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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0205200 |
| Transcript ID | LotjaGi6g1v0205200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin-like metallo-phosphoesterase superfamily protein; TAIR: AT4G30993.2 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9SCX8|PPA17_ARATH Purple acid phosphatase 17; TrEMBL-Plants: tr|A0A072V8E7|A0A072V8E7_MEDTR Calcineurin-like metallo-phosphoesterase superfamily protein; Found in the gene: LotjaGi6g1v0205200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50238224..50241503) extracted from Lotus japonicus Gifu genome v1.2.
TAAAACTATTCCATTCGATAATCTCGTTCCGCTTCACTCAATCATTTATCATTGCTCTTCCAATGAACATAACACAGACA CAAGAATAAGTCTTATATGGTAATCACTAATCAGGTAAAAGACTGTGTCAAGATATTCCAACAAAGCGACAAGGCAGTAC TGGATAACATGGATGGAATCAAATTTAATGTCAGCAATCACATGTCCAACGTGGGCAAATATAGATCATACAATTCTAGT GTCATCATAATTCAGATCTAACATCAATCAGCGAATAGGTTGTTGGTTCTTACATCGTATGTTGTTTGGATTACAAGGTG ATCCAAATGGAGAAAACATCTTGGGCATGCACTGTTATCATCCAAGTGTGTCTCTGCTTTGCTTTCTACATAGCTCTCAA CTTGGGTCAACCTCAGAAATTGGTCAAAACAAATGCAAGTGGCCATGAACCTTTTGATCTCTACTTCATCAGTGTCAGAG GGGGTTTCAGACCCCATTTCCAGCAATTCCATCTTCTCAAGCAGGTAGATTATTAGCTCTCTCTTCACTAAGCTAGCATT TTAACAGTTTGTTGGATGTTTTTCATGATTTTCTTCTTAATGGGTGTTTGTCAATGGTGGATTTTCATGTTCAACCCAAT TTTGTTTATGCTTTGGAAATTTGAAGTTGCATTGTTCCAACATTTTCTTGCTTCCCTTTTATTTGTTTGGAAGGAATGGC CCAAGACAGGATGAATGAAGCATATATTTGGATCTTTTTCTGTTTTTCTTTTCCTTAATTAACATGCTTTAGTTTCTTCA GTGTACTTGGTTGGTTGCTTTAACTTTTTTTCATTCTGCTCACCTTTCTGACCTCTCTCTTACTTCCTGGTGTTCATGAA GATGGAGAAGGTGGCCAGAATTTACAAGGCAAGTTTTGTTGTGAGCAGCAGTGAGCTTGGGGAAGATGATCCTCTCATGC AGAATGTATGTTCTTTTGTTTATATAATTTTTTTCTGTGACCTTTCTAGCTTTTTGCTGTTTGTAGAAATAGATTTCTTA TGTAGTGGCATGCAATTTGAGAGGTTTCTTCAGATTTCAAATTGCAAATGCTGTCGCGGTTGTGTGATAAGGTCCATAAT TTGAAACTATGGTTATGGTTGCTTTTGGTTTTATTGCAATGGCAAATTGTTTCATTGTTTTCAATTAAGAGTCATGGTAT ATTTCTTTTACAGGCTACTCAACATTTTCCATCATTGAGAATTCCCTGGTATACAATCCTCTGAGCAATCTGTTATCTGT ATTGGTACATATGACACAGAAATTTGTGGCTGCAGAGTCTTGAATTCCAATGTATTGTTTGAGAAAATCACCATCCTTTG TCAATTCTGCTAAATGGGATAGTTATGAAGAGAGTTAGTGTGCAGGTACAACACCTACACTACTGCAGCCTCAAAATCAG AAGGACAAGAAGCGGTTTGCTTTGAAAAGAAGATCAAGATATCTAATGGGAAAACCTTAGACGTTATCGGTGTGGATACT CAATTACTGCAAGTATGTATTTATGTGTTCATAAATATATTTCTATGGTTGCTGAACCTATCATCAGATATCATTAAGGC ATTTGTTCATAGCCACTTTTACTTTGTCCTATCATTGATATAGACTTATAATAGACTTTAGTATCTTTCTCTAATTTGTT TCTTTTCTGATGCTGAAGGACTCTGTCTTAAGGGGATCATTAAGTGGCAATAGAAATAATAAATTGCATTTGCTGATCAG AACATTGGAAGCAAACAGTAGTAACTGGTATGATCACTATGGAATCAAACTTCCTTTTCCAACCCAATTTTTTCAAAATC TGACAAGATTATGCTAAAAACATGATGATTTCTCAACAACCTGCATTATTTCAAGTTCATGTGACAATACAAATAATTCC AGTTTTTGATAAACACTTTGTCTCTTTGGTAACTTCAGGCGCATTGTTGTTGGATACCAACCACTTATCATCTGTGGAGA GAATAATAAGGAGCAAATGAAGAAGAAGCAAGTTTTTGAGTATTTTCACCGTATGTTTCTGAAATTTGCAGTAGTAAGTG CAAAGCAGCTATTATGTTTGGAAAATTTTCAAATGCTAAAGTTTTGACATGTTAACTACACTGACTCTGATATGACATTC ATCCTTGTATTTACACCTCAGAATGTATACCTGAGTGGACAGGATTGCACTAACCATGGCAATGATGGTAGTGTTGCTTA CATAGGGAACCCTGGCCTAGTTGAGAAAGAGCCTTATTCAATTTTTCTAAATGGAAACTCTCACTATAGCAGGTAAATAT TCACTCAGTCCCAGTTTTTGTGCTTTACTCAACATCTGTGACCAAAACTCATGAATCCTTCCTTTATATTTGAATCCTGC TAGAGAATTGGCTAATGGATTCCTTCTTCACCGAGTCAGCTCAATGCAAATTGTGGGTAACAAACTGTGCGGTTATCATC TGTGATTTTTTTTATCAAAAGTTGATGGATTTGGATATTTATTGCCTCATTGCTCTTATTCCAAATTGTTTTTTATATAT ATTTATTCTCGGCACATCAAAATGAATGTTGCATGAAATTTTTAAGTCATATTATGCATGGCATAATTGGTTAAATACAA CGGATCTTAGTAATCATGCCAAATGTCTAAATTTACTCTTCATATGATCTTCCCATTACAGGTAACCTACTATATAAATT TAGTTGGTGAAGTTGCTTTCAAAAATGTGCTCCAACAGAAGGGTACAGATGTTATGTAAATATTTCCAGTTGGAGATCCA ATTATTCTTTCTGGCATTGGTGCTTCTGTGCTGCCTCAAGTTCCAATTTCATCTGAAGTTTTCCCCAGCCTGCTTCCCAA ACAAGAACAAGTTTTTCATTTCAAATCCATTTTTGACAACTAAGTCTATATTTTGGAATGTATTGTAATGTTTAAGAACT TGACTATGTTCAAGATTCATGTCCAGCAGCAGGATTTGTAGTTTATTCCTTCCAAGTATTGTTATGATCTTGAGAAGGTA TCTTAATTGTCTAATGCAAATACACAGCTCTCTGTGCAGACAACATTTTCACAAAATAAAGTTGCAGCCACTTGTAACTA GAAAGGGCAAGATCAAAGTAAAGAGTTGCTCTTGCAATCAGTGTACTAAATTAGTAATTAGTAAGTAATTCATTACTTTA AAATATATTAATATAAAATAAAAATGTGTGAAATAATTTAATGGGTGTTTAGATTTGTTAGATTTGGATCTTGCAGAAAT
CDS sequence (LotjaGi6g1v0205200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAACATCTTGGGCATGCACTGTTATCATCCAAGTGTGTCTCTGCTTTGCTTTCTACATAGCTCTCAACTTGGG TCAACCTCAGAAATTGGTCAAAACAAATGCAAGTGGCCATGAACCTTTTGATCTCTACTTCATCAGTGTCAGAGGGGGTT TCAGACCCCATTTCCAGCAATTCCATCTTCTCAAGCAGATGGAGAAGGTGGCCAGAATTTACAAGGCAAGTTTTGTTGTG AGCAGCAGTGAGCTTGGGGAAGATGATCCTCTCATGCAGAATGCTACTCAACATTTTCCATCATTGAGAATTCCCTGGTA CAACACCTACACTACTGCAGCCTCAAAATCAGAAGGACAAGAAGCGGTTTGCTTTGAAAAGAAGATCAAGATATCTAATG GGAAAACCTTAGACGTTATCGGTGTGGATACTCAATTACTGCAAGACTCTGTCTTAAGGGGATCATTAAGTGGCAATAGA AATAATAAATTGCATTTGCTGATCAGAACATTGGAAGCAAACAGTAGTAACTGGCGCATTGTTGTTGGATACCAACCACT TATCATCTGTGGAGAGAATAATAAGGAGCAAATGAAGAAGAAGCAAGTTTTTGAGTATTTTCACCGTATGTTTCTGAAAT TTGCAGTAAATGTATACCTGAGTGGACAGGATTGCACTAACCATGGCAATGATGGTAGTGTTGCTTACATAGGGAACCCT GGCCTAGTTGAGAAAGAGCCTTATTCAATTTTTCTAAATGGAAACTCTCACTATAGCAGAGAATTGGCTAATGGATTCCT TCTTCACCGAGTCAGCTCAATGCAAATTGTAACCTACTATATAAATTTAGTTGGTGAAGTTGCTTTCAAAAATGTGCTCC AACAGAAGGGTACAGATGTTATGTAA
Protein sequence (LotjaGi6g1v0205200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKTSWACTVIIQVCLCFAFYIALNLGQPQKLVKTNASGHEPFDLYFISVRGGFRPHFQQFHLLKQMEKVARIYKASFVV SSSELGEDDPLMQNATQHFPSLRIPWYNTYTTAASKSEGQEAVCFEKKIKISNGKTLDVIGVDTQLLQDSVLRGSLSGNR NNKLHLLIRTLEANSSNWRIVVGYQPLIICGENNKEQMKKKQVFEYFHRMFLKFAVNVYLSGQDCTNHGNDGSVAYIGNP GLVEKEPYSIFLNGNSHYSRELANGFLLHRVSSMQIVTYYINLVGEVAFKNVLQQKGTDVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 301 | 301 | 7.4E-118 | – | |
| PANTHER | 1 | 301 | 301 | 7.4E-118 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| Phobius | 25 | 301 | 277 | - | – | |
| SUPERFAMILY | 59 | 289 | 231 | 7.02E-7 | – | |
| Gene3D | 83 | 300 | 218 | 6.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0205200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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