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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0216900 |
Transcript ID | LotjaGi6g1v0216900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Proteasome assembly chaperone 4; TAIR: AT1G48170.1 proteasome assembly chaperone; Swiss-Prot: sp|Q5JS54|PSMG4_HUMAN Proteasome assembly chaperone 4; TrEMBL-Plants: tr|I3S521|I3S521_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0216900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51883114..51885251) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGTACAATTGGATGTGAATATAGCAGAGGAGGTGAGCAAACATTCAATTGTTTTCAGCTGAACAAAAGAAAAGCTT CATCTTGTTGAAGAAGTTTGACCTAAAAACCCTGCTTGAAGAAGTTAAGGTTAGGGTTTTAGGGTTAATGGATTCTCAAG GATTGGAGAAGGAAATTGAAGAATTGAAACTGAAGGAGAAGCAGGAGATTGATACAAGTGCGCATTCACATGATCAATTG AAGATCACTTCCTTTTCTGAAATCGTCAATGATGTTAGCCTCCATCTTCAGATCATTCGCTTCCCCAAACAGGTTTTTCC CTCTGCTTCAAATCAAGTTCTCATCTTTTTGTTTTCAAGTTATTTGATTTGAAACAAAACCAGTTAAAGCGTCATTTTCT TCAACTGGGTCACTCACAAACATGGGGCATTGACCAATGAGTTGGGGAAAATAGGGTTACTCTGAGAATACTGGAGTATT TGTATTGCTATTAGCCTGTTAGTATTTGCTACCTATGTTCACCCAATATGGATTTTCACATTTAGAGCAAGTGGTGATAA CACTGTTCTCTCAGTTTGGCCATTACTTTTGGTTTGGGAATCTAAATTTGGTTTGGGAATCTAAAGTTTGAACAAAATGA TGTGTCATAAAGCAAGTGTTTTAAGTGATCGGGGTTCGATTCTCAACTCATGTGAGTGGAAAAAACTCCTTGGTCAGCCT CCTATTGCTTAGTGCGCCTACTGCCTGCTTAGTGCGCTAACGGTGAGACTGGTGAGGCAAAGAATTAGTCTCACGGGCTG ACAAAAAATAATTTGTGTGGGATACCTTGGTTTGGGGTACCTTGGTGAAGACAAAAAAATAATGTGTTATAACTTATAAT GAAAGTTATTGTCTCTCAATGCTTTGATTTCTTTCTATCTTTTTACTCCTCAAACATTCTTTTGATATGAATGCCTGGTT GTCATAGATATATGTGTGGATTGGTTACAACTCTACAAAATTGGGACACATGTATGCAGCAGCTCCTACTCGTCCTGTAA GTTCTCTCATTCCTTTAAGGCTAAGCTGATTATGAGTGTTAAAAAATGTGTTGATGGTGATTTGTGATGATAAATGCAGA ACAACGTGGTGTCTGTAACTTCCTTACTTGGAGGGACATCTGATAATACAGGATCTGGCATTGCTCGTCGATTAGGTAAC TTTTGGCATGTTTGATAGTTTAAAATTAATCCCTTAGTTCATGATTTAATGTTCTTTGTTTCTGACAGTGTTGAAGACTG GTCTCAATATAGTCATGGCTTGCAGTATTCCAAAAAACAGCCCTATGATTGAGGTCTGGTTACCCTCTCTATTTCTCACA TATGCATGTCTGCACTTTTTGTGATCCATGTTAATGTCTTTGTTGTTGCTGCTATAGGTTCTGTTTTATGCTTTATTTAT AGAATATGTTGTTTTAAAAAATCATATTACTGTTTGTATGAGTCAACTCATGATAAGAAAGTGATGTCCTTGCAGAAAGG TATCTAAGTATTTATCTTGGTCCAACTTTCTACTGAGATATAATTATTATATTTGGCAAAGATTGCAATCAAACACTTAC ATTGATGCTTAATTTCTTGATTTTCCAGTTTTGTAATTTGTAATAGTTCTACAGTTGATCTGACCCTTGCCTTACTCATT ACTCAGCACCATTTTTTTTATTTTTTTTGCAACTTTCTTGGATTGCAGATAGAAGCTGAGAAGATATTGATACAGAAACT CATTAGTCTGGGCTATACGAAGTCAAGAGTTGAGGGAACATCTTTATAAAATAGGCAGGGAGACTTCATAATAGCCATTA TGTATTTTCCCAATGTTGTTATCTATAAATTAGAATTCACGGCAGCTATTAGAAGATTTTCAGCTTTGAGAATTGTTCCA ATCTAATTCTAATTAAATATATATTTACATTTAATTTTGTTGATAAATTTATCATACTATTTTGGGCGTTGCTCTGGTAC CCCCCTTTCAAAATAGGAGAGTTTGGAATCTCAGTACATTATTTAGAGTGGGAAGGATTGAGTTGTAAATTATGGAAGTT TATTGCGGAAGAAATCATGATAAAATAATCCAAAAGGGTATGAAACCTCAAATTTTTT
CDS sequence (LotjaGi6g1v0216900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCAAGGATTGGAGAAGGAAATTGAAGAATTGAAACTGAAGGAGAAGCAGGAGATTGATACAAGTGCGCATTC ACATGATCAATTGAAGATCACTTCCTTTTCTGAAATCGTCAATGATGTTAGCCTCCATCTTCAGATCATTCGCTTCCCCA AACAGATATATGTGTGGATTGGTTACAACTCTACAAAATTGGGACACATGTATGCAGCAGCTCCTACTCGTCCTAACAAC GTGGTGTCTGTAACTTCCTTACTTGGAGGGACATCTGATAATACAGGATCTGGCATTGCTCGTCGATTAGTGTTGAAGAC TGGTCTCAATATAGTCATGGCTTGCAGTATTCCAAAAAACAGCCCTATGATTGAGATAGAAGCTGAGAAGATATTGATAC AGAAACTCATTAGTCTGGGCTATACGAAGTCAAGAGTTGAGGGAACATCTTTATAA
Protein sequence (LotjaGi6g1v0216900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSQGLEKEIEELKLKEKQEIDTSAHSHDQLKITSFSEIVNDVSLHLQIIRFPKQIYVWIGYNSTKLGHMYAAAPTRPNN VVSVTSLLGGTSDNTGSGIARRLVLKTGLNIVMACSIPKNSPMIEIEAEKILIQKLISLGYTKSRVEGTSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Coils | 3 | 23 | 21 | - | – | |
PANTHER | 22 | 146 | 125 | 1.1E-51 | ||
Pfam | 44 | 117 | 74 | 4.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Proteasome assembly | The aggregation, arrangement and bonding together of a mature, active proteasome complex. |
Expression pattern of LotjaGi6g1v0216900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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