Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0212400.2

Overview

Field Value
Gene ID LotjaGi6g1v0212400
Transcript ID LotjaGi6g1v0212400.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Transporter; TAIR: AT1G30220.1 inositol transporter 2; Swiss-Prot: sp|Q9C757|INT2_ARATH Probable inositol transporter 2; TrEMBL-Plants: tr|A0A151SI54|A0A151SI54_CAJCA Putative inositol transporter 2; Found in the gene: LotjaGi6g1v0212400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:51012850..51019915) extracted from Lotus japonicus Gifu genome v1.2.

TCCTCCAGAATATTAGTGTGTCCAGAGTCCAGACTCATCATCTCAACGGTTCCCCCCATTATAAATACACTACTCATCTT GATCCTCCATTACTCCATCCACAACACTTGCTCTCAATTCTCAATCAAGCAAGGACACAACACAAAACTAACGTTGTTGA AGAATCCTAGTATAGCACTCTTGTTCTGTTCTTCCTCTGTTTCTCTGTTCTGTTTTTCAACACCATGGAAGGAGGTGTAC CAGAAGCTGACATGTCTGCTTTCAGAGAATGTTTATCTCTTTCATGGAAAAACCCTTATGTTCTTCGCCTTGCTTTCTCT GCTGGAATCGGTGGCCTCCTCTTTGGCTACGATACCGGTTAGTTTAATTTCTAACTAACTAACTAACCAACAAAATCCCC TGTTACATTTATTCCCCTGTTTCAAATCCTCTGTTTCATCATACATATCACATACCAAAATTACTCATCTACTCTAAAAA TCAAAATTATCATGTTAATTCTAACTTCTAAGTGTAATTTTCATCTGGGTCATGCTACAAATTTAAATTAAATAAATATA TAGGATAAAGTTTCATTTTATGTTTTTTCTTAGCATGTGATGTATGCGCATATTATTGTTATGTGTGCTATGGTTGATAT GTAATTGGTGGGGTATCTGTATGTATCTGCAGGAGTTATATCTGGGGCTCTTCTGTATATCAGAGATGACTTCAAAGCAG TAGATAGAAAAACTTGGCTTCAGGTAATCTCTCTCTCGCTCTCTCTTGAAAATTGAGATAATTCATTAATGAATGATCTT ACTCTCCCAATCAACTCAAATCACCTCTTGTGAACCCCAACCTACTTGAATGGACATTAATGCCCCCCTCACCTCCTCTG TTCACAACCACCAACTTGCTGTAAAAAAGGACAAAACTTGGCATCGTTTTCTATGTTACATGTTCTTTGGACATATTGTC TGTACCCTTTTTTGTGAAGAAAAAATGTATTGAAATGTGTATTATTTTTCCATTTTTCATATTTTTTTGACTAGTAAACA AAGAGGTTTTAGTCTAATTTCTTGCTGAAAAATCAACACACTTCTTAAGATAAACTCAATTATTTCCTTTTTCTTTACAT GATTTCTTCATAATTTGACTAGCAGCTTGAGAAATGCTGACTCTGTTTTATTTTTTTGGTAGTACATAAAATACTGACTC TATTTCTCAGGTGATAATTGTTTTTTTTTTTTAATTGCAAAGTTTCATGATATATATCATAGTAGATTTGTATTAAGGTT GTGTTTTTTAATTTGAGTTCACAGATTTTCAAATCGGTTTCGGCGGATAAAAAAACTACAGGATCCGGATTCACCGGATG AGATCCATTAAATATTTTGGTTTGGATATATTCACATATTTATTTATTTTTTAATACAAAATATTAAATACATTTTTAAA GTAATAAAAATATTAAATACGTGAACCCAGAGTTGTTTTTTCTTCCCACGGTGTCTTTAGAGATAAAAAAATGTTAATCT CCTTGACTTACACGCTGAATATCTGCCTGATAAATTCAAAGAAAAGAGTTAAGGATGCTGAAAACGATATATATCTAATT ACTTTTTTTGGTACACGATATAAATCTAATTACTACTATCAAAATATAGATATAGATATAGATATTTTTTTTTGGTATCT AGGTATCAGTAGGATTTGAACCTAGGATTTGAGAAATTTTAATCGATCAAGTACCATTTAGGCTATTAATACTAGTAATA TAGATATAGATATAAGCATAAGTAAATTTGTTTTGGTTACAAATAAGCATAAGTAGTTGAAATTACCTGTCTTTTGTGGA TTTTCATTTTTAGTTAAAATTGAAACGTTAACAATACATTTTTCCTTCAAAAGTAATAATACTTTATCTCAATTACTACT TTTAATGTGCTATTTACAATGAAGTTAAGAAAGAAAAAAGATGAGGAACATGTGATTTGGTTTCAAAATAAATGTCTGTG GTCTAATAGAAACATGCCACATATGAACCCAAAAAAATGGAAAATAAGTGTCCTAATCATGTCATGCTTGAGCAAGTGCT TGATTTGCCCAATAGGGGGAGGTTGCCCACTTACCCAACAAGGCAAATTGAACACCAGCTAGCTACTAAACCATTCAAAA CCAGGCAATTCCTATTATGTTCTTAACCATCCTCAATCGTCAAATCAAATAATTAAACAAAAAAATAGATGGGACGTTTT AATTTTAATATGATTCTACCATACAATAACAGCTCATGCTACATCCAAATCCAATTCAGATTTGGTTAGTTAAAAAAGGA AGTATGCCTTTAACATACACAAGTAAAAACTTGTGTAACATTGCACAAGCTCCTTTTGACCTCTTATAGCAGGTTTTCCG GTTTTTTATTTTAAAAAAAATTCAAAATACTTATTTTATTAATCACAATATTTATGCTAATCTTTCTCATTATCACCTTC ATCCTCTAACAAAACCCTAGCTGTCACCTCCTTCATCTCTCCCATGACCTCGCCGTCACACATTCATGGCCGTGCCGCCA CCACCACTCCTTCTTACTCCTGACCTCGTTTCCTTCGTTCTCAACCGCGCCACCGCCATGCTCTTCTGTGTTCAGCGCCG CCGCCACGCTCCTCCTCTGTTACTGTGACCGGCTCCGTCGCACGCTCCTCGCCGGTTCCAGCGCCGATCTCCCTCACGAG GTCCGATCCGCCGCTTTTTGGTTGTGAAGCTTCTCAGATCTGGTTTCCCTGCGGCGGTCTGCGGTTTGGATCCCGCGGTG GTTCTGGTGGACTGAGGGGAGCATGGAGGTTTACGAGATCTGGAAATGAAAAATCCAGATCTGTTTTTGCAGAGATTGAA GAACACCATGATGAAGATGAAGACAACGGTGAATCTCTTCAATTATAGTTGTGTGGTTCCTTTCTTATATGATTGTCATT GTGGGGTATTGTTGTTGGTGAGGGATCTGAGGAGGAAGAGGGCTTTTTTGTGACATGGGTGTTTATCATGCTCTGCAAGA TTATTGCATGTTTCTATGCTTTTGTTCACCTGTCCTGGATTTTAACTTGATTTGCTTGAGGTGGTTGGTATTTTTCAATA TATTAATGAAATCATGCCAATAATATAAGAAAGGAACCGCAAGAGGGAATGAAGAAGTTTCGTATGATGAATGAAAAAGT GGGATGACGAACATGATTTGAGGATGAAGATGAACTTAGATGTGATTAACCTAAATCCTTAATTAATTAATTCACTAATA AATATTTTTTTTGTTTTTGAATTATTTTTTAAAAAAAAATATTGAAAACCTGTTACCATGGGTCAAAAGGTGCTTGTGTA ACCTTACACAAGTTTTTACTTGTGCATATTAAAGATTTCCATATGTTTGATTTTTTTAAACAATGGTTAGAGTTTGAGAT GGAAAAAAACTATGAAGTGGATATTCAGTTCCCATCTCAAATAACATATCAGAAAAAATCCAATCCAGATTTCCTTTTTT CACACTTCTATTTATTTTAATTTTGTTGATGATCAAACCAATTCTTTTTGCGATTATGTGTAACTCAATTGAGTTCATGA TTTGAATTTCATTCGAAAATTAGGGCGAAGCCAAAATCATGGCAGATAGAAGCAAAAGCTAAGGAAAATTTCTTTTATCT ACCATGATTTTGGCCTCATCATAGTTTTCGAATGAGTTTCCAAACATGCACGAAAGCTGTTAAATGGGATTCATCAAAAC CTAGAGTGCAGTCATGGAAATCATTCCTTATGCAATAGCTCTTGAGTCAATTTTCCTTTTCTAAATGAAAGAGCGAATAA AAAATGTATGATTCTTTCTTTTTGGATTGAAAGTACTTATTTTGGTGTATGTAATAGTGAATCAATCATGGAAAAATGTT TCAGGAAGCCATAGTGAGTACAGCAATTGCTGGAGCAATCATAGGAGCTGCAGTTGGAGGATGGATCAATGACAGGTTTG GAAGGAGAGTAGCAATAATTATTGCAGATACCCTCTTTTTAATAGGGTCTGTAATCATGGCTGCTGCTCCAAATCCAGCT ATTCTCTTATTTGGTAGAGTTTTTGTTGGATTTGGTGTTGGCATGGCTTCAATGGCTTCCCCTTTGTACATTTCTGAGGC TTCCCCAACTAGAGTGAGAGGAGCACTTGTCAGTCTCAACAGTTTTCTTATAACTGGAGGACAGTTCCTTTCCTACCTCA TCAACTTGGCCTTCACTAATGTATGTACAATTCTCAAGTTTGAAACACTTGTTTATACAATGCTTGATAACTGTTTGTAG AAATGTCACACTTTTGTTTATTTTATACTATGTTACTTTAGATGCATGATAGATTGCTTTAAAAAAATGTGTTTTGTTTT TTCAAAATCCACATGAAAAGTATGTTCCAAAGAGAATGTTATTACTTATATCATTGTTATTTTTTTTTCGTCTGAATTTC ACACCTTTTGTTTGGTGATGATGAGCTAAAAGAATTTGCTGCTGGTTTTTGAATTTTCACTCAGGCACCAGGGACATGGA GATGGATGTTAGGGGTAGCAGCAGCACCTGCTATAATACAAATTGTGCTGATGTTGTCACTCCCTGAGTCTCCTCGTTGG CTGTACCGGAAGGTTAGTTCTTCGTCACTAGTTATAGTGTGTTCGGATCAGCTTCTCTTTTGTAAGAATCACTTTTGAAT TCAGAAGTTTCTCCCCATAATAGATTATGACTTCAGAATCAATTGTAAAAGGGTTTCCAACTAGTCATCAAGCATCACCA AATTTTCAGTCAATGAAATTCCAAAAGTCTTCACTGTTGTTCCTATTTTGATTTTCATGTTTTTTCTTTCCCAATTTGAA ACAGGGTAGGGAGGAAGAATCAAAATCAATTCTGAAGAAGATTTACGCTCCAGAGGATGTTGACGCTGAAATTGAAGCGT TAAAGGAATCAGTTGAATCTGAAATTGAGGAATCAAAAACATCAAAGATAAGCATGATGACACTTTTGAAAACCACAACT GTTAGAAGAGGTCTTTATGCAGGGATGGGACTCCAATTCTTCCAGCAGTTTGTGGGAATCAACACTGTAATGTACTACAG TCCCACCATTGTTCAACTTGCTGGTTTTGCATCTAACAGGACAGCCCTGCTTCTGTCACTAATCACCTCTGGCCTAAATG CTTTTGGTTCCATTTTGAGCATATATTTCATTGACAAGACTGGCAGAAAAAAACTTGCCCTGATCAGTTTATGTGGTGTT GTGCTTTCCCTGGCTCTTCTTACTGTCGCTTTTCGTGAGAGTGAGCTTCATGCTCCAACAGTTAGTGCCATTGAAACCTC TCATTACAATAACACATGCCCTGATTTCAGAGCAGCTGTGAACCCTGGTAGATGGACTTGCATGACTTGCCTAAAGGCTT CACCATCTTGTGGTTTTTGTGCTGCTTCTCCTAACAAGGTAAATCTATTCTACACTCACATTTTACCAAAACCATACAAT ATTGCAAGAGTATATCTATAACATATTCATATTTTGTCATGAACAAATTATCAGAAAAGATTGGGTAAAAGATGCGTGAA TGATTTTATATTATGTTTCTAAAACAAACCCTCACGTATGAGCTAATTAGGCTTTAAGCGCGAACAATGCACGGATTTGA ATTTAGTGCAGTTGACTGCGGTCACAAATACAAGTCTTATGATTAAAGATTAGATGGGTCATATTTTTAGCATATGTTTG TACTTTATTTACTAAGATCAAATCTGAAACGTTCGATCTTAATCCAATGACTAACATTCAATGGTTGCCCTAAATGCGTC AAAAAGGACTGCAGGCACTGAAGTTTAACTTTTTTGTCAGAATAATTGGAGAAAACAATGATTGAAGTCTAGACTATTTG GTCATAGAGATTCTGATAGCATATCATGAACCAATATCTCAAAATCTAAAGCTGTTGAATATATGACATGTGAATGATTT TATATTATATTTTCTAACATATTTATTGACATTACTATAAATGAAATTTGCAGCTCTTACCTGGGGCATGTTTGATTTCC GATGACACTACAAAGGATATGTGTGGAAATGATCACAGGGCATGGTACACTAGGGGATGTCCAAGTAAATTTGGTTGGGC TGCTCTAGTTGGGCTTGCTCTCTACATCATTACCTTCTCACCAGGGATGGGGACAGTTCCATGGGTTATCAACTCTGAGA TCTATCCCTTGAGGTATAGAGGGGTTTGTGGAGGAATTGCATCCACCACTGTTTGGATTTCCAACTTAATTGTTTCACAG TCTTTTCTGTCCTTGACACAAACTATTGGGACAGCATGGACATTCATGATGTTTGGAATTTTGGCTGTTGTAGCCATTTT CTTTGTCATTGTTTTTGTGCCTGAGACCAAAGGGGTTCCAATGGAGGAAGTGGAGAAGATGCTGGAACAAAGATCTCTGC AGTTCAAGTTTTGGCAGAAGAGAGATTCTGGCTCTGAGAAGCACTAACTCAGGAAAAAAATTACTGAGTTGAATTTTATG ATTAGTTTTATGTAGCTTTAAATAGTGAAGCATGTGTCTGGTGTATTTGGCAATGGTTTTCCTTGGTGTAAGGTTTGCTG GTAGTTTAGCATTTTAATTAGGTGAAATGTGTAGTTAATTAGTTGGATTGCTGAAAATCCTTATCAAATCCATAAAGGAT TGAATTGATAATACTCTTCACTAAAGAAATAATAAAATGTATTGACTATTAAGTGAGTTTTATTGTTCTTATTTTTTCCT CTTTTGCCCTGGAACTGCAATATGTCAACATCATTAAGTGTATATTTTCCTTCTCAAATGCAATTTGTGAATTGGATCCA CAACCCACTGAAGCATGGCCGAACAAACAATCACATCAGTTGGCCCATTATATAACCCCAAAGCAACCTTTTCACACTCT CCATTTTCTTTGACAAAATAAAATGTTCTCTTATTTTCCAGCCAAACAAATTATATTCATCAAATAAAGTTGGAAATTAT TACACATATCATACCTCAGAAGTGGC 

CDS sequence (LotjaGi6g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGAGGTGTACCAGAAGCTGACATGTCTGCTTTCAGAGAATGTTTATCTCTTTCATGGAAAAACCCTTATGTTCT TCGCCTTGCTTTCTCTGCTGGAATCGGTGGCCTCCTCTTTGGCTACGATACCGGAGTTATATCTGGGGCTCTTCTGTATA TCAGAGATGACTTCAAAGCAGTAGATAGAAAAACTTGGCTTCAGGAAGCCATAGTGAGTACAGCAATTGCTGGAGCAATC ATAGGAGCTGCAGTTGGAGGATGGATCAATGACAGGTTTGGAAGGAGAGTAGCAATAATTATTGCAGATACCCTCTTTTT AATAGGGTCTGTAATCATGGCTGCTGCTCCAAATCCAGCTATTCTCTTATTTGGTAGAGTTTTTGTTGGATTTGGTGTTG GCATGGCTTCAATGGCTTCCCCTTTGTACATTTCTGAGGCTTCCCCAACTAGAGTGAGAGGAGCACTTGTCAGTCTCAAC AGTTTTCTTATAACTGGAGGACAGTTCCTTTCCTACCTCATCAACTTGGCCTTCACTAATGCACCAGGGACATGGAGATG GATGTTAGGGGTAGCAGCAGCACCTGCTATAATACAAATTGTGCTGATGTTGTCACTCCCTGAGTCTCCTCGTTGGCTGT ACCGGAAGGGTAGGGAGGAAGAATCAAAATCAATTCTGAAGAAGATTTACGCTCCAGAGGATGTTGACGCTGAAATTGAA GCGTTAAAGGAATCAGTTGAATCTGAAATTGAGGAATCAAAAACATCAAAGATAAGCATGATGACACTTTTGAAAACCAC AACTGTTAGAAGAGGTCTTTATGCAGGGATGGGACTCCAATTCTTCCAGCAGTTTGTGGGAATCAACACTGTAATGTACT ACAGTCCCACCATTGTTCAACTTGCTGGTTTTGCATCTAACAGGACAGCCCTGCTTCTGTCACTAATCACCTCTGGCCTA AATGCTTTTGGTTCCATTTTGAGCATATATTTCATTGACAAGACTGGCAGAAAAAAACTTGCCCTGATCAGTTTATGTGG TGTTGTGCTTTCCCTGGCTCTTCTTACTGTCGCTTTTCGTGAGAGTGAGCTTCATGCTCCAACAGTTAGTGCCATTGAAA CCTCTCATTACAATAACACATGCCCTGATTTCAGAGCAGCTGTGAACCCTGGTAGATGGACTTGCATGACTTGCCTAAAG GCTTCACCATCTTGTGGTTTTTGTGCTGCTTCTCCTAACAAGCTCTTACCTGGGGCATGTTTGATTTCCGATGACACTAC AAAGGATATGTGTGGAAATGATCACAGGGCATGGTACACTAGGGGATGTCCAAGTAAATTTGGTTGGGCTGCTCTAGTTG GGCTTGCTCTCTACATCATTACCTTCTCACCAGGGATGGGGACAGTTCCATGGGTTATCAACTCTGAGATCTATCCCTTG AGGTATAGAGGGGTTTGTGGAGGAATTGCATCCACCACTGTTTGGATTTCCAACTTAATTGTTTCACAGTCTTTTCTGTC CTTGACACAAACTATTGGGACAGCATGGACATTCATGATGTTTGGAATTTTGGCTGTTGTAGCCATTTTCTTTGTCATTG TTTTTGTGCCTGAGACCAAAGGGGTTCCAATGGAGGAAGTGGAGAAGATGCTGGAACAAAGATCTCTGCAGTTCAAGTTT TGGCAGAAGAGAGATTCTGGCTCTGAGAAGCACTAA 

Protein sequence (LotjaGi6g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKAVDRKTWLQEAIVSTAIAGAI IGAAVGGWINDRFGRRVAIIIADTLFLIGSVIMAAAPNPAILLFGRVFVGFGVGMASMASPLYISEASPTRVRGALVSLN SFLITGGQFLSYLINLAFTNAPGTWRWMLGVAAAPAIIQIVLMLSLPESPRWLYRKGREEESKSILKKIYAPEDVDAEIE ALKESVESEIEESKTSKISMMTLLKTTTVRRGLYAGMGLQFFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGL NAFGSILSIYFIDKTGRKKLALISLCGVVLSLALLTVAFRESELHAPTVSAIETSHYNNTCPDFRAAVNPGRWTCMTCLK ASPSCGFCAASPNKLLPGACLISDDTTKDMCGNDHRAWYTRGCPSKFGWAALVGLALYIITFSPGMGTVPWVINSEIYPL RYRGVCGGIASTTVWISNLIVSQSFLSLTQTIGTAWTFMMFGILAVVAIFFVIVFVPETKGVPMEEVEKMLEQRSLQFKF WQKRDSGSEKH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 28 28 -
PANTHER 5 561 557 8.2E-295
PANTHER 5 561 557 8.2E-295
SUPERFAMILY 18 549 532 1.26E-72
TIGRFAM 20 362 343 2.5E-92
Phobius 29 54 26 -
TMHMM 29 51 23 -
ProSiteProfiles 29 540 512 54.339
Pfam 30 359 330 4.9E-93
CDD 32 538 507 1.88108E-162
PRINTS 37 47 11 1.8E-25
Phobius 55 65 11 -
Phobius 66 85 20 -
TMHMM 66 88 23 -
Phobius 86 96 11 -
TMHMM 95 117 23 -
Phobius 97 115 19 -
Phobius 116 120 5 -
Phobius 121 144 24 -
TMHMM 122 144 23 -
PRINTS 123 142 20 1.8E-25
ProSitePatterns 128 153 26 -
Phobius 145 155 11 -
Phobius 156 178 23 -
TMHMM 157 179 23 -
Phobius 179 183 5 -
Phobius 184 206 23 -
TMHMM 184 206 23 -
Phobius 207 272 66 -
TMHMM 272 294 23 -
Phobius 273 295 23 -
PRINTS 283 293 11 1.8E-25
Phobius 296 309 14 -
TMHMM 309 331 23 -
Phobius 310 333 24 -
Phobius 334 339 6 -
TMHMM 340 359 20 -
Phobius 340 359 20 -
Phobius 360 446 87 -
Pfam 447 550 104 5.4E-26
Phobius 447 473 27 -
TMHMM 451 473 23 -
PRINTS 452 473 22 1.8E-25
Phobius 474 484 11 -
PRINTS 475 487 13 1.8E-25
TMHMM 480 502 23 -
Phobius 485 506 22 -
Phobius 507 511 5 -
TMHMM 512 534 23 -
Phobius 512 536 25 -
Phobius 537 571 35 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0212400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…