACCATTGTCTTTGTCTGCACCAAAGAATGGATTGCTGGTGAAGAAACTCATACCAACTGC TTATAAAGTGTATAATTCGAGAATCACTTTGATTAACAATCTGAAGAAGCTGCTCAAAGTAGTCCCTGTACACGCTTGTG GGTACTGCAGCGAAATTCATGTAGGCCCTGTTGGACATCCGTTCAAGTCGTGTAGAGGCACACAAGCGAACATCCGGAAA GGCCTTCATGAATGGACAAATGCACATTTTGAAGACATATTAACACCAGTTGAAGCCTATCACCTCTCTGATCGTCTTGG AAAGCGGATTACTCATGAAGAGCGATTCTCCATCCCTCGAATTCCAGCTGTGGTTGAGCTCTGCATTCAAGCTGGTGTTG AAATTCCAGAGTATCCCACAAAAAGGAGAAGAAAACCTATAATCCGTATCGGGAGGAAGGAATACGTTGATGCTGATGAA AGTGAATTACCGGATCAAATGCCAGAGAACCCTCCAAAACTATTACTAACTGAAATACCTGATTCAGAAATAGTAGCTCC AGTGGACAAGGAGGAAATAGTCCAGCTTGCTGAGGAAACACTTCAAGCATGGGAACGGATGAGGAAAGGTGCCAAGAGAC TAATGGGGATGTACCGCGTGAGAGTCTGCGGATATTGCCCTGAAATTCATGTTGGTCCGCAGGGGCACAAAGCTCAGAAC TGTGGAGCTCATAAACACCAACAACGCAATGGGCAGCATGGTTGGCAGTCTTCAGTGCTCAATGACTTGATCCCGCCAAG GTTTGTGTGGCATGTTCCTGATGTAAACGGACCACCTCTGCAACGAGAGCTGAGGGAGTTTTATGGGCAGGCTCCTGCTG TTGTGGAAATGTGCATTCAGGCTGGTGCTGCATTACCAGAACAGTATAAATCGACCATGCGGCTGGATGTTGGGATCCCA TCAACTATGCAAGAAGCTGAAATGGTGGTTTGA
Protein sequence (LotjaGi6g1v0202800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNEPQKPLSLSAPKNGLLVKKLIPTAYKVYNSRITLINNLKKLLKVVPVHACGYCSEIHVGPVGHPFKSCRGTQANIRK GLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQAGVEIPEYPTKRRRKPIIRIGRKEYVDADE SELPDQMPENPPKLLLTEIPDSEIVAPVDKEEIVQLAEETLQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQN CGAHKHQQRNGQHGWQSSVLNDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIP STMQEAEMVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 330 | 329 | 8.0E-200 | – | |
| PANTHER | 2 | 330 | 329 | 8.0E-200 | – | |
| Pfam | 2 | 157 | 156 | 2.0E-76 | ||
| ProSiteProfiles | 52 | 137 | 86 | 30.664 | ||
| Pfam | 191 | 311 | 121 | 2.1E-28 | ||
| Coils | 194 | 214 | 21 | - | – | |
| ProSiteProfiles | 222 | 307 | 86 | 29.915 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0202800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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