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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0209900 |
| Transcript ID | LotjaGi6g1v0209900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein OS-9; TAIR: AT5G35080.1 ER lectin-like protein; Swiss-Prot: sp|Q8GWH3|OS9_ARATH Protein OS-9 homolog; TrEMBL-Plants: tr|A0A072V8G7|A0A072V8G7_MEDTR Glucosidase II beta subunit-like protein; Found in the gene: LotjaGi6g1v0209900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50747511..50750805) extracted from Lotus japonicus Gifu genome v1.2.
TGGCAACATTGGATTGGTTAGAAAACGTGGAAGCTGAGATCTCTGGTTCCGAACACATTTGAAGCAAAGGAAATAACTGG GTTTGCGTTTCGCGTTGCTGTGAAACTTGAAGAAGAAGAAGAAGACGATGAAGAACAACACGAGGGCATTGATTCTGCTC TTGATCTTCACCCATGCCTTCGCCGAACAAATCTTCCCCGTTCATATCGGTAATCTTCTACGCATTCTGCAACCATCATC TAAATCCAAAAACCCCGAATCATATCATTGCTATATAAACCTTAATCTGATAATCTCTCTCTGCTAACAATTTGACCAGC TAGCATATTCGGCGGCGGCGGCGGCGGAACCAGCAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATT CCCCTTTCCACCCTGTAAGCTTTCTACAATTGATTTCATTTTTTACGATTTGTCTTAACCCTAGAAATTGGTATTCATTT GGTTCCGAAACTAAATTCGAGTTTAATTGAGCTGTTAATTGCATGGTGTTAGAGAGATTGGGAATTAGGGTGAGTTGGTT GATTTTTAGGGTTTGGTAGTTTAGTGACTGATTGCAAAGAGTGATGATTCTGTAACTAGTTTGTGAAGCTTTGCTTGCAT TGGTTTCTGATATGCGCTTGCGATGCTGCTGAATTTGTAGGAGGATGATCAGGAATCGATAATTATGCCGGATAAAAATG GGCAGAAATTTGTTTGTTATCTGCCTAAGGTGGAGAGGGAGAAAAGTGGGAAGCCTGTTATTCAGCACAATGTTAGCAGC ATGATTGTTGAAACTGAGAAGAGGGTTAAACAGAAGACGCCGGATGAATTGCTTGAAGTGTTGAAGGGTCCATGCTTTCT CAGAGTTAGTATTTGCATCTTTATAGTGATGTACTAGTTTTTGTTCGTTAAGTTTATGGTCTGATTGTTTGGTTCTATTT TAAACTTATGGCATCTATTGTGAATCAGTTTTTGACACTGGATTTTGTGTTTGTGCAGCAAGAAGGTTGGTGGTCTTATG AATTTTGCTATCAGAAGAGGTTGAGGCAACTACATTTGGAGGATGACAAGGTATTCACTTAATTGTATTTAGTTTTCGCC CTTCATGCTCTTTTAGCAAGCTTTTCTTTACTTCACCCTCTAGTTAATAGTACAATGTGAGCTGGATTACATTCATGTAT GAGTTCAAATAAATTCCTAATTTACAGGTTAACATTGTTTCCGCGCTGAGAGTCGTTTTGATCTCCTATTTGATAAAAAA TATTATCACTCTATGTCCAAAAAAATAGCTCCAAATTTTCCTAATAGATTCAGTATTGATACCACTTACCTGGCTTTCAA TTATATCCAAATTATACCAGTTTATCAAATTATATCCATTTACTCATAATAGAAGACAGTTCTATAATGAGAGAGCTTAC AAGAGGGCATGTTTATCAAATTGGTGGTTCCCAACACAATGCATTAAGCAATGTGTGTTCGTCCACAAGGAAATGTATAT CTTTCTTTCTCATAATGGGGCTTCTTGTTGCTATGTAAAAGGAAAGATCTAAATTCCCTGCTACCATCCTGGTGATAATG TATTACTGCTAGTAGAAGTGAGCTCTTGATAGAAATCTTACTTTCAGAGCAGTACTATTTATGGTTCACTCATCGATATT GATGTGTTTTTAGCAGTTTTCAATTGAATATTTGTGTTGTTCTATTTTTATCCGGAACTTGTAAAATCATATGTTCATGT ATATAATTAGTGAAAAGTCAGTTATTGATATAAATCTTACTTTCAGCTACTTTTCCTTGTCACAGGTAGTCCAGGAGTTT GTCTTGGGTGTGTATGATCCTGAGGCTACAGCTGCGTTTAACCAAAATCTTTCTGACATTTCTACATTGAAGGATCCCCG CTCAAAGGATGCATCTCAAAGGTACCTTCTATAAATTTTTGTTACATATCTATGAAGATGGGGTTAACTTGGAGAAGTGG TTTCGCATGATAAATGCCCTGATGTAAACAAGTACTTAAATTAGTATATCATGTTCATTCAGGTATCATGCTCACCAGTA TACTAATGGAACCATATGTGATCTTACCAATAAGCCTAGAGAGACCGAGGTATGTATAATCACAAACATCTCTCTTTTAT TCTTTCCCCATCCTACTGATTTCATATTTTAATTTGAAGGTGCGGTTTGTATGCTCGGAACCCAGAGCAATGATTAGTTC AATAACAGAGATTTCCACCTGCAAATATGCTCTTACAATTCAATGCCCTACGCTATGCAAGCACCCGTAAGTTCTCTCTT TCTTTCCATCTTTCTGGGAAGTTTTTATCCCACCACTCACTAATTATGCCTACTAAGTTATAACGTATGAACACGCGCCG CTTACAACATATTTATGCTTTTAATTTTTATGCAGACTGTTTCAAGAGGAGAGACCAGTATGGCACACCATCGACTGTAA TGTACTACCAAAGGATTACAAGGATGCTAAAGGGAGACAAGAAAATAGAGATGTGGAGATTGTTATGGTCACAGACAATG AAATTAATGATCCTGAACAATGATGTGAATATACACAACTGAGAATGGAAGGGGAAAAAATAGAGCAAGTTGTCAGCATG TGTTTTCTACTACGGAAAAACAGCAGATGGACATATTCGGATGCATGAAACCGGGGAATGTGTGAATCATTTGATGTGCA GTGCATACGTTGCTATATGTAGTTTTGCCATACATATAACTGGCCCAACAGGCACAACCCAATGGCATAGTCATAGTCGG CATTCCTATTTAGAGTACCAGACTGAAAATGAGCTGTTAAATATTTGTAGTTAATTGATTTTGTTATAAACTAGTGCTTC ATACTCGCTAAATAGTGTTAGAGTTCGTTCAGTACAATTATACCTTATATGCAAGAGTATTTTGGTCTGACAAAAATTCC TTCAAGTATTGTTGTGGTTTTACCATTCCAGCTAAGGGTAGTGGCGTTTACAAGAGTATTTGAATTTTGGGAAGGGAATA TTAACATCTGAAGCATGAGTTGTGACCGGTTTAGATTGAATTGGATTCGATGCAGATGATTTTCCACTCAAAAAACTAAT ATAATCGGATTCATGAACACTCCTACTACCATAAATTTATGCTTTCAAGTTTTCTGCAGATTGTTTCAAGAGGAGAGGAT AAGTATGACACACCATCGACTGGAATTGCTTCCCAAGGATTACAAATATGGTTATTGGTATATGGTCACAGATTCTGAAA TTAATTATTTAGAAG
CDS sequence (LotjaGi6g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACAACACGAGGGCATTGATTCTGCTCTTGATCTTCACCCATGCCTTCGCCGAACAAATCTTCCCCGTTCATAT CGCTAGCATATTCGGCGGCGGCGGCGGCGGAACCAGCAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAG ATTCCCCTTTCCACCCTGAGGATGATCAGGAATCGATAATTATGCCGGATAAAAATGGGCAGAAATTTGTTTGTTATCTG CCTAAGGTGGAGAGGGAGAAAAGTGGGAAGCCTGTTATTCAGCACAATGTTAGCAGCATGATTGTTGAAACTGAGAAGAG GGTTAAACAGAAGACGCCGGATGAATTGCTTGAAGTGTTGAAGGGTCCATGCTTTCTCAGACAAGAAGGTTGGTGGTCTT ATGAATTTTGCTATCAGAAGAGGTTGAGGCAACTACATTTGGAGGATGACAAGGTAGTCCAGGAGTTTGTCTTGGGTGTG TATGATCCTGAGGCTACAGCTGCGTTTAACCAAAATCTTTCTGACATTTCTACATTGAAGGATCCCCGCTCAAAGGATGC ATCTCAAAGGTATCATGCTCACCAGTATACTAATGGAACCATATGTGATCTTACCAATAAGCCTAGAGAGACCGAGGTGC GGTTTGTATGCTCGGAACCCAGAGCAATGATTAGTTCAATAACAGAGATTTCCACCTGCAAATATGCTCTTACAATTCAA TGCCCTACGCTATGCAAGCACCCACTGTTTCAAGAGGAGAGACCAGTATGGCACACCATCGACTGTAATGTACTACCAAA GGATTACAAGGATGCTAAAGGGAGACAAGAAAATAGAGATGTGGAGATTGTTATGGTCACAGACAATGAAATTAATGATC CTGAACAATGA
Protein sequence (LotjaGi6g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNNTRALILLLIFTHAFAEQIFPVHIASIFGGGGGGTSSSREPKYKIEFHPEDSPFHPEDDQESIIMPDKNGQKFVCYL PKVEREKSGKPVIQHNVSSMIVETEKRVKQKTPDELLEVLKGPCFLRQEGWWSYEFCYQKRLRQLHLEDDKVVQEFVLGV YDPEATAAFNQNLSDISTLKDPRSKDASQRYHAHQYTNGTICDLTNKPRETEVRFVCSEPRAMISSITEISTCKYALTIQ CPTLCKHPLFQEERPVWHTIDCNVLPKDYKDAKGRQENRDVEIVMVTDNEINDPEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 7 | 272 | 266 | 2.4E-111 | – | |
| PANTHER | 7 | 272 | 266 | 2.4E-111 | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 296 | 277 | - | – | |
| Gene3D | 121 | 241 | 121 | 2.4E-33 | ||
| Pfam | 123 | 202 | 80 | 9.7E-17 | ||
| SUPERFAMILY | 188 | 246 | 59 | 7.98E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0209900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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