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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0207600 |
| Transcript ID | LotjaGi6g1v0207600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol-glycan biosynthesis class X protein; TAIR: AT5G46850.3 phosphatidylinositol-glycan biosynthesis class X-like protein; Swiss-Prot: sp|Q8TBF5|PIGX_HUMAN Phosphatidylinositol-glycan biosynthesis class X protein; TrEMBL-Plants: tr|G7LGX6|G7LGX6_MEDTR PIG-X/PBN1 family protein; Found in the gene: LotjaGi6g1v0207600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50539076..50545148) extracted from Lotus japonicus Gifu genome v1.2.
TCAACCTTCAAAGAACTCAACCTAAGTACTCCCTCCATAGGTAAAACATGCATCACATCTCAACTGCTAAAGTATTTAAT AGTCGTATTCCTAATTTTACAACATTAAAAGCACATGTTTGTCAAAGTCTTGCCAACTTCAAGCAAATTTGGTAAAATAT ATATGAGAGAAATTTGAAGATAAGAATAATAAAATTTAATTTTTGAGACAATATTTTGTATTTCATTTAAAATGCATTGT TATTTATTTTTCACTAATCTATTTCCTTTCATTTCCAATTAACACATTAGTTTAAGAATAAATAATTATTAATTTTTTTA AGGGAGAAATTACATTCTAAAAATTTTCTAAAACCACATTTAACTCTTTTCTATAATTAAAAAAAAAGTTATCTTTTCCC CAAAAAATAAAATTCATTTTTGCTTTGGATTTCTTCTCTCTTTCTCTCCCTATTTGCAGAGCAACAATGGCAACATATCA TTTTCAGTCACAACTTCATCTTTCTCTCTCGGCTTTGATCTCTGCTTGCGAAGGCGATGCAAACCAGTGATCATTGCTTT TTCCATTTTCCCGTTCTCCGCCGAAACCTAATCTCTCCGTCGCTATTTCCCTAAACATCTCCAATCGCAGCGATCTGATT TTTGGGTTCAGCCTCCACAGTGAATCATCACTGTTTTAGGGGTGTGCCATCTCTACAGGTCTGTGCATTGCTCCCTTGTA GTTACTATGCTTTTGGAACACTTAGATTACTCTACTAAGATGCAGATGAGTTAAGCACAAAATATTCTGTTTTTTCAGGT TCTTCATGGGAAATTGGCATTGTATTCAACTCTGCATATATTTATTAGCAGTGAGTTCATGTATATGGTCACCTGGAAGC TGTTTGCTTGGTGATTCAGTGTCAAGTCAGGTTAGTGATAATTGTTATTGGATGATTCTGCTCTGTCTTGATAGGAACCC CGGTAATCGATAATTAAAAGAAAAATTGGAATAGCCCCAGATATAGAAAAATAAGAATCAATAGAAATATAGATCATTTG CCTTCAACCTAGATATGCCCTTGGAGGAAACACAGGAGAATAGGAGGTTTCCTCCCAAGGACTAATTCAATAGGTGTGCA TTTAGTAGCTGCTCCTTGGTGTGTTGAATTATACTGATGCTCAGCCCAATCAAACCACACAGCCTATTGTTTCGGATGCT CTGAAGCAAAGCAACAAAGATAAGTTTCCACAAATTAGTTTCAAACTTAAGTTTGCCCATCTGTATCTGGATGATAGGTT GAGCTCATTCGAAGGGCAGTCCCTTGAAGCTTAAAGAACGCAGGCCGGAATTTGATTAAAAAAATTGGGTCCCTATCACT TCCAGTGGAACTATGAACTTTGTGATGTCTAATTATTTCCTTGGCAAACAATTCAGCAACAATTTGAGTTCAGAAATGAT GCTTTAAGAGGATAAAATGGCCATATTTAGATAACCTCTCTACTAAGAACAGAATCTCATCATATCCTTTTCTCTAATAC TTTTTTTCCTGACAGAAAAAGGAAGAAATTTAATGGTGTATTTATTGCAAGACTTTTTATAGACGACACTTATGTAGTTC TCTTAGTTTTGCATAAATCCATATAAGCTGGTCCATTATTTCCTTTTCTTTGATACATTTCAATAGTTCACCTTAACCTT GCCATAGCCTGAAGAATAACATCTTAGCTTGACCTTGCTCATGCGCAAAAATACACCCTATTTGAGTGTCCTTCTTTACT GTAAGTTTTGTCGTAATATCTTGCATTTTCAGGCGGTGGATTCTCCAATTTCTGACTCCAATAGCAGAAATGCTGAAGCT TTTTCTCCCATCAAGGAATTTCTGTTGAAGTCTTATTATGACCGATATACAAATTTAGATGATTCAGATTTTGAAATTTT CGTATCTCGAGAAGTCACTTCTAGTTTGTGTGAAATGCTTCCGGATGACCATAATTTCATGTTGAGATTGTCAGTTCTGA AGCGCAATCTTATTGGTGAAGGTTCTCATCGTAGTATATCTACATTAATCAAACTTCAAAACCAACCGTCAAAGTCTTTG TCTGAACTTTTAAGCCACTCATGTGAATTCATATTTATCGAAAGACTGCCTTCTGGAGTTTTCGCTGATCCATTTGAATT ACAACGTCTCGTTCAGCGTGGTGGTAAGTACTATTTCACCTGCTTTTCAGATTTTTAGGGGAAATAAGGGTGGGGGGACA GATCCATATTTTTAAGTTTCAGGAATATCTCCATATTTCTTCAAGTCAATAACACTTTTTATTTCAGTGTTCAACGATAT AGCTGTCTTTGGTGATACAAATCTGGAGCTGCCTTCGTTCCTGTCCAATCGTTCTGCTGTTGAAATCCACTTAGATGTTG ACCCAAATATATTGCTAGAGCCTTCTAATATCAACATAGAGCTTCCATTGCATGCACGATATCAAGTAAGACTATTATAT TGAAATGCCAATTTTCAGCTATAAGTTTCCCTTTCTATTTATTTGAATCTAATGTTCTGCAAACGAAAGTAGGCTAAGTA TCTTTTGAAGGCATTATCACCATACCATAATTGCTTGAACTAGAGATCAAGATGATCCTATGCAGCATACACCATTTCTA GTTAATTTTATGATTTGTCACCAAAAAGTATTGCTTTTATTAACCATGAGTGCTATATGTTGTAATACTAGTATCAACGA AAGTTGTGGTTTGAACAAAATATTATACTTGTATTACTATAGGTTTTCCCTTGCCATATACACTACAGTAGTGCCTCAAT TTCCTTACTTTTCCTCGTATCTTGTAGCCTCTGAATGAAAGTGGCTACTCGACAATTAAATTTGGTAAACCAGATTTGCT AGTGCGTTGCAGCACAAAAGAAAAGATGGGAAATCGGAATTGCTTCCTCAAATTAAAAAATGATGATGCCAATCTGGATG ATCCTGATCTTTTTTGGAGAATACCTGCTGGAAGAAAGGCGCATGCTGATGTTGTTTCTGCTGTTACATTCATTGCAGCA TTGTTGTCAACTCTTGTAATTGCTGTCACCTCATTAAGTTTGACTAATAGCAGACTAAGTAAAGATTTAAAACAATCATG AACGTTTTGTAAATGATAATTTGTTTTGTTTACCACAGTAACTCTACACATGTGATGTTTGTTTTATTTATTAATGGAGT ATTTTCTCAATAGTCAGGAAAATGAAAATGGTTAACTTGTTATTTAACCAAATATAATGGTAGTCTCTAAGATAACAACC TAATATAGAATCTATCGAACATAATTTAGCATGATACCTCCTTATATAGTTCGGCTTAGTACTTGTTTAGCTTGTTCTTT CTGGTTAGCTTTACCTTCGTTTTTTTTTTTGAAAAATGATCCATGAAATTCATTCATCAAATTGATTGAGTACATCATTT TGCAGAATAGAATGAATACCATGGAGTAATCTTCAATTCAAGTCTTATTCTGAAAAGTGAAAGCTAATTTAGCTAAAGAA TAAGCTACTGAGTTACAAGATATATTTGCATATAATAAATGACATTATTGGAAAATAGATATAATTTGTAGGTAATCCTA TCACTGTATCAGGAGCGACTAGTGAGAGGAGTTATTTTTGTTTTTTGAATTCCAGGCATCATGCATTCATGCTACTAACT TACAATCTGTTTCAAAAACTACTCTTATAAAACAATTCTTTTGCCATCCCCATTACCCATAGTAAAGAAAGAGTATCTGC TATAGCTAAAACTTCTCATGAATCATGGAGTAGTTGGTGAAGTAGATGATTGCTCAAACATTTTTGCTGTGCTGTAGCTA AAACTACTTCACCAAGAGAATGGTAGCCTTCACCAACAGACGGTCATGGAGTGATTGCTCACTCTCCACAAAGGCTTCAA AATCTTCTACCTTCACCAAGGGAACAATCCATTGGAAACAAAGATAAATACAAGGCTAGCTCATACAATGAAGAGAGTTA GCAGCGACAATAGAAGCATCCCCAACTTCAATCCTCTTTTTCTCTTCTCTTGAAAAGTTCATGTGTCCATGTGCTAATAC TCCTCAAGAACAGTGAAATTGAAGTAGCACAAAATTGTAAGAACCTATGCTTGAAGCTAAAGAGAGTTTCAAAAGAAGAT AAGCCCTCCTCCACCCCTAGACATTTCTCTAAAAGGTCTAAAACATTTGTAATTATTTGAAGCAGATAGAAACAGATTTT TGCATCATAACAAAATTGTACTACTAACATGCAAGTGAATCTGCCAATGTCATACCATAACAAGGTTAAACATTCCCTGT AATTTTTTATGTCCCAGCTTTGAAATGAAGTAACTAAACTAAAGCTCTCATTGAATTGGTTTCCTTCAAGTTTTATTCAC AATCATTTTCTTCCAAAGAATTTGTGAGTATGATTTTACATAAATACATGCACCAGTTATAAGAAATCTTCTGGGATAAC ATATACATATAGAAAGAAATCAAGGGAGAGAAGGAGTGAGGGAAGGCTTTGCAACTTTGAGCTCCCCACAGTCACTAATA TAGACAATCTTCAGAGGCTTGTTCCATATAGAACGAGCATTCTGTGCCCTGTCATCTCCAAAAAACTCAGCCAAGTCATT AAATTGCCGAATCCTTTCAGACGGTTTGTAAGTAGGAATTGAAGCAATGGCTGTGATAACATCCAACCCTGCCATCGCAA AGATGAAATCATGATTTGATTCATATAATCTAATCCCCAAACAAATCAATACAATCCAATTATTGATTCATAAAATGAAC CAGTGTTGTTAATCACGGATTGCGGATTATAGTGGTAAGCCAAAAATCCGCTATTTCCAGCCTCTTAAAGCAGAAAATAG CAGAAATAGCGGGTAATAGCGGAGTAGCCGTAAGCCAAAAAAGTGCTACGTTATAACCGCTATTTGACAACACTGAGATG AACCATTTCAATATAAGATAATGAATCTCAGCATCTATATCAAATTTTGATTCATATAATCTAATCCCCAAACAGATCAA ATACATTTCAATCAAAGGATAATGAATCTTCTCAGCAACTACATCAAATTTCTCAAACCATTCCAATGCAGTAGCAGTAC TATTTACAATTTTCCTTCAAAATCAATCAGCAAATGCAGGTAACCATGGAGAATGGAAACAGTGATTACCTTCAAGCACG GTTCCAAAGACAATGTTCTTGTTATCAAGGTCAGGGCAAGGTCCAGGCCCGGTGGTGATCAAGAACTCAACGTTCCGGTA CAATGGGTCAAGCTTGATTTCTTCGTCGTCATCGTTTTCGGAGAGGGAGAGCGAAACGACGCCGGGACCGGAATGCGTGA GGGCGAATGCGTTAGGGTTTATCGTTTCGGTGTTGCGGGGGAGGTTGAGCGGGGAGCGGACCTCGCCCTTGTCGGGTCTA CCCTGGCGGCCGGCGAGGAAGTAGCGGCCGGGGAAGAGCTTGTGGACGAGGGTGTTTTTGTAGGAGGAGGAGGAGGGGTC GGAGGAAGCGAGGCAGAGGGATTTGAAATTGGAGACGGTGAGGGGGACGAGGTTGCCGTAGAGGCCAAGGACGACGCGGC CGAGAGGGGTGGAGTCGGAGCAGACGGTGTCGCGGTTGGGGAGGAAGGAGGTGGGGCAGAGGCTGAAGTCCATGAAGACG CGGTCGGTGATGGTGGTGTTGGGGGGTGGAGTGGCGGAGAGGGAAGGGAAGGTTGGGAGGGAGAGGGTGGAGGATGTGAA GAGGAGGGAGCGGCGGGTGAGGTGGAGAGACGGAGGAGAAGGTGGTGGTGGCGGTGGTGGAATGCAAGAGGTCATGGCGG AGTGTGGTGGATTTGTTCATTGTTGGGTTTGCTCGCAACTATGGAGTGAAAAGAGTGGGGCCTACTTTGGATTAGATGAA GATAATTCAAATAATATCTACTTACCAAAATGACAACAAATAAAACCTTTATACATATTTTTTCTTATTTTTGAAGATAA TGTAAATGGTTTTCCAGAGAAGAAAGAGTTGACAGCAACAAAATTTCTAACATTCTTCTTTATAAACTGAAAT
CDS sequence (LotjaGi6g1v0207600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATTGGCATTGTATTCAACTCTGCATATATTTATTAGCAGTGAGTTCATGTATATGGTCACCTGGAAGCTGTTT GCTTGGTGATTCAGTGTCAAGTCAGGCGGTGGATTCTCCAATTTCTGACTCCAATAGCAGAAATGCTGAAGCTTTTTCTC CCATCAAGGAATTTCTGTTGAAGTCTTATTATGACCGATATACAAATTTAGATGATTCAGATTTTGAAATTTTCGTATCT CGAGAAGTCACTTCTAGTTTGTGTGAAATGCTTCCGGATGACCATAATTTCATGTTGAGATTGTCAGTTCTGAAGCGCAA TCTTATTGGTGAAGGTTCTCATCGTAGTATATCTACATTAATCAAACTTCAAAACCAACCGTCAAAGTCTTTGTCTGAAC TTTTAAGCCACTCATGTGAATTCATATTTATCGAAAGACTGCCTTCTGGAGTTTTCGCTGATCCATTTGAATTACAACGT CTCGTTCAGCGTGGTGTGTTCAACGATATAGCTGTCTTTGGTGATACAAATCTGGAGCTGCCTTCGTTCCTGTCCAATCG TTCTGCTGTTGAAATCCACTTAGATGTTGACCCAAATATATTGCTAGAGCCTTCTAATATCAACATAGAGCTTCCATTGC ATGCACGATATCAACCTCTGAATGAAAGTGGCTACTCGACAATTAAATTTGGTAAACCAGATTTGCTAGTGCGTTGCAGC ACAAAAGAAAAGATGGGAAATCGGAATTGCTTCCTCAAATTAAAAAATGATGATGCCAATCTGGATGATCCTGATCTTTT TTGGAGAATACCTGCTGGAAGAAAGGCGCATGCTGATGTTGTTTCTGCTGTTACATTCATTGCAGCATTGTTGTCAACTC TTGTAATTGCTGTCACCTCATTAAGTTTGACTAATAGCAGACTAAGTAAAGATTTAAAACAATCATGA
Protein sequence (LotjaGi6g1v0207600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNWHCIQLCIYLLAVSSCIWSPGSCLLGDSVSSQAVDSPISDSNSRNAEAFSPIKEFLLKSYYDRYTNLDDSDFEIFVS REVTSSLCEMLPDDHNFMLRLSVLKRNLIGEGSHRSISTLIKLQNQPSKSLSELLSHSCEFIFIERLPSGVFADPFELQR LVQRGVFNDIAVFGDTNLELPSFLSNRSAVEIHLDVDPNILLEPSNINIELPLHARYQPLNESGYSTIKFGKPDLLVRCS TKEKMGNRNCFLKLKNDDANLDDPDLFWRIPAGRKAHADVVSAVTFIAALLSTLVIAVTSLSLTNSRLSKDLKQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 13 | 301 | 289 | 2.1E-77 | ||
| Phobius | 17 | 34 | 18 | - | – | |
| Phobius | 35 | 279 | 245 | - | – | |
| SMART | 109 | 304 | 196 | 8.2E-8 | ||
| Pfam | 112 | 298 | 187 | 2.0E-27 | ||
| Phobius | 280 | 303 | 24 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 304 | 315 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi6g1v0207600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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