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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0210200 |
| Transcript ID | LotjaGi6g1v0210200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LEM3 (Ligand-effect modulator 3) family protein; TAIR: AT5G46150.3 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q67YS6|ALIS2_ARATH Putative ALA-interacting subunit 2; TrEMBL-Plants: tr|A0A151R120|A0A151R120_CAJCA Putative ALA-interacting subunit 2; Found in the gene: LotjaGi6g1v0210200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50766330..50770917) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTATTTGACTTTTTTGTTTCATCTATTTTCTTAATGGAACTTGTACTGAATGCCATTGTGGTGGTTTTGCAGCTTTC TATCAGTTTACACAGCAGAACCTTCCAGCATGTAAACCTGTCCTTACACCTAGAGCAGTTAGTTCTTTGACAACACTTTA AGTTTCATGACACCTTATTCTACTAAATGTGCATACCAAGTCTCAATCATGTTCTGTGCAGGTCATTGCTACGTTTCTAT TGATGGGTTTCATTTTCATTCCTGTTGGACTTGTTACACTTCGTGCTTCGTATAGTGTATGAATATTTCTCCTTCCTTCA ATGTTTTGCATTTAAATTTTTTCGTTCTGCCTTCAAAATCCTTGTGCTTACAATATTAATTAACCTATGGATTGTAGGTT GTTGAAATTGAGGACAGGTATGACATTGATTGTGTACCGGATCAATTTAAAAGTAATAAGGTCGCATATATCAAAGATGA CTCAATCTCCAAAAACTGTTCACGATTCTTAAAGGTGATGATTCATTTTTTGATTGATCACATCATTCATTGATTATTGC TTCGGGGTTAAGTGTTGTACAATAAAATAAATTGTTTCCTCTTAGTTCCATACTTCTCCATTTAAACGAGCGGTTGGCAT TCTCTTTCTTAAACTTTTGTTCTCTCTAACTCTACCCAAAAGTTAGCTCATGATACTAGCCTTGAGGTCGGATAGATTGC ACTGGGAAATCCACAGGGCCATGTTGATTTTTGTACAGTGGACGGTGGCCCAATATCAAATATAGGATAGAATCTGATAC CATCTTGAATTTGGGTTAGACTTAACTCTACCTCTGAAGCTAGCTTGTGCAGTGAGGATGGTGTGATGTGGGACCTCAAC ACAGATACCATCTTAAACTTGAGCTCACTGTTTGGGAGTTAGGCTTAGCCCAAATGTTAGACTCTTAAAATCTTTGGATG TTGCCACAGTATTCTCAAAGTTTTCTATTGACTGCTTCAGTGGCTTTGCCAATTATTATTGTTAGGTTTGGTTGAACATT GGACAACAGATTTAGATGTAATAGATGGTGGTCTCATTGATATTTAGAAAGTTATTACTTCTTAAATTTATCCGCTGCTC TCTGGATGGTAGCATTGTAGGTTTATACTCCTCATCACTTACTGCCTTTTCTTCTCAAAGTATTCTTAGTATTTCATAAT AGTTTGGTTGAATAAGGAGTAGGAGCAAATCTTCATAATCAGATGCAACTTTTATTGCTCAATATGTTAGAAAAGTTCTC TTATTGGCTTAAATTCACTTATTTAAGTTGAAGTTTACATATGCAAGTAAGTTTTGCATGTTTATATGTTCTGATTCAAG AGAAATATTAGTGAATCCTTAACTTTTAATCACACAGCGGAGGTTCTATTATACAGACCAAATGTACAAGATACCCTGTT TATGTTGCTCTGGTATTTAAAATTTCCAGTTACTGTTCTGTTTTGAAGACACAAATTAAACCATGTAAACTTTCGAAACT TTTCTATCTAAAATTTAATTGTCAAAGTTCCTGAAATAATATCTACCAAAATTCTTTTTTGTTGGAAATTAAACTTCCCA TACTTTTCTGTGATAGAAATATAAAATACTTATCAGAAAGAAGACAGAAAATAGAAACAGCTAGAATAAGAGACAAAAGA TTATAAACATCCTCCTGAAAGGGAATAGGAAAAATCAAGAGCAAAACAATGGAGACTAACTTATAGAGTAATACTAATTT AACCATAGGTTTCTTTGTGACTTGGATGCTGTGTTACAATTAGATTTTGCAAGCAGAGATGAGAAGATGGAAATTGCCTA GAAAGTTTAGGAACAAATACTCGCCCCTTATCATGCTTCCGATAGTGGCATTGTGTGATACATGGATGGGTGAAACATCA GACTGGGAATGTAGAAAACTATATGTATTTCATATCGTGCTAAGAGTTTTCCTCCCTTCAAGAGAAAAGGAGGCCTGCTG TTGCTGATATTATGAATCACGGGAATCTTATCAGGTTATATATTGTGTTGGCTTATGTCATTCTTCAAAAGAACATATTA TTCTATGATATTTACAACTACGTCCATGCTTTTCTGCTGTAACTTCACTTGCTTTTTCCTCCCGCATTTAATCATAATTA AGAATTTTGGACCGGGTGCTTAACTGCTGATATCTTTGTTGGGAAAGTTACTGATACAGTTGATCTTTTCACCGTCCCTT AATCGTGTTTTAAAACTTGTTTGTAGGTACCTAAGCCAATGAGAGCACCGATTTATATCTATTATCAGCTTGATAACTAT TACCAGAACCACCGACGGTAAGGATTCTTTATTTTCGTATTTTAAATACAGTGGATAAGTATTCTTTTGAGGAAGTCATT GCTTCACCTTTTCATCTTTTATCCTGTCTCTTTCGCGTTAATCTCTATTTATTTGTTTTCTTTTGGTTGATATACAAGTT ATCTATGTACAATTTATTGGTCCTCTCAATATTATAAATCATTTATTTTGAGGCAATGCTACTGTGTGTCTGTTCAGTTG AGCAAAGTTGAATATATGCCCTGTTATGAGGCCAGTTGGTTTCTTGTATGTATTATAATTTTTTTATTAGGTTGTATTTG GACCTATTGACATGTGTCCTAAGCAACTCCGAATTTGTTTCCCTCAAGTTTAAATTTATAGAGAATTTATGTCCATTAAC TATTCACCAATTGTTTGAGATGAACTATAGGTCCTCTTGCTGGTTGTTAAATTTTGAAAATTATTGCTAGCATCTCATAG ATTTATTGTCTTTGAATTTAATATTATGTGCTGTATCTAAAAGCATTTCAGGTCCAGTGAATGTCTCTTAAATTATAGTC AATATAATGAAATATTTTTCTTTATTCCTGCTTCATTCCTTTCCACTAAAAACATAAATCTTCTATATTTACATTTTCAT GCTTTTATTTCTCAACTGCTCATTCAAACCTTCATAATTAATCCAGGTATGTAAAAAGTAGAAGTGATCAGCAACTCTTA CATGGTCTTGGATACAATCACACCAGTTCTTGTAAACCTGTAGAGTCTTCTGATAATCTTCCAATTGTACCTTGTGGGTT GATAGCATGGAGTATGTTCAATGATACATATATGTTCAATCGTGGGCCAACAAAATTGAAGGTCAATAGGAAGAACATTG CGTGGAAGAGCGATCGCGATCACAAATTTGGAAAGCATGTTTACCCGTTTAATTTTCAGAATGGGACATTGATTGGGGGT GGAAAGTTGGATCAAAGTGTTCCTGTAAGTTCTAAGCTTTTGAATTGTATATGGAGTTATGGACACTTTTTTTTCATCTT TTTGTCGTCATTTCTTCTTGTCATGGCTTGTCTTTGTTCGTATTTAAAATATCTTTGTTTCCTGACCTTTGCCTAAAATG TTAATTTATTTGGCAGAATCATAATTCCCTGATAATTAAAAATACTGATTCCCAGTTGTTTAAAAATGATAGCAGTGTTT GTGTTTCCATGCATTGATGTTTACTATCATCTCTGTTTGGGGGGGGGGGGGTAGATGTAAAATCAACATTTGGCAGAATC ATAATTCCCTGATAATTAAAAATACTGATTCCCAGTTGTTTAAAAATGATAACAGTGTTTGTGTTTCCATGCATTGATGT TTACTATCATCTCTGTTGGGGGGGGGGGGGGGGGGTAGATGTAAAATCAACATTACCACCATAAGTGGAGAGTTTGTTTC TTCATTTAGAAATTAGAATCAGTGACAAGTGGTGATAATGGCCACAGCCCTACCACAACCCTCACCCTTAGATTATCTTT ATGTGTGTGAATAAAAAATGGACAGTTAATATTCTATAGCATGTGTGCATGGTTTCCTCCATAGGTATACTTCTTTCTTG TTCTTTTTTTTTCTATTGGTTTGAAATTAGTTGCACCACTTGAGAATGTATGTAAAAGTGAAATACTAATATTCAGTAGT AGCATATGATAGGTCAACCTGAAGTTGAAAGTTGATGTTTGTGTGGCGGTTGGCCGAGGCATTTCTTGTACCTAAATCTT TTTCTCATTAAAAGTTTCTTTATATACTAATTTCGTCAATAATTCTTCTCTGCTGATTTGGTTTATGTTATGCTACTTCT CTCTGTTGGCTATTGTGATTGCCATATTTCAGCTAAGTGATCAAGAAGATCTGATAGTTTGGATGCGTACTGCTGCTCTC CCCAGCTTCCGAAAGTTGTATGGAAGAATTGAAGAGGATTTGGATGCAGATGATGTTATAGTCGTCCACCTAGAGAACAA TTATAACACTTACAGTTTTGGTGGAAAGAAGAAGCTTGTTCTGTCGACAACAAGCTGGCTGGGAGGAAAAAATGACTTCC TTGGAGTTGCCAATTTACTTGTTGGAAGCTTTTGTATATTGATCTCGATCATCTTCCTGTTGCTTCATGTGAAAAATCCT AGGTAATAACAGTGTCCATATTTGCCTAATTACTTTATGGTTATTTAGTGCACCTTGACCACTGTATCATGTAGTTGGCT GGAGGATGCTGAACACTGCTATTCTTGA
CDS sequence (LotjaGi6g1v0210200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCATTTTCATTCCTGTTGGACTTGTTACACTTCGTGCTTCGTATAGTGTTGTTGAAATTGAGGACAGGTATGA CATTGATTGTGTACCGGATCAATTTAAAAGTAATAAGGTCGCATATATCAAAGATGACTCAATCTCCAAAAACTGTTCAC GATTCTTAAAGGTACCTAAGCCAATGAGAGCACCGATTTATATCTATTATCAGCTTGATAACTATTACCAGAACCACCGA CGGTATGTAAAAAGTAGAAGTGATCAGCAACTCTTACATGGTCTTGGATACAATCACACCAGTTCTTGTAAACCTGTAGA GTCTTCTGATAATCTTCCAATTGTACCTTGTGGGTTGATAGCATGGAGTATGTTCAATGATACATATATGTTCAATCGTG GGCCAACAAAATTGAAGGTCAATAGGAAGAACATTGCGTGGAAGAGCGATCGCGATCACAAATTTGGAAAGCATGTTTAC CCGTTTAATTTTCAGAATGGGACATTGATTGGGGGTGGAAAGTTGGATCAAAGTGTTCCTCTAAGTGATCAAGAAGATCT GATAGTTTGGATGCGTACTGCTGCTCTCCCCAGCTTCCGAAAGTTGTATGGAAGAATTGAAGAGGATTTGGATGCAGATG ATGTTATAGTCGTCCACCTAGAGAACAATTATAACACTTACAGTTTTGGTGGAAAGAAGAAGCTTGTTCTGTCGACAACA AGCTGGCTGGGAGGAAAAAATGACTTCCTTGGAGTTGCCAATTTACTTGTTGGAAGCTTTTGTATATTGATCTCGATCAT CTTCCTGTTGCTTCATGTGAAAAATCCTAGGTAA
Protein sequence (LotjaGi6g1v0210200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFIFIPVGLVTLRASYSVVEIEDRYDIDCVPDQFKSNKVAYIKDDSISKNCSRFLKVPKPMRAPIYIYYQLDNYYQNHR RYVKSRSDQQLLHGLGYNHTSSCKPVESSDNLPIVPCGLIAWSMFNDTYMFNRGPTKLKVNRKNIAWKSDRDHKFGKHVY PFNFQNGTLIGGGKLDQSVPLSDQEDLIVWMRTAALPSFRKLYGRIEEDLDADDVIVVHLENNYNTYSFGGKKKLVLSTT SWLGGKNDFLGVANLLVGSFCILISIIFLLLHVKNPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 277 | 277 | 9.2E-172 | ||
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 277 | 277 | 9.2E-172 | – | |
| PIRSF | 1 | 277 | 277 | 6.5E-113 | ||
| Phobius | 3 | 13 | 11 | - | – | |
| Pfam | 14 | 277 | 264 | 2.3E-84 | ||
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 248 | 230 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 249 | 271 | 23 | - | – | |
| Phobius | 272 | 277 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0210200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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