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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0203000 |
| Transcript ID | LotjaGi6g1v0203000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT2G24170.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q8RWW1|TMN10_ARATH Transmembrane 9 superfamily member 10; TrEMBL-Plants: tr|A0A151T065|A0A151T065_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi6g1v0203000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50041573..50044157) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTGTTATTGAAGGATTATAGAGCTTAAATTTGCATAACTTCTTGCATGTTTCATTTTCTGAGCTTAGGTTTACACAA TTGACATTCAGAGCTTATAAACTGTTTGAATAAATGCTTAGTTCATCAGAATAGGCGTTTCCGATCATACTACATTCTGT GAATTCGTTAGGAGGGCTAGCCTCACTATGTGGATGTTGCTGACTCGAGATGATTATCCAACATGCAGGATGTATGTATT AGAAGAGGAAAAAATACTACATGTTATGATCTTTGTTCATTGGTGACAGGGGGATCTGCTCAGGGTGAAAGTGAACAAAT TATCTTCTACAAAAACACAGCTTCCTTACTCCTACTATTCACTGCCTTATTGTCGTCCAGATCAGATTGTTGACAGTGCT GAGAATCTTGGCGAAGTTCTTCGGGGCGACCGCATTGAAAACTCTCCTTACACGGTTGGTTAAATTTTGTACACATTTCC CATTCTTCTTCCTTTCATTTAGTATGTTTCAGTTTCAAAAATATTGAAACAATTTTATTCTTCCAGTTCAAAATGAGGGA GCCACAGATGTGCAATGTTGTTTGTCGTCTAACTCTTAATGCAACAACAGCCAAAGAGTTCAAGGAAAAGATAGATGATG AATATCGGGTGAACATGTAAGTCACCACTAATTAATGACCTTAAATTTTACTTAGTTTTTCACCACTTATGTCTTTGTGA CAAATTTATATGTTCAATCCTTTAATTGCTGCAGGATTTTAGACAATCTTCCTTTGGTTGTTCCCCTAAGGCGACCTGAT CAAGAATCTTCCTTAGTGTATCTGCATGGCTTCCTAATTGGTCTTAAAGGACAGTATGCTGGAGTAAGTGCCTCAACATA ATGAACATTTCTTTTTTGGTCATTGATTTGAATTTGAATTCATATTTACCTCTTCTACACAAATGTTGACAGAACAAGGA TGAAAAGCATTTTATCCACAACCATTTAACATTTGTGGTGAAGTATCACAGAGATCCAGTGACAGAGACATCAAGGATCG TAGGCTTTGAGGTTAAACCTTTCAGGTTGAGCTATTTCTTTCCTTCTTTGTTGTATATTATGTTTGTGATAATTTCTTAA ATTTATGGCTAATAGTACATTAGTACTAAGAAATTAAAATTGTTCCTATGAATGCAGTGTAAAGCATGAATATGAAGGTG AATTTGATGAGAACACCCGCTTATCTACATGTGATCCCCATGCAAGGAAGATAGTTTCAGGCTCTGAACCTCCTCAAGAA GTTGAAGACAAGAAGGAAATTCTTTTTACCTATGATGTTGAATTCCAGGTTAATTCCAAAATTCATTAGATTTTAATTAG GCTGGAACAAAGAATTGGATTTTAATGTTGATTTTCTTCCCCCCCTTCTTGTGTAACATCTTTGTAGGAGAGTGATGTGA AGTGGGCATCTCGCTGGGATTCCTATCTTCTAATGGCAGATGACCAAATTCACTGGTTTTCCATTATTAACTCTTTAATG ATTGTGCTTTTCCTATCCGGCATGGTGGCTATGATAATGTTGAGGACACTTTACCGTGACATCTCAAAGTATAATCAATT AGAAACTCAGGAAGAAGCTCAGGAAGAGACAGGGTGGAAACTTGTACATGGAGATGTTTTCAGGCCTCCTCCAAACTCAG ATTTACTGTGTGTATATGTTGGAACAGGTGTTCAGTTTTTTGGGATGATTCTTGTAACCATGTTGTTTGCTGCATTTGGA TTTCTGTCTCCTTCCAATAGAGGAGGGTTGATGACCGCCATGCTCTTGCTCTGGGCCCTTATGGGGCTCTCTGGTGGGTA TTCTTCGGCACGTCTCTATAAGATGTTCAAAGGAACAGAATGGAAGAAAATCACTCTCAAGACAGCAGTCATGTTTCCTG CTATTGCCTTTGGGATATTCTTTGTGCTAAATGCTCTTATCTGGGGTCAGAGATCTTCTGGGGCTGTGCCCTTTGGTACA ATGTTTGCTCTTGTTTTCTTATGGTTTGGCATCTCAGTTCCACTTGTGTTTGTTGGTGGTCACATTGGTTTTAAGAAAAA AGTGATCGAGGATCCTGTGAAGACAAGCAAGATCCCCAGGCAGATACCAGAGCAGCCTTGGTACATGAACTCAGTATTCT CCATTCTAATTGGAGGCATACTTCCCTTCGGCGCCGTCTTCATCGAGCTTTTCTTCATCCTCACGTCTATCTGGTTACAT CAGTTTTATTACATATTTGGGTTCCTGTTCATTGTGTTCATCATCCTCATTGTTACATGTGCTGAGATCACAATAGTTCT CTGCTACTTCCAGCTATGTAGTGAGGACTATAATTGGTGGTGGAGGTCTTACCTGACTTCAGGTTCCTCTGCACTCTATC TTTTCCTGTATGCTGCATTTTACTTCTTCACAAAGCTTGAGATCACAAAACCAGTATCTGGAGTCTTGTACTTTGGGTAC ATGCTGCTTCTTTCATATGGTTTCTTTGTGGTGACTGGTACAATTGGTTTCTATGCATGCTTCTTGTTCACAAGGCTGAT CTATTCTTCTGTAAAAGTTGACTGA
CDS sequence (LotjaGi6g1v0203000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAGCCACAGATGTGCAATGTTGTTTGTCGTCTAACTCTTAATGCAACAACAGCCAAAGAGTTCAAGGAAAAGAT AGATGATGAATATCGGGTGAACATGATTTTAGACAATCTTCCTTTGGTTGTTCCCCTAAGGCGACCTGATCAAGAATCTT CCTTAGTGTATCTGCATGGCTTCCTAATTGGTCTTAAAGGACAGTATGCTGGAAACAAGGATGAAAAGCATTTTATCCAC AACCATTTAACATTTGTGGTGAAGTATCACAGAGATCCAGTGACAGAGACATCAAGGATCGTAGGCTTTGAGGTTAAACC TTTCAGTGTAAAGCATGAATATGAAGGTGAATTTGATGAGAACACCCGCTTATCTACATGTGATCCCCATGCAAGGAAGA TAGTTTCAGGCTCTGAACCTCCTCAAGAAGTTGAAGACAAGAAGGAAATTCTTTTTACCTATGATGTTGAATTCCAGGAG AGTGATGTGAAGTGGGCATCTCGCTGGGATTCCTATCTTCTAATGGCAGATGACCAAATTCACTGGTTTTCCATTATTAA CTCTTTAATGATTGTGCTTTTCCTATCCGGCATGGTGGCTATGATAATGTTGAGGACACTTTACCGTGACATCTCAAAGT ATAATCAATTAGAAACTCAGGAAGAAGCTCAGGAAGAGACAGGGTGGAAACTTGTACATGGAGATGTTTTCAGGCCTCCT CCAAACTCAGATTTACTGTGTGTATATGTTGGAACAGGTGTTCAGTTTTTTGGGATGATTCTTGTAACCATGTTGTTTGC TGCATTTGGATTTCTGTCTCCTTCCAATAGAGGAGGGTTGATGACCGCCATGCTCTTGCTCTGGGCCCTTATGGGGCTCT CTGGTGGGTATTCTTCGGCACGTCTCTATAAGATGTTCAAAGGAACAGAATGGAAGAAAATCACTCTCAAGACAGCAGTC ATGTTTCCTGCTATTGCCTTTGGGATATTCTTTGTGCTAAATGCTCTTATCTGGGGTCAGAGATCTTCTGGGGCTGTGCC CTTTGGTACAATGTTTGCTCTTGTTTTCTTATGGTTTGGCATCTCAGTTCCACTTGTGTTTGTTGGTGGTCACATTGGTT TTAAGAAAAAAGTGATCGAGGATCCTGTGAAGACAAGCAAGATCCCCAGGCAGATACCAGAGCAGCCTTGGTACATGAAC TCAGTATTCTCCATTCTAATTGGAGGCATACTTCCCTTCGGCGCCGTCTTCATCGAGCTTTTCTTCATCCTCACGTCTAT CTGGTTACATCAGTTTTATTACATATTTGGGTTCCTGTTCATTGTGTTCATCATCCTCATTGTTACATGTGCTGAGATCA CAATAGTTCTCTGCTACTTCCAGCTATGTAGTGAGGACTATAATTGGTGGTGGAGGTCTTACCTGACTTCAGGTTCCTCT GCACTCTATCTTTTCCTGTATGCTGCATTTTACTTCTTCACAAAGCTTGAGATCACAAAACCAGTATCTGGAGTCTTGTA CTTTGGGTACATGCTGCTTCTTTCATATGGTTTCTTTGTGGTGACTGGTACAATTGGTTTCTATGCATGCTTCTTGTTCA CAAGGCTGATCTATTCTTCTGTAAAAGTTGACTGA
Protein sequence (LotjaGi6g1v0203000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREPQMCNVVCRLTLNATTAKEFKEKIDDEYRVNMILDNLPLVVPLRRPDQESSLVYLHGFLIGLKGQYAGNKDEKHFIH NHLTFVVKYHRDPVTETSRIVGFEVKPFSVKHEYEGEFDENTRLSTCDPHARKIVSGSEPPQEVEDKKEILFTYDVEFQE SDVKWASRWDSYLLMADDQIHWFSIINSLMIVLFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPP PNSDLLCVYVGTGVQFFGMILVTMLFAAFGFLSPSNRGGLMTAMLLLWALMGLSGGYSSARLYKMFKGTEWKKITLKTAV MFPAIAFGIFFVLNALIWGQRSSGAVPFGTMFALVFLWFGISVPLVFVGGHIGFKKKVIEDPVKTSKIPRQIPEQPWYMN SVFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFIILIVTCAEITIVLCYFQLCSEDYNWWWRSYLTSGSS ALYLFLYAAFYFFTKLEITKPVSGVLYFGYMLLLSYGFFVVTGTIGFYACFLFTRLIYSSVKVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 544 | 544 | 0.0 | ||
| Phobius | 1 | 179 | 179 | - | – | |
| PANTHER | 1 | 544 | 544 | 0.0 | – | |
| Pfam | 1 | 500 | 500 | 7.5E-204 | ||
| Phobius | 180 | 204 | 25 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 205 | 245 | 41 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 246 | 272 | 27 | - | – | |
| Phobius | 273 | 277 | 5 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 278 | 298 | 21 | - | – | |
| Phobius | 299 | 318 | 20 | - | – | |
| Phobius | 319 | 339 | 21 | - | – | |
| TMHMM | 319 | 338 | 20 | - | – | |
| Phobius | 340 | 344 | 5 | - | – | |
| Phobius | 345 | 368 | 24 | - | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 369 | 396 | 28 | - | – | |
| Phobius | 397 | 428 | 32 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 429 | 433 | 5 | - | – | |
| Phobius | 434 | 462 | 29 | - | – | |
| TMHMM | 434 | 456 | 23 | - | – | |
| Phobius | 463 | 473 | 11 | - | – | |
| TMHMM | 469 | 491 | 23 | - | – | |
| Phobius | 474 | 493 | 20 | - | – | |
| Phobius | 494 | 512 | 19 | - | – | |
| TMHMM | 511 | 533 | 23 | - | – | |
| Phobius | 513 | 538 | 26 | - | – | |
| Phobius | 539 | 544 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0203000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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