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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0208300 |
| Transcript ID | LotjaGi6g1v0208300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT2G25620.1 DNA-binding protein phosphatase 1; Swiss-Prot: sp|Q69QZ0|P2C27_ORYSJ Probable protein phosphatase 2C 27; TrEMBL-Plants: tr|A0A151R2Q9|A0A151R2Q9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0208300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50607138..50608893) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTTTATACCTGCTCTTCGGTCTGGAGTGTGGTCTGATATTGGAGACCGCCCTTACATGGAAGATACCCACATATG CATTAAAGATTTGGCAAAGCAGTTTAATTTTGATAAACAATCTAAGGAAGCTGTTTCCTTTTATGGTGTAAGCCCTCTAC CCCAGTATGCTGAATTGCTGATTCCTTTCTGTCCTGAATTTCAATTTAATTCTTGTTTTTGTGATAAGATATGAATGATT TAAACATTCTTGATCCATCACTGTATTGAGACTATCAAGCAAGTCTTGAAGAATATGATGTATCTAATGATGAATATCTT AAAGCCAGGGAGTTCATTTTAGATGACCAAATGACCAGAAAATTTATGATCCTATTAGATTTCATTTTCCATTAACCTAT GCATGCAGCTGATATTCACTTATTGAATACTTGAAGTAGGTATTCAGCATTGAGAATGTCTCCTTGTTAAGTTAATAGTG ACATTCTGACCTCCCATCTTCTTCATTGTCACTCCTTGTCTTCCCAATTCCTAGTTGTAGTTGCATAACCATTTTAGTAT ACATTCGGTATTTTATTAAACTCAACGCTATCAACATTTGAGTCAACGTAGCAAAATCTTACTTCTTTTGTTGATACGTT GGGATGTGTGTTTTTCCCAAACAGGTGCGGTTGACTTCAGAAAATGTGGATAACAGAATGATATGAGGATAAACATCTTT ATGGTCAATTTGCATAGGATTATTGGAAACCTTTAATTAGGACTTAACATGTAAAAGGTAAATGGTCCAATGTGCAGGTA TTTGATGGACATGGAGGGAAGAGTGCTGCACAATTCGTCCGTGATCATCTGCCAAGACTTATTGTTGAGGATGTTAACTT CCCTTTGGAGCTAGAGAAGGTGGTCAAAAGGTCATTTATGGAGACTGATGCTGCATTTTTAAAAGTATCTTCTCATGAGT CTTCCCTTTCTTCTGGTACAACTGCTCTAACTGCAATCATATTTGGAAGGTGAGAACTTGTATTACTGCTCTTTAGCTGT CAGAAGTGTAGGACGAATTTTCCAGCAACATTTGGGTTTGACCTTTCAGTTTCATATGATATCAGCAAATGTGAAAGTGG CACATTGACATTAGATTCCTTTTGTCTCATAGATTCTTGCCTATATATCACTGACGTTTCATTCTCTTGAACAGGTCATT ACTTGTAGCCAATGCTGGAGACTGCAGGGCTGTAATGTCCCGTCGAGGAAAGGTGATAGAAATGTCCAAAGATCATAGGC CAAACTGCATTAAAGAAAGAATGCGGATCGAGTCCCTGGGTGGATTCATTGATGACGGTTACCTGAATGGTCAGTTAGGT GTCAGTCGTGCTCTAGGTGATTGGCACCTTGAAGGAATGAAAGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACC TGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGGGTTTGGGATGTTTTTAGCA GCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTACAAGAGCACAATGATGAGAAACTGTGCTGCAAGGAAATAGTGCAG GAAGCAATCAAGAGAAGATCAACAGACAACTTGACTGTTCTGATGGTGTGTTTTAACTCAGAACCGCCACCAGCTGTGGC TGTGGATAGAATAAGGGTAAGGAGAAGCATATCCGCAGAGGGACTTCAGAATCTTAAATGTCTGCTAGAAGGGTAG
CDS sequence (LotjaGi6g1v0208300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATACCCACATATGCATTAAAGATTTGGCAAAGCAGTTTAATTTTGATAAACAATCTAAGGAAGCTGTTTCCTT TTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTCGTCCGTGATCATCTGCCAAGACTTATTGTTGAGG ATGTTAACTTCCCTTTGGAGCTAGAGAAGGTGGTCAAAAGGTCATTTATGGAGACTGATGCTGCATTTTTAAAAGTATCT TCTCATGAGTCTTCCCTTTCTTCTGGTACAACTGCTCTAACTGCAATCATATTTGGAAGGTCATTACTTGTAGCCAATGC TGGAGACTGCAGGGCTGTAATGTCCCGTCGAGGAAAGGTGATAGAAATGTCCAAAGATCATAGGCCAAACTGCATTAAAG AAAGAATGCGGATCGAGTCCCTGGGTGGATTCATTGATGACGGTTACCTGAATGGTCAGTTAGGTGTCAGTCGTGCTCTA GGTGATTGGCACCTTGAAGGAATGAAAGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACCTGAACTTAAATTGAT GACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGGGTTTGGGATGTTTTTAGCAGCCAAAATGCTGTGG ATTTTGCTAGAAGGAGGCTACAAGAGCACAATGATGAGAAACTGTGCTGCAAGGAAATAGTGCAGGAAGCAATCAAGAGA AGATCAACAGACAACTTGACTGTTCTGATGGTGTGTTTTAACTCAGAACCGCCACCAGCTGTGGCTGTGGATAGAATAAG GGTAAGGAGAAGCATATCCGCAGAGGGACTTCAGAATCTTAAATGTCTGCTAGAAGGGTAG
Protein sequence (LotjaGi6g1v0208300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDTHICIKDLAKQFNFDKQSKEAVSFYGVFDGHGGKSAAQFVRDHLPRLIVEDVNFPLELEKVVKRSFMETDAAFLKVS SHESSLSSGTTALTAIIFGRSLLVANAGDCRAVMSRRGKVIEMSKDHRPNCIKERMRIESLGGFIDDGYLNGQLGVSRAL GDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGVWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKR RSTDNLTVLMVCFNSEPPPAVAVDRIRVRRSISAEGLQNLKCLLEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 6.5E-152 | – | |
| SUPERFAMILY | 1 | 255 | 255 | 3.01E-72 | ||
| PANTHER | 1 | 268 | 268 | 6.5E-152 | ||
| Pfam | 1 | 245 | 245 | 2.9E-70 | ||
| CDD | 1 | 253 | 253 | 1.28931E-83 | ||
| ProSiteProfiles | 1 | 253 | 253 | 49.682 | ||
| SMART | 1 | 251 | 251 | 1.5E-74 | ||
| Gene3D | 1 | 258 | 258 | 5.8E-83 | ||
| SMART | 3 | 253 | 251 | 0.0077 | ||
| ProSitePatterns | 27 | 35 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi6g1v0208300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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