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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0204200 |
| Transcript ID | LotjaGi6g1v0204200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT5G58000.2 Reticulon family protein; Swiss-Prot: sp|Q56X72|RTNLS_ARATH Reticulon-like protein B21; TrEMBL-Plants: tr|A0A0S3RGT5|A0A0S3RGT5_PHAAN Reticulon-like protein; Found in the gene: LotjaGi6g1v0204200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50152089..50157333) extracted from Lotus japonicus Gifu genome v1.2.
CTCGGTAAGAGTGATTAGAGATTTTAGGGAATCAAATCAATTTCTCTCAAAAGTGTTCATCCCTAATCATTCAACCCCAC CATATTTACCTTCCCTTTTACTTTCCCTCATAATAAAAAAAAACACCTCACTAATGATCATCTAAAATATTCGCTGAATG CCCAATTTCGTCTCAGAAATGTAAGTGTCGGACAAGTTCGACTTTGAAGAAGGAGATGACCCCACCATCCCTAATAGTGT TAAGTATCAAATGTCAGTCAAGTTAGTCCTTATGATCATATAAAACGTCGATCACGAACTGTATTTACTTCTTCTTGAGT CCCTTACATGAATGAAATTCAACCATCACTAGTTAAGAAAGAAAAAGGAAATAAAGAAAAGTGACCAACCACTCTTTCTT CCTAGTTCCTACATCTTCTTCTCATCTCTTTCTCTCTCTCAATTGTTGCTTTACAAAGGGATCCCAATGCTGTTGCACCC CACCAACCGCCATTGCTTCAGACAGAAGCCTCTTATCCATTATCCACCTATGACCCCATCATCAAAGTACTGATTACTAG AAGAAATATAAATTGGAGATGGAAGTGAGTAAAAGAAGAGGAGGAACCAGAGGGAGTGTAGTTGCAGGGTCTGTGTGGGA GAGCAGAATGAAGAGTGATGAAGTTAGAGGAGGATTCAAAGTTTTCAATGCAGATGAAAATGGTGAAGAAGGAGGTGGAA ATGGAGGTTCCAGATTCAGAAGAACCTCAATTGGAGCTGGAGGTGCTACTGTTGCTTCTTCTGGGAAGAGGAAAACTTGG AAACCAGAGAGCTCTGTTTCTGAGGGTTTGGATAAGAACAGGGGGAAAACAGAGATCCAGAAGAATTCTGATGAACAGTG TAAGGAGCTGAGCATTTCTTCTTCTGATGGAAATGGAATCATGAAGAGTCCAATTCAATCCAGAAAGAATGGTGCTTCTT CTGCAGATAAACTTGGGAGGAGTCCAATTCAGCTCAGGAAGCTGAGATCTAATACACAGAAGGGTGTGGCAGAGCTTGGC AGAGAAGGTGCAGGGCAATTGAGGAAATCCAAATCAGATTCAATCAAGAACAATGATGCTTCTGGGTCTGCTAATAATTC AATTCAATTGAGGAAGGTGAAATCTGAGGTGGATCAGGTTCCAGATGAATCAAGCAATGGGGTTGATGGATCGGATGGTG GGTGTGAGACTGAGAAGATTGAAGTTGAGGATGAGGTATTGAATGATGATGATGAAAATTGCAAGGATTTTGATGTGTGC CAAGACAAGGTGATATCAAGCAATTCAGACAATGCAGGTGTGGTCCTAAGTTTACCTGAATTGTCGGTTCAGGTTGGTGG TGATTCAGATGATGTTTCTGTTGATGAAGAAGATGAAGAGTGTGAAGAGGAGGAGATGGAGGAGGAGGTGGTGGTGGAGG ATGAGGAGATTGAGATTGAGATGGAGGAGAGCTTTGATGTGAAGGAAATTAGCATTCCAGAATCCAAGGTTGTGAAGGAA CCAGAAAATAGTAAGGTTTCTGTGAATGAACCAGACAAGAAGATGGTTATTAGTGAACCAGAAAACAAGAAAGTTGTCAA TGAACCAGAACCAAAGAAGGTTGAGAATGAACCAAAACCAAAGAAGAATGTGATAGAATCAGAACCTAAGAAGGTTGTGA GTGCCCACATGCGATTTCATCACAGAAATGAAAGAAAACCAGTTTCTGTCCCAGTTGCATTGAAGCCATCTCCAACAGTT AGAAGGAATTCCACAATTTACCAAAATTTCTCTGAGCCTAAGTCAAGTAAGGACTTTTTAATTGTTCTTTCAATTTTTCT TTGTGCTTTGTCCTAATTTTAACCTGTGTGTGTGGCTGATCTTTATGGTTCAGTTCCAAAAGCAGAAGAATACTATGGTG ATTCAGTTCCACCTTGCTTTCCACAAACTCAAAGCAAACTGCAGAGTCTAGGTAATTCATCTACATTTCATAATTATGAC TTATGAGAGTGAGAAATTTGATGGTAATACTTCATTCAAATTATAGCATTAATTCTTTATATATATATGACTCTCCTCTT CAGTGGATTTAATCATGTGGAGAGATTTTTCAAGATCAACATTTATCTTTGGGATTGGAACATTCCTTATATTCTCATCT TCTTATGCAAAGGATATCAATCTCAGGTTAGAAAATCAAACTAAATGCTTATCTAATTATCAACATATTATATACTTTGG CTGTTGCAGAAGAAACCCCAGAACTGAAGTTTTTCTATCCTTGCTTCTGCAGTCTTATTTCTGTGATATCCTATATAGGC CTTGTCTATCTTGCAGTTATCTTCCTCTATAGAGCCCTAATTTGCAGGTAAGAACCCAAACTATTGAAAAATATGATTAC AAGATTATTATCTTTCTGATTCTCATTTTGGGATCAAATTAACTAGGGGAGTCATAGAAGTAGAGGACTCAAATTATGTG CTGAGAGAAGATGATGCAATATGGATGCTAAGATTGATCCTCCCTTACTTGAATGAATTCTTGTCAAGACTAAAAGCCTT GTTTTCTGGAGATCCTGGCACCACAATAAAGGTGATTTTCTTCTCATTGATTGTACAATTTTGGTAGCCTAAGAAGAACA CCCCCAAACTTAATTTTGGCAATCTTGTACAAAATGCAGCTGGCAGTTCTCCTCTTTGTTTTGGCTAGATGTGGAAGCTT CATAACTATTTGGAAGATGGCCAAATTCGGTAAGTTCCGAACGGGTTAATTAAAGTTTTAACTGTATGAAAAGGATTCAT AGTGTCCTTAAAGTGAGGGTGCCTAAAGCCTATTCCATTCCTAAACAGACTAGTTTTTGGCATTTCAGTTCAGTTCTTTT GAAACAGACAACAAACAAGAAGTTAAAATTTCAATGCAAAGTTTCTTACTTTTTGCATTACTTGCCAGATGATTGAACAG AAAATTGCATCTTGCCCCCCACCACATCCATTATCACATTTCATTTTCCTTGGTTATTTAGTTACTGAGTGTGCTACTTT CAGTTAATTGATTAATTACTGACACATGGTTGTGCTGTGCTCAACTGCTTCAGGCTTCTTTGGTGTTTTTACCGTACCAA AGATCTGCTCTTCCTATTCTGCACAGTTAACTGCATATGGTATTTCCCTGATTTTGATGATGCTTTTTTTTTCCTAGCTA TGTAATGCCAGAGCTATGACATATACCTTTAAGCTTGTAAACAAACACAGTACAGTTGAAGTGTGTAGAGGTGCTAAATG CAGCTTAAGTATGAGGGAAACGTTTGACTAGTGCTTGCATAGGCCCACAATAGCTGATCGTGCATACAATATTGATGCAA GTTAGAAACGGCTCCTAAGTTTTCTGCACATATGGCTTTATTTTATTTCATTTTATCTTGTGGGATCTCCAATGCATCAT TATGTAGATCTAGCAGTGATTATAATTATAAACAAAGATTAATAGTTTAATATGGTTCAATTATACCTTCTCCATCGACA TAATCAAACTCTAAATCTAGAATCTGCTTTGAGATTTTGTCTCTATGGATTTTTAATGCTTGATGAAGGTAACTGAGACA TAATTAAATGCATCACATGGGTGAGAGCATCTCTTGTGTTTCTTTATTTCTGACATTTATGCGCTCGTTACTTACTAGTA TTGGATCTCTTCATATCACAGTATAAGGGAACACAATTGTGGGATCATAACATAATGGTCCTGCACATCTCTTGTGGTCC CAATCCCAAAGTCCCACAAAGTCCAAACTTAAGAAATTGTGTGTTCCTCTTCCTTATCTGTTACCATGTCCTAGAAGGCT AAAATCTAATCCTTCTCTATATGGGCATCATTACTTTATGTCATGGTGTGAGTAAAACACATAAGTATAAGCGAATGACA CTACATCTTTCACTCAAAATCCTAAATTGCACTTTTTTTTTGTTTATGACATGTAGCAAATTTTTGGATTCGTCGATTCC GGGATGCATGGGATTCATGTACTCACAAGAAAGCCGTAGCTCTTGGAATCTTTGGACTTGTATGGAATTTGTCATCAGTT GTTGCTCGCATTTGGGCAGGTAAGTGCTGCAACTTCAAATCAATTTGATTAATTTTGAGTCTTGGAATTAGACTTAATTA AATATTTTCTGTTTGATATATGTAACATTTATTTGTAGTAGCTTTGATTGATTGATATGTTGAGCCTTGCACATACTCAC AGCAATGAATGGTGGTGTTATTTTGCAGTCTTTGTGCTATTTGTGGCATTCAGATATTATCAACAACACTATCTGGTGAG AGATGAGTGTGTGGAGGATGAAGCAGAATGTGATGAAACATGGCAAGAACCAGTTGGAGTTAGACAGAAACAAGGACGCG CAGCAAACATTGTTGGTACCAATAAAGTAAAGAAAGGATTCTAAAGGGGTGTGTTGATGGTGGTGGTACCACATTTTTAG CAGGCTTCCCCAGTTGCATGCACCCTGCCATGTCCCTCCCTTTAAAGCCTTTTATTTTTTTTCTTTTCACATTAAAGTGT CTCTCTTTCTCTCTATATATATAGTTCTCTGCTGTAAATTTTCTTTAGTTATCATAAAGGTAAATTTAGTTTAATTAACA AATCTGTCAGGGTTCAATAGGAAAGGGGAATAAGGGTTTGGACTTTTGTGTTCTTATAATTAGCATTTAGTTATAGTAAT TTGTTTTAATCATGGTGCTAATTCTCAAACTTGGTTGTCTGTTTCCATCCATTGTAGCATCACAAAGGGGAAAGATAATG AAACGGTTGAAAGCAAGTAGAAACAAGGTTGGCAAACACCAAATGAAAGCCAAATTAAACACTTGAGTTGAAATAAATAA TTGTAATTAAGAACTTTATTTGGTATTGATTGAGAACTTTGATGAGCAAAGCATAAGGTGAGTGTAATAGACTAATCGAG TAATCGGGGTCATTCTTAAAGTGCGATACACCATAATTTTTTTATTTTAAAAAATGTGTGTTTGGATTCTAGTTGAATTA ATTTAAAAGCATTTTTCATCTCAATTCATAAGAATTTCGTTCATTTTTTATCTCAAATATCTTGAAGGGAGCACATAAAA AAAACTAAAGGATGGAAGGACGGAATGAAAGTTGTGAAGAAATGGGCTCATGGGAGCCTTTCTTGGGCCCTATAGATGAT CTTCAAACCTAGCAGGCTAAGGAGGGCCATAATACATATAGGCCT
CDS sequence (LotjaGi6g1v0204200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTGAGTAAAAGAAGAGGAGGAACCAGAGGGAGTGTAGTTGCAGGGTCTGTGTGGGAGAGCAGAATGAAGAGTGA TGAAGTTAGAGGAGGATTCAAAGTTTTCAATGCAGATGAAAATGGTGAAGAAGGAGGTGGAAATGGAGGTTCCAGATTCA GAAGAACCTCAATTGGAGCTGGAGGTGCTACTGTTGCTTCTTCTGGGAAGAGGAAAACTTGGAAACCAGAGAGCTCTGTT TCTGAGGGTTTGGATAAGAACAGGGGGAAAACAGAGATCCAGAAGAATTCTGATGAACAGTGTAAGGAGCTGAGCATTTC TTCTTCTGATGGAAATGGAATCATGAAGAGTCCAATTCAATCCAGAAAGAATGGTGCTTCTTCTGCAGATAAACTTGGGA GGAGTCCAATTCAGCTCAGGAAGCTGAGATCTAATACACAGAAGGGTGTGGCAGAGCTTGGCAGAGAAGGTGCAGGGCAA TTGAGGAAATCCAAATCAGATTCAATCAAGAACAATGATGCTTCTGGGTCTGCTAATAATTCAATTCAATTGAGGAAGGT GAAATCTGAGGTGGATCAGGTTCCAGATGAATCAAGCAATGGGGTTGATGGATCGGATGGTGGGTGTGAGACTGAGAAGA TTGAAGTTGAGGATGAGGTATTGAATGATGATGATGAAAATTGCAAGGATTTTGATGTGTGCCAAGACAAGGTGATATCA AGCAATTCAGACAATGCAGGTGTGGTCCTAAGTTTACCTGAATTGTCGGTTCAGGTTGGTGGTGATTCAGATGATGTTTC TGTTGATGAAGAAGATGAAGAGTGTGAAGAGGAGGAGATGGAGGAGGAGGTGGTGGTGGAGGATGAGGAGATTGAGATTG AGATGGAGGAGAGCTTTGATGTGAAGGAAATTAGCATTCCAGAATCCAAGGTTGTGAAGGAACCAGAAAATAGTAAGGTT TCTGTGAATGAACCAGACAAGAAGATGGTTATTAGTGAACCAGAAAACAAGAAAGTTGTCAATGAACCAGAACCAAAGAA GGTTGAGAATGAACCAAAACCAAAGAAGAATGTGATAGAATCAGAACCTAAGAAGGTTGTGAGTGCCCACATGCGATTTC ATCACAGAAATGAAAGAAAACCAGTTTCTGTCCCAGTTGCATTGAAGCCATCTCCAACAGTTAGAAGGAATTCCACAATT TACCAAAATTTCTCTGAGCCTAAGTCAATTCCAAAAGCAGAAGAATACTATGGTGATTCAGTTCCACCTTGCTTTCCACA AACTCAAAGCAAACTGCAGAGTCTAGTGGATTTAATCATGTGGAGAGATTTTTCAAGATCAACATTTATCTTTGGGATTG GAACATTCCTTATATTCTCATCTTCTTATGCAAAGGATATCAATCTCAGTCTTATTTCTGTGATATCCTATATAGGCCTT GTCTATCTTGCAGTTATCTTCCTCTATAGAGCCCTAATTTGCAGGGGAGTCATAGAAGTAGAGGACTCAAATTATGTGCT GAGAGAAGATGATGCAATATGGATGCTAAGATTGATCCTCCCTTACTTGAATGAATTCTTGTCAAGACTAAAAGCCTTGT TTTCTGGAGATCCTGGCACCACAATAAAGCTGGCAGTTCTCCTCTTTGTTTTGGCTAGATGTGGAAGCTTCATAACTATT TGGAAGATGGCCAAATTCGGCTTCTTTGGTGTTTTTACCGTACCAAAGATCTGCTCTTCCTATTCTGCACAGTTAACTGC ATATGCAAATTTTTGGATTCGTCGATTCCGGGATGCATGGGATTCATGTACTCACAAGAAAGCCGTAGCTCTTGGAATCT TTGGACTTGTATGGAATTTGTCATCAGTTGTTGCTCGCATTTGGGCAGTCTTTGTGCTATTTGTGGCATTCAGATATTAT CAACAACACTATCTGGTGAGAGATGAGTGTGTGGAGGATGAAGCAGAATGTGATGAAACATGGCAAGAACCAGTTGGAGT TAGACAGAAACAAGGACGCGCAGCAAACATTGTTGGTACCAATAAAGTAAAGAAAGGATTCTAA
Protein sequence (LotjaGi6g1v0204200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSKRRGGTRGSVVAGSVWESRMKSDEVRGGFKVFNADENGEEGGGNGGSRFRRTSIGAGGATVASSGKRKTWKPESSV SEGLDKNRGKTEIQKNSDEQCKELSISSSDGNGIMKSPIQSRKNGASSADKLGRSPIQLRKLRSNTQKGVAELGREGAGQ LRKSKSDSIKNNDASGSANNSIQLRKVKSEVDQVPDESSNGVDGSDGGCETEKIEVEDEVLNDDDENCKDFDVCQDKVIS SNSDNAGVVLSLPELSVQVGGDSDDVSVDEEDEECEEEEMEEEVVVEDEEIEIEMEESFDVKEISIPESKVVKEPENSKV SVNEPDKKMVISEPENKKVVNEPEPKKVENEPKPKKNVIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTI YQNFSEPKSIPKAEEYYGDSVPPCFPQTQSKLQSLVDLIMWRDFSRSTFIFGIGTFLIFSSSYAKDINLSLISVISYIGL VYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGSFITI WKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYY QQHYLVRDECVEDEAECDETWQEPVGVRQKQGRAANIVGTNKVKKGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 686 | 686 | 2.5E-197 | – | |
| PANTHER | 1 | 686 | 686 | 2.5E-197 | – | |
| Phobius | 1 | 443 | 443 | - | – | |
| MobiDBLite | 36 | 213 | 178 | - | – | |
| MobiDBLite | 75 | 99 | 25 | - | – | |
| MobiDBLite | 100 | 128 | 29 | - | – | |
| MobiDBLite | 170 | 187 | 18 | - | – | |
| MobiDBLite | 258 | 287 | 30 | - | – | |
| MobiDBLite | 264 | 287 | 24 | - | – | |
| Coils | 270 | 297 | 28 | - | – | |
| MobiDBLite | 307 | 356 | 50 | - | – | |
| ProSiteProfiles | 435 | 598 | 164 | 12.965 | ||
| Pfam | 436 | 590 | 155 | 7.4E-24 | ||
| Phobius | 444 | 464 | 21 | - | – | |
| TMHMM | 447 | 464 | 18 | - | – | |
| Phobius | 465 | 470 | 6 | - | – | |
| TMHMM | 471 | 493 | 23 | - | – | |
| Phobius | 471 | 492 | 22 | - | – | |
| Phobius | 493 | 511 | 19 | - | – | |
| Phobius | 512 | 530 | 19 | - | – | |
| Phobius | 531 | 541 | 11 | - | – | |
| TMHMM | 539 | 561 | 23 | - | – | |
| Phobius | 542 | 561 | 20 | - | – | |
| Phobius | 562 | 615 | 54 | - | – | |
| TMHMM | 566 | 588 | 23 | - | – | |
| TMHMM | 608 | 630 | 23 | - | – | |
| Phobius | 616 | 637 | 22 | - | – | |
| Phobius | 638 | 687 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0204200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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