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LotjaGi6g1v0208900.1

Overview

Field Value
Gene ID LotjaGi6g1v0208900
Transcript ID LotjaGi6g1v0208900.1
Lotus japonicus genome version Gifu v1.2
Description Pectin lyase-like superfamily protein, putative; TAIR: AT5G17200.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|A0A0B2RJE5|A0A0B2RJE5_GLYSO Putative polygalacturonase; Found in the gene: LotjaGi6g1v0208900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:50648680..50651578) extracted from Lotus japonicus Gifu genome v1.2.

GAACTCAGAACAGAGAATTTCAGAGAGAGACTTTGCCCTGTATCTGTATGGATTACTACAATGCAGATTGAAAAGGGAAA GTCATTACTTTTTTCATTGATTTGTCTTTTTAATTTTTTTTTTTGCATAGTTAAATTTAGATAGCTTCTCAAATGTGCAA ACACGCCCCAGGCTTTAGGCCGGGGTTCAAATCATCAAGAAAAATAAGATTCAATACAATATTGAATGCTCTTATTTCCT CTACTAATATCAATGCCAATTAATTTCTTTTTTTTTTTACTTTCTGTTTCTTCTTGATTTTGTTTAAGCAGTCAATTTCA TCAATGCCATTAATTTGTATCCAGAAAAGAAACTCATCCCACTAATTAATTTGTAGGAAAAATTGTCTCATCTCATTAGT GATCAGTTAGCAGGAACATGTATACATATATTTCTCTGCTTCAGTTCCTTCCTGCACATATTCATTTCCATTCAGATAAT TAATCAAATCAGTCTAGCTAGAAAAGACTGTTTTCCACATTCTCTGAAGTTATTTCATCATGAAAGTTCTGGCTGCTACA CTCTTCATATTGTCCCTTGTTTCATGTTGTTCATGTAATAAACTATTGAAAGTTACCATTTTCAATGTAATTGATTATGG TGCTGTTGGAGATGGCCTCACAGATGATTCTCAAGTAAACCATCCTTAATTTTTGTTTACATTGAACACATTAATTTTTC GGTGAAGAAAAGTGTGTAAACTATATTTATCTGATTCCACTGTCAAAAAAAAATGCTTCTTGTTATCATTTACTTGAATT TGTGTGGTTTTCAATATTCAATACAAGGTTTTCCTGAAGGCTTGGAGAGACGTTTGCATGATGAATAAAGGTACTTCAAT GCTTAAGGTCCCATCAGGGAAAACTTTCTTGTTGAATCCTCTGAAATTCAGTGGTCCCTGCAAATTCTCTTCGGTTCATT TTCAGGTTGAATGTGTACCACATTTTAATACAACTTTAATTTCTCTAAGCTGAATAATCAAATCATTTCAATAACTTGGT TTTTTTTCTTTGATTTAATGTGATATAAAAGCTTGAAGGAAACATTGTTGCACCAAAAAACACTAAAGCATGGAAGGACA AAGACTATACAAAGTGGATTGAATTTTCGAACATAGATGGCCTAATAATCGATGGAGGTGGACAAATTGACGGCCATGGT TCTGTTTGGTGGAAATCTTGTGATGTTAGTTTGGAGTTTGTGCCATTGTATTTTTACATTCATTTCTATTTATATAAATA GGAACTAAGAAGAAGCATTCTTTGTGTGTTTTGTACTTATTAATATTTTTTTTCAGGTGACAAGCTGCCCCAGACCAACG GTAAGATATATATTTTTTTGTGTATCAACTATAAAGACATTTGACGTAGACGCATGAAGCAGTTACACATTTAGATAACT GGTTTTTAATTGAGATGACACGATTTAATTGACCGAAAAAAAAGGAGATCACACATTTTTATGCATGAATTACTGATTTG CTTGATTGAGCAGGCCCTGTACTTTGACAACTGCAACAACCTCCATCTAAGTGGAACTCGCCATCTCAACAGTGCTAGAA ATCACATATCCATACATGATTCCACTAACACAAAATTTTTCAATGTCACTATCACTGCACCTCAAGATAGCCCTAACACT GATGGAATTGACATTTCTCAATCAAGCTACATTCTAATTCAAAACTCAATCATTGCAACTGGTAAGAGGCATAGAAAATA ACATGCATTTTTTTTACATTCCATTCTAGGCGATATTGCAATGTGAATATTGATCCAATGCAAACAGATGTTAGCACTTA TTTCAAGATAAAAATGAACGAAACTCTTTTTTATTTCAACAGGAGATGATTGTGTTGCCATCAACAATGGTACATCAAAC ATTAACATTACTGGGGTAACATGTGGACCAGGCCATGGTATAAGGTACAAAAATACATTATCATGATAGAAATTTGATTC TATTGATAGAATTGCCCAAAGTAAAATCTGTTCTATGTTTCTTGTGGCTATGCGTTTCAGTGTAGGAAGCCTTGGAGCAA AAGGATCTTATGCAGTAGTGGAACAAGTACATGTATACAATTGCACTTTCAAGGGATCAGATAATGGAATGAGAATAAAG ACATGGCCGGTACCAAGACAATTTGACTAAAGATAATAATCTATTTATGTTCATTTTATTTTCATAATTAGTTAATTAAT TCCATTTTCCCTTTCTACAGGGTGGATTCGGGTATGCTAGAAAGATCTCATTTGAACATATCATACTTGAAGATACCAAA AATCCTATAATTATTGACCAGAACTATGTAGATAAACTGGATGAAGACAATAATAATAATCAGGTTACACTAAATTGTGT CATATATAGGCAACATTGCTATTTTTTAATAGATTGCATATAATTTTAATGAACTAATCTGTATTTTTGGAATATGATCA TGTATATACAGAGATCAGCAGTGCAAATTAGTGGGGTGACATATCGTTATGTGAAGGGAACTTCTGATAGTAAGACAGCA ATCATTCTGAATTGCAGAGGGAAAGTGGGGTGCACTGATATCATCATGGATGCAATTAACATAACTTATGCTTCTTCAGG ATCAGCTACACAATCTTCCTGCAGCGATGCCCATGGAGAAGCTTTTTCTACTTCACCATATGTGTCTTGCTTGTCACAAT GACCCTTAGATGTTTTTACTGGCTCTCGCATTTGATCATTCCTAGAATAACTTAGAATTTGCCTTTTGTTTTTGCTTCTT TCTTTAGGTAGTTCTCATCCTAGAAGATTATGTTGCTTTTACTTAGAACTCCATTTATAATTCATCAGTTAGATTTGATT ATTTTGGTTCTGGTATTTT 

CDS sequence (LotjaGi6g1v0208900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATGAATTACTGATTTGCTTGATTGAGCAGGCCCTGTACTTTGACAACTGCAACAACCTCCATCTAAGTGGAACTCG CCATCTCAACAGTGCTAGAAATCACATATCCATACATGATTCCACTAACACAAAATTTTTCAATGTCACTATCACTGCAC CTCAAGATAGCCCTAACACTGATGGAATTGACATTTCTCAATCAAGCTACATTCTAATTCAAAACTCAATCATTGCAACT GGAGATGATTGTGTTGCCATCAACAATGGTACATCAAACATTAACATTACTGGGGTAACATGTGGACCAGGCCATGGTAT AAGTGTAGGAAGCCTTGGAGCAAAAGGATCTTATGCAGTAGTGGAACAAGTACATGTATACAATTGCACTTTCAAGGGAT CAGATAATGGAATGAGAATAAAGACATGGCCGGGTGGATTCGGGTATGCTAGAAAGATCTCATTTGAACATATCATACTT GAAGATACCAAAAATCCTATAATTATTGACCAGAACTATGTAGATAAACTGGATGAAGACAATAATAATAATCAGAGATC AGCAGTGCAAATTAGTGGGGTGACATATCGTTATGTGAAGGGAACTTCTGATAGTAAGACAGCAATCATTCTGAATTGCA GAGGGAAAGTGGGGTGCACTGATATCATCATGGATGCAATTAACATAACTTATGCTTCTTCAGGATCAGCTACACAATCT TCCTGCAGCGATGCCCATGGAGAAGCTTTTTCTACTTCACCATATGTGTCTTGCTTGTCACAATGA 

Protein sequence (LotjaGi6g1v0208900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHELLICLIEQALYFDNCNNLHLSGTRHLNSARNHISIHDSTNTKFFNVTITAPQDSPNTDGIDISQSSYILIQNSIIAT GDDCVAINNGTSNINITGVTCGPGHGISVGSLGAKGSYAVVEQVHVYNCTFKGSDNGMRIKTWPGGFGYARKISFEHIIL EDTKNPIIIDQNYVDKLDEDNNNNQRSAVQISGVTYRYVKGTSDSKTAIILNCRGKVGCTDIIMDAINITYASSGSATQS SCSDAHGEAFSTSPYVSCLSQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 8 259 252 6.2E-80
SUPERFAMILY 11 259 249 1.41E-79
PANTHER 11 260 250 2.1E-100
Pfam 11 246 236 7.7E-73
PANTHER 11 260 250 2.1E-100
SMART 41 67 27 250.0
SMART 68 89 22 710.0
SMART 91 111 21 5400.0
ProSitePatterns 98 111 14 -
SMART 121 142 22 27.0

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0208900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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