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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0210100 |
| Transcript ID | LotjaGi6g1v0210100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heparanase, putative; TAIR: AT5G34940.2 glucuronidase 3; Swiss-Prot: sp|Q9FZP1|HPSE3_ARATH Heparanase-like protein 3; TrEMBL-Plants: tr|I3SJ46|I3SJ46_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0210100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50761140..50764835) extracted from Lotus japonicus Gifu genome v1.2.
TGATAACATTAATGAATACGACATATTCTTGTACCTAAGCCGGTATCTTTTACCTTAAATGCTTCTTGTCTAAAACAATT GTCTTTCTAATCTTAACTTGATTTCACGTATATATTTAGAGCCACATACATAAACATAGTTGCATATTTTGTATAGATTT GCTGAGAAAAATGTGTGACATGACATTAAATTGTCCATCATCATCACGTTCTGTCATCTTGTGACTCTGCAGTAATAAAG GCTGATCCACTATATATCCACCCCTACACCCACTGATGCATGAATAAGTGATAATACAGATTAAGATCTCGAATTTGGCT GGTTCTGAAAATGGGTTCTCGGATTCAGCTTCTGGGTCTGTGTTTGTTGAGCTTCACTTTTCTTTTTGTGAACACACTGA GTGAAAAAGGGACTGTCACCATTGATGGGAAATCTGCAATCGGAAACATTGATGATGATTTTGTCTGTGCAACTCTGGAT TGGTGGCCTCCTGAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGTATTTTTTTCTCT TTTTTCTTTACCAAATGTTTTTTTGCCTTTTTGGGTTCTTAGTTCCAACACCAGAACTATTACTTACTAATAATGGTTGT TCTTTCTTTTTATGGTTTGATGTCATGCATCCTCTGTTTGATGATTGATTTTTTGATTTTCAGAATGATGTTCCAATCTG AATGCATGTTTGGATCTCTTAATTAGCTCAGCTGAAAAATTAATTTCCGTAAAAATTACAATGTTTTTTTGCTGTACTAT CTTCTCATTGTTTGTGGAGAAAAAGTTTATAATATTCTCCCCACATAATCATTAGTATATACTGTTTTCTTGTAATTAAT GACATTCCAGACACAGGTCACTATCTTTGCCAGACTCTGTTTCTGGGATGAGTTTTAAGTTTTCAATCTTTATTTTCAGA GTTAATTAATTAATTGACTGAGTCAATAATTTGTTAAGTTAGAATTGATGATTAACTTTTATTTTTCATCTCATGCAGGA CCTGAACAACAAGATTTTTCTAAATGCAGTGAAAGGTAAGAGAGAATTTACATCTCCATTGTTGTTATTAAAATGGCATC AGTTTAAATTCCTTAATTACTTTATTCAGATGATTGCTTTGAAAGCTTATCAAGGTATCTTTGCTTGCAGCGTTTTCACC GTTGAAACTAAGATTAGGTGGCAGTTTGCAAGATAAGGTAAATTATGGAACTGAAGATTACCACCGACCATGTACTCCTT TTGTTAGGAAACAATCTGAAATGTTTGGCTTCACGGAAGGGTGCCTCCCAATGAATAGATGGGATGAACTAAACAAATTT TTTGCAAAATCAGGGTAAAACTCAGCTCTCCTTTTAGTTTGTGTGTATGTATCTGTGTTTTGGGACTAATAGTTTGGATT TCTGTTGGGTGAATGTAAAGCACATTCGCCCAATCCAACAAGTGCATTCGTTGTGGTGCTGAATGTTGTTTGAACTGAAA ACCAAACAAGCACTAGGTTCGCCTTGTTGACTATTGGAAACCATGATTTTTACTTGTTAACATTGCTAAACGGTTTATTT CAGGGCTAAGATTATCTTTGGTTTAAACGCTCTTGCTGGAAAATCAATACAATCTGGTTCTGCCATAGGACCTTGGAACT ACACTAATGCCGAATCCTTTATTCGATACACTGTTGGAAAGAACTACGCCATTCATGGATGGGAACTTGGTATGTATAGT CATGCTGCTATTAGAAATGCCAATGTTGCACTACACAATAAGACAAGTTGAAAATGATGTTTTTGTCAAAAAAGGTCATA AATATTTATTGTTGATACATGTGGTCTTCTACAATATCTTTCAGAATCAACTAATCTTTTCTGTATCAAGGCGTTTTAAA CAAAATCCTTCTTGACTGAGTTCTTTTCAATGGCAGGCAATGAGTTGAGTGGTAATGGAGTGGGAACAAAAGTTTCTGCA GACCAATATGCTTCTGATTTTGCTGCTTTACGAGCAATAGTTGACAATGCATATCGAGAGATTCAGCCAAAGCCACTAGT CCTTGCTCCTGGAGGTTTCTTTGATGCAGCTTGGTTCAAGGAATTCATAAGCAAATCGGGTAAATCTATAGATGTCGTCA CCCACCACATTTATAACCTTGGAGCAGGTATGTTTCACCACATTGGCTGATATTTTTCCAATTTCCATGAAGTTGATTAC AATTGAAAGCTACTTTATCTTGTATACAGGAGTTGATGAGCACCTTGAGGAAAGAATTCTTAATCCTGCCTCTCTTGATG GTATTGCAAGCACATTCAAAGATCTCAAAAGTGTACTCCAAAGTACAGCAACCTCAGCAACAGCGTGGGTTGGCGAGTCA GGAGGGGCTTACAACAGTGGCCGGCATCTTGTATCCGATACATTCTTGTACAGTTTCTGGTTAGTTCTGACTCCCCATGA TTTCGATACCTTTAGGGTGGGTTCCTTAGAACTGTTTTGGCTGATGTTAATGCATCATAAACAGGTATTTGGATCAGCTT GGCATGTCGGCTTCTTACGACACCAAAACATATTGCAGACAGACTTTGATTGGAGGAAACTATGGTTTACTAAATACTAC TACTTTCCTACCGAACCCGGACTACTATAGGTACTGAATATTGAATTTCACAGTCATGTTTTCATTGCTAAGTCATGAGA TGGAAAAAAATCATAAACAAATTTGTTATGGACTAAACTATTGAAGTATGAGCTGCATAGTTATGGACTAAACTTGGTTC AGATCTAGTTTTTCATTCTTCTTGAGCTGATATGAACCCACATGTGCTACATTCTTTAACATTTATGTGGCAATGTGCTT TCTTCTCTGCAGTGCTCTTCTATGGCACCGACTCATGGGAAGGAGTGTGCTATCAACTACCTTCTCTGGGACAAAAAAGA TACGAGCTTATGCTCACTGTGCAAAGCAATCTGTGAGTGAAATTTAGTGTCACCATTATCAAGTGGATATTTAGTATTTA CTATCCATGAAATCTGATTTAATAATCTATATCTTACAGAAAGGAATCATAATATTATTGATCAACCTGGACAGCAGCAC AGCAATTGAAGCAGAAGTGACCTTAAGCGACAATAAATTTCTGCGGCACAGAAAGATGGCTGATAATTCAAAATTGACGG AACTTCCTCTCCGTGGTGCAAGCGGAACAGCTAGAGAAGAGTACCATCTAACACCAGGGGGTGGGGATATACATAGCCAA ATCATGGTGCTAAATGGAAACGCTCTAACTGTGAATTCAGCTGGCGATATTCCTGCTTTGGAGCCTTTGTTTGTGAACTC ATCAATGCCAATAACGGTTGCTCCTTTCTCTATTGTATTTGCTCATATACCTGATGCTGTTGTTGCAGCATGCAACTAGC TAGCTAGGTGACACACCCCACGAAACCAAAAAAATGGTTTCTCTTGGTGATTGAGCAAACCAAAAGGAAATATATGTTAG TTCTCAATTTATTGTTGAAGAACAGAAAACCAATTTTTTTTAGGTTAGAACTAGGATTTTGATTGTTTTCCATTTTGTTT ACTTCCCAATGTGTACCATTGAATTCATTACGATGATAAATTGCAAATTGAAAGTGACAAATAAATTGAGATTGAGAATT GGTATCCTTTGGTGAG
CDS sequence (LotjaGi6g1v0210100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTCGGATTCAGCTTCTGGGTCTGTGTTTGTTGAGCTTCACTTTTCTTTTTGTGAACACACTGAGTGAAAAAGG GACTGTCACCATTGATGGGAAATCTGCAATCGGAAACATTGATGATGATTTTGTCTGTGCAACTCTGGATTGGTGGCCTC CTGAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTGAACAACAAGATTTTTCTA AATGCAGTGAAAGCGTTTTCACCGTTGAAACTAAGATTAGGTGGCAGTTTGCAAGATAAGGTAAATTATGGAACTGAAGA TTACCACCGACCATGTACTCCTTTTGTTAGGAAACAATCTGAAATGTTTGGCTTCACGGAAGGGTGCCTCCCAATGAATA GATGGGATGAACTAAACAAATTTTTTGCAAAATCAGGGGCTAAGATTATCTTTGGTTTAAACGCTCTTGCTGGAAAATCA ATACAATCTGGTTCTGCCATAGGACCTTGGAACTACACTAATGCCGAATCCTTTATTCGATACACTGTTGGAAAGAACTA CGCCATTCATGGATGGGAACTTGGCAATGAGTTGAGTGGTAATGGAGTGGGAACAAAAGTTTCTGCAGACCAATATGCTT CTGATTTTGCTGCTTTACGAGCAATAGTTGACAATGCATATCGAGAGATTCAGCCAAAGCCACTAGTCCTTGCTCCTGGA GGTTTCTTTGATGCAGCTTGGTTCAAGGAATTCATAAGCAAATCGGGTAAATCTATAGATGTCGTCACCCACCACATTTA TAACCTTGGAGCAGGAGTTGATGAGCACCTTGAGGAAAGAATTCTTAATCCTGCCTCTCTTGATGGTATTGCAAGCACAT TCAAAGATCTCAAAAGTGTACTCCAAAGTACAGCAACCTCAGCAACAGCGTGGGTTGGCGAGTCAGGAGGGGCTTACAAC AGTGGCCGGCATCTTGTATCCGATACATTCTTGTACAGTTTCTGGTATTTGGATCAGCTTGGCATGTCGGCTTCTTACGA CACCAAAACATATTGCAGACAGACTTTGATTGGAGGAAACTATGGTTTACTAAATACTACTACTTTCCTACCGAACCCGG ACTACTATAGTGCTCTTCTATGGCACCGACTCATGGGAAGGAGTGTGCTATCAACTACCTTCTCTGGGACAAAAAAGATA CGAGCTTATGCTCACTGTGCAAAGCAATCTAAAGGAATCATAATATTATTGATCAACCTGGACAGCAGCACAGCAATTGA AGCAGAAGTGACCTTAAGCGACAATAAATTTCTGCGGCACAGAAAGATGGCTGATAATTCAAAATTGACGGAACTTCCTC TCCGTGGTGCAAGCGGAACAGCTAGAGAAGAGTACCATCTAACACCAGGGGGTGGGGATATACATAGCCAAATCATGGTG CTAAATGGAAACGCTCTAACTGTGAATTCAGCTGGCGATATTCCTGCTTTGGAGCCTTTGTTTGTGAACTCATCAATGCC AATAACGGTTGCTCCTTTCTCTATTGTATTTGCTCATATACCTGATGCTGTTGTTGCAGCATGCAACTAG
Protein sequence (LotjaGi6g1v0210100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSRIQLLGLCLLSFTFLFVNTLSEKGTVTIDGKSAIGNIDDDFVCATLDWWPPEKCDYGRCSWGLASLLNLDLNNKIFL NAVKAFSPLKLRLGGSLQDKVNYGTEDYHRPCTPFVRKQSEMFGFTEGCLPMNRWDELNKFFAKSGAKIIFGLNALAGKS IQSGSAIGPWNYTNAESFIRYTVGKNYAIHGWELGNELSGNGVGTKVSADQYASDFAALRAIVDNAYREIQPKPLVLAPG GFFDAAWFKEFISKSGKSIDVVTHHIYNLGAGVDEHLEERILNPASLDGIASTFKDLKSVLQSTATSATAWVGESGGAYN SGRHLVSDTFLYSFWYLDQLGMSASYDTKTYCRQTLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGRSVLSTTFSGTKKI RAYAHCAKQSKGIIILLINLDSSTAIEAEVTLSDNKFLRHRKMADNSKLTELPLRGASGTAREEYHLTPGGGDIHSQIMV LNGNALTVNSAGDIPALEPLFVNSSMPITVAPFSIVFAHIPDAVVAACN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| PANTHER | 21 | 529 | 509 | 8.1E-256 | – | |
| PANTHER | 21 | 529 | 509 | 8.1E-256 | – | |
| Phobius | 25 | 529 | 505 | - | – | |
| Pfam | 27 | 341 | 315 | 1.3E-153 | ||
| SUPERFAMILY | 40 | 385 | 346 | 5.37E-63 | ||
| Gene3D | 66 | 383 | 318 | 9.6E-68 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi6g1v0210100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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