Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0204600.2

Overview

Field Value
Gene ID LotjaGi6g1v0204600
Transcript ID LotjaGi6g1v0204600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT4G33680.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q10MQ2|DAPAT_ORYSJ Probable LL-diaminopimelate aminotransferase, chloroplastic; TrEMBL-Plants: tr|G7JTY4|G7JTY4_MEDTR LL-diaminopimelate aminotransferase; Found in the gene: LotjaGi6g1v0204600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:50188631..50194845) extracted from Lotus japonicus Gifu genome v1.2.

TTGAATTTGATGATGATTTGTGATTCTTCTTGTGATTGGATACTGGATAGTATTTAAATAGGGTGCATATGCTGTTCAGC TGGTTCCATTTCTGGTTTTTGCAATGTTTTATTTGACAAGTTCATCAAATTAAATTATTGTGTAGTCATTTCTGAGTTTT TTAGTTGTCTTGTTGATTTTGTGTTGGAGGGGTTGCTGCAGTGGTTGTGTTGGAAAAGTGCTAGCAAGTTGTTCTATTGA GTAGATATTTATTAGAGATGTGATTTTTTTAGTAAGATAACATTTTATTTTTTCGTGTTGCAGCCTACAAGACAAAGGTC TCTCGCAATGCAAATATGGGTAAACTTCAAGCTGGCTATCTCTTTCCTGAGGTAAGTGACGCTGCTTCATCTTTCTGCTT TTGATCCTGTTCTTCTACATTTATCAAATAAAAAATGAGCCAGTGTTTGATATGATTGATAAGCTTTTAAACATTTTAAC CACTGCATTGTTTTTATAATCAATGTTCTCTTTTAATATTGACCTCAAGTGACCTCGGGTAAGTCAAGTAATACATACTT CATCAGAACTAATGTTTTTTTTTGGAGACTTGCATGTAATATTAACAAAAGAGGCCTTTGATCAACAACTAATCATGTGA TTTTTAAAAGAAAAGATTTATGATTAAATGTTTTAAGTATCCGTAAAGGGAATGTGATGTTGCAACAAAGCATTTTACTC TTGAAATTTGGTTATCTTGTCTGCTAAAGATACAGAAGAAAAGATGGAAAAATATGTATCATTTTAGTTGTTCAATCTTC TGTTTCTTTATATATGTGCATATCCTTCTCTTTCTCACTCACCAAGCTTGAGGTTACATGATCTATGAATGCTTTTCTGC CTTTCTTTTTTCTGAGTTCTGACCATTTTTTGTTTTGTAACTTTATTACATAAAATAGGTTGCTAGAAGAAGGAATGGGC ACTTGCTTACATACCCTGATGCAAAAATAATAAGCCTTGGAATTGGTGATACCACTGAACCCATTCCTGAAGTCATAACT TCTGCAATGGCAAAGGTAGAACTCTGGCATGAGTTTGGCTGATATATGATATAACTTTCATGACAATAGAATGTGGTCTA TTTTGCCAGTATTTGTCATTTTCTGTTGACGTTGGAGTTCTATGGTCATTAATTATTGGTGAATTTCATAATAGTACCAT GATAGGCATCGAACACAATTACAATCAAGTTAAGGAAGTGTTACCATTCATTCTCCCACCCATTCTCTCCCTACTTCCCA CGTACTGCCCTCGGCAGTAAGTTACGTTCTCTTCCTCTTAGTTATGAATTATGATAAGGTGCACCGCACCTCTTTGTTCT CCTGACATATACCTTCAAGATAGCCGATTTCTTTGGGCCCGTATCAATCAACATATCATACGTTGATTTTTTTTCAGTAG CTTTAGTGTTATTATCTGTACAACTCTTTTAATGTCTTGTTGAATCTATTTAAGGTTGTCTTTGATTGATCATAACTCTG ATATTTTGTAGGTATGTATATTTTTTTGAAAAACTGTTAATCATAAATAATATATTATTGACTCAATTAAATAACACTAA TGCTTCACCTGTTGCTAACTGAGCATTTGTAAATGTTGTTTTTTCCCTTTTAATCAGAGATCACAAGCATTGTCAACCAT AGAAGGATATAGTGGTTATGGAGCTGAACAAGGTGAAAAGGTATGTCAATTGATGTCTATGAGAGGTTTCGTCTGTTTTT CCATTTTTCATTCTTATATCTTTCTACAATTTACTGTTCTCCCTCACATAGCAAATGTAATGCCAGACCTGCTATACAGT TTTCCATTGCCCTTCCCCCTTCCCTGATAGCTTATTTCTTTTTTTGTGGATGAACAACTACTGCTATTGCCTAGTTTATT TTCGTAAGTGGAAAATAAAAAGGTTTTTTTTTTTTATTATTTTGAGTGAGTCTTTTCTTGGTCCTTGAGGCATTTCAGGA AAACATTTTTAATGTTCTTTTACTTGACTCCACTTATTCTGTAAGTTTGTCTCTGTTGTGCACTATATGCCTTTATTCTT ACTGAAGTTTTACAGGAAGATAAATTCATGATGTGTAAGAAATTTGTGTGTAAATTATTTTCATGTAAACTCAAGTATTT TTTTTTTTATGATCTGTTGTGCAATATATGCCTTGCTTTCCACGTGTAGCTTTCTTTACCATTTTATGGTTTGATCTCTT TAATTGATATTGACTTCCACGTGATTACAATAAAACATTGTTTTTGTAATTCTTAAAAAAATTGTCTTTGTAATATGGGG TGTCAGCTGCCAAAGTTAAATCCCTGCTATTGCCTTTGATGTTTACCTTTGGAAGAAATGTAATTAGATGAAGATGCTAA GAGTTTGAACATTGAAGCATAGACTTACCTTATGTGTGTGTGTGTGTGTCATTTTGAAGCCTAAGTGCGTAATTAATTTC ATTACCTACTTCCTTTTACGTAAGTTTATGATACTTGTAAGATTGAGAGACATCCATAATCTATGCAGCCATTAAGAAGT GCAATTGCTTCGACATTCTACGGTGATCTTGGTATAGAAGAAGATGATATATTTGTCTCAGATGGAGCTAAGTGCGACAT ATCTCGCCTCCAGGTTCATTTTGTATCTTTTAAATATATTATGTCCTACTTAAATTATCTATTCTGCCTATTGTGTTGTT TACCTGGTCATTTACTGCTGCTGGATTTCAAAAACTATCCTTTATGGGGGTAGGGGAGGGAGGAGTGACACAATAGTTGG GTGTTATCCACAATTAACAAGTTCTTCCTGAACTTAACTAATTATTTCTTTTATTTTCTTTGGCAGATTGTCTTTGGGTC AAATGTGAAAATGGCTGTGCAAGACCCATCATACCCGGTAATTCATATCTATGTGGTTGTTTAAAATGATATTCTCATAA CTCATAAGTTGCTTAACCATTCATTCATGTTTCATTATGCCAAATGGAGACTTTGGTTCTGTTCCAGTTGTCCGCCTTAT TGATTTACTGTGTGATACGCGCTCCTTGATGCAATAGAAAATACATGGTTCTTTGAGTCTTAGGTAGTGTTTGGCCCAGC TTCTTTTTAACTTTTAAGTTACTTTTAAGCCAAAGTTGGGCCAAACACAATTTTAAATAAGATCTTAAATAATAAGTAAC TTATTTTTTTACGAAGAAATATAAAAAAAGTAACTTTTAAGGAAAAAGTTAAATAGGGGGAGCTTTTTTCTAATAAGCTG TTAAGAGTGTCAAGGTGCTGTTACAAATTGGAGAGAGAGCGTGAGTTTTGGGATATTAATTACGAACATTTTGGAATTGT GGGAATCCTGGCTGCTTCTTTCTTTTTTTATATAGAACAGAGATCATTTTTTTAACGCACAGAACAGAAATCATAGTCAT AGTTAACACAATAAAAACAATCCTACATGGTCCTTGATAAACAAAGTAGAAACCATTGACATGATCTTCCCATGGAATGA AGAAAAAGAAACCATTGACATGGATTTTTTACGAATTTGTGACTTATAATTTATTGGAGATATAAATTATAAGAGCTATA TATATATATATATATATATATATATATATATATATATATGTATGTAAAACTTTCAAAAATATTTTGCCAAACAGTTTTTA ATCTAAAAGTAACTTTTAAGCTATAAAAAAAAATGAAAACTGACAAACAACTTCTGTCTTTTATTTAAAGCTCTTTTTTT TAGCTTAAACTTAAAAGTAACTTAAAAGCTGTAAAAAAGGTGGGTCAAACGCTACTTATATTTTGTTTATACAAGGTATA AGAGGACTTGAAAGAATATTGCTCATTCTAATATTTGAAGAAAGGCTTCTTCGGTATTTGATTGACAAACCTTCCTTCGG TATTTGATTGACAAACCTTGAATGGAAAGATTATCCATTACTGGAGAAAGTGACATATGGACATATGCAAACACATGAAA AACTTCAATTAACTTCTTTGATCAATGTTTCAACTTTGATCATAATTTCATTTATTTTAATTTTTTTATCGAAAGTATAA CATCTAAGGTTATCTATCTTGACCATGGTAGTCAAAATCGTGATTATAATCATATATATGCTTCAGCTTCAGGGGGAGTG TTAATAGGTTAAGTGAGGGGACACCATAGTTTTATTCTGCTTAAAGTTACTGGCCTTTTGTCTATAGTAGCTGTTCTCTG TGAATAATGCAGCTTTTATATGCAGGCCTATGTAGACTCAAGTGTGATTATGGGCCAGACTGGCCCCTTCCAGAAGCCTG TTCAGAAGTTTGCAAACATCGAATACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGATTTGTCTTCCATTTCTCGA CCAGATATAATTTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCTGCAACAAGGGAGCAACTTACCCATCTAGTTCA GTATGCTAAGGACAATGGGTCTATAATAGTCTATGATTCAGCATATGCAATGTATATATCTGGTGACAACCCGCACTCCA TCTTTGAAATTCCTGGAGCCAAAGAGGTCAGTGAGTCTGTAACTGATAATTTGATGTTTAAGGGATGGTCTTTATTTTCA CTCTTACTTATGACTAGGATTCTTATTTCTTACATTAATTAACTGTGCTTAGTTTTTAATGGAATGCATCTGGCGGATTC TTCTTAATTACATATTATTTGCCAATCTACTTGAGTACATGTGGCTTGTGCTAAAACTTAAAATTAACATGCGTGAATGT CATTGACTATAAATTTGTTTTGCAACAAGTTCCATACCTTATTGATTTGGTTAATGCAACAGTCACTGGAAATCTCTCAT TCATGAGTATTTTTGCTTTGACCTAGCTGGCAAATGTTTTACTTTGGACTATGAATTATTTCCATATTGTCATGTCAAAC TCTTCTAGTTCTGGCTTCCTTCTAGTTTAGGAGGACTGGCTTTGTCAGTTTGCCAGACACCGAAGATTTTGGTGACCGTA AATGTCTACTTATGCCAGTGATATATACTTTTATTCAAAAGATACACTTTGTAGTTTGGATGACTAATCTAGTAATATTT CACATACCACTATAAGGAACTTTAACCAAGTAGAATTTCCAAAATTTAGCAATTCAGTGAGGAATCTGCTTTTGATGCGA AGTGACCGTGGATTTCTGTTACATATCAATGTGTGTGACTGCTTATGGCCTATTGCAGGTTGCTATAGAGACTTCATCAT TTAGCAAGTATGCTGGATTTACTGGAGTCAGACTGGGTTGGACTGTTGTTCCAAAACAGTTACTGTTTTCTGATGGATTT CCTGTTGCCAAGGACTTCAACCGTATTGTATGTACTTGTTTCAATGGCGCATCAAATATTTCCCAGGCAGGTGGTCTGGC TTTCCTTTCACCAGAAGGCCTTAAGGTTAGTTACTTTGTTTTATTATTAAAGTTCATGAAAAATAGAAATTTCCAATTTT CCATATTGTTAATAAAGATTTCTCTTATCCTGCCTCTTCCTCCTACCACTAGATGCTTCTGTGGCTTCTATTATTATGGC ATTATTAACTATTAACTGTGTGGTTGAATTTCCAGTGAATTTAACGCTGGTCCATGTTGAATTCCTGTCAATGTGGGAAA TTCTTGCTTCTCTATTGATACCTTGAGATGCGTGAAATCACGTTTGCATTTGCATTAACACAACCAAAAATACCCTAAAC TTCACATGCATTTGCTCTATTACACCAAATTCTTCAGCTAATAATTTTTTGTAGGCTATGAGGTGGTTTTCTTTGATCAT TTAGAACAAATGGAAAAACGTATTTGAAATATATTTGTCAAAAAATGAGTTACATGATAGGATTGCTGCAATTGAGTGCA GGCTATGCGAGATGTTATTGGATTCTACAAAGAAAACACTAGCATAATAGTGGACACATTTGACTCTCTTGGGTTTAAGG TCTATGGAGGGAAATCTGCACCCTATGTGTGGGTCCATTTCCCGGGGAGAAACTCATGGGATGTATTCAGTGAGATTCTT GAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTATCAGGGTTAGCGCCTTCGG TCACAGGGAGAATGTCTTGGAGGCCTGCAGAAGATTCAAGCAACTATACAAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0204600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGATTTGTGATTCTTCTTGTGATTGGATACTGGATACCTACAAGACAAAGGTCTCTCGCAATGCAAATATGGGTAA ACTTCAAGCTGGCTATCTCTTTCCTGAGGTTGCTAGAAGAAGGAATGGGCACTTGCTTACATACCCTGATGCAAAAATAA TAAGCCTTGGAATTGGTGATACCACTGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAGATCACAAGCATTG TCAACCATAGAAGGATATAGTGGTTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCGACATTCTA CGGTGATCTTGGTATAGAAGAAGATGATATATTTGTCTCAGATGGAGCTAAGTGCGACATATCTCGCCTCCAGATTGTCT TTGGGTCAAATGTGAAAATGGCTGTGCAAGACCCATCATACCCGGCCTATGTAGACTCAAGTGTGATTATGGGCCAGACT GGCCCCTTCCAGAAGCCTGTTCAGAAGTTTGCAAACATCGAATACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGA TTTGTCTTCCATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCTGCAACAAGGGAGC AACTTACCCATCTAGTTCAGTATGCTAAGGACAATGGGTCTATAATAGTCTATGATTCAGCATATGCAATGTATATATCT GGTGACAACCCGCACTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCTATAGAGACTTCATCATTTAGCAAGTATGC TGGATTTACTGGAGTCAGACTGGGTTGGACTGTTGTTCCAAAACAGTTACTGTTTTCTGATGGATTTCCTGTTGCCAAGG ACTTCAACCGTATTGTATGTACTTGTTTCAATGGCGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTTCCTTTCACCA GAAGGCCTTAAGGCTATGCGAGATGTTATTGGATTCTACAAAGAAAACACTAGCATAATAGTGGACACATTTGACTCTCT TGGGTTTAAGGTCTATGGAGGGAAATCTGCACCCTATGTGTGGGTCCATTTCCCGGGGAGAAACTCATGGGATGTATTCA GTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTATCAGGGTT AGCGCCTTCGGTCACAGGGAGAATGTCTTGGAGGCCTGCAGAAGATTCAAGCAACTATACAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0204600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMICDSSCDWILDTYKTKVSRNANMGKLQAGYLFPEVARRRNGHLLTYPDAKIISLGIGDTTEPIPEVITSAMAKRSQAL STIEGYSGYGAEQGEKPLRSAIASTFYGDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQT GPFQKPVQKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTHLVQYAKDNGSIIVYDSAYAMYIS GDNPHSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAFLSP EGLKAMRDVIGFYKENTSIIVDTFDSLGFKVYGGKSAPYVWVHFPGRNSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV SAFGHRENVLEACRRFKQLYK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43144:SF1
14 421 408 1.9E-250 –
PANTHER
PTHR43144
14 421 408 1.9E-250
IPR019942
TIGRFAM
TIGR03542
20 418 399 2.7E-153
IPR019942
Hamap
MF_01642
20 419 400 46.146
IPR019942
SUPERFAMILY
SSF53383
32 416 385 2.39E-72
IPR015424
Gene3D
G3DSA:3.90.1150.10
36 415 380 1.6E-137
IPR015422
Pfam
PF00155
52 416 365 2.0E-34
IPR004839
CDD
cd00609
54 418 365 5.321E-71 –
Gene3D
G3DSA:3.40.640.10
63 318 256 1.6E-137
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0204600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…