Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0222100 |
| Transcript ID | LotjaGi6g1v0222100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT1G19220.1 auxin response factor 19; Swiss-Prot: sp|Q8RYC8|ARFS_ARATH Auxin response factor 19; TrEMBL-Plants: tr|A0A0L9UB68|A0A0L9UB68_PHAAN Auxin response factor; Found in the gene: LotjaGi6g1v0222100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52669098..52674283) extracted from Lotus japonicus Gifu genome v1.2.
TATTTTTTTTTATCTCTTAATACAATTTAACATTATAACAGGAGAAAGGAAGAGCATCAATTCAGAGTTATGGCATGCTT GTGCTGGACCATTGGTTTCTTTACCTCCGGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACATAGTGAGCAAGTATGC TTCCAATCCCTTTGATTCTTCAAACATGATTTTTTTTCATTTTGGGTTCTGGTGGATAGGGAGAGCCTCGGTGCAACGGT AAAGTTGCTTCTGTCATGTGACTTTGTGGTCATAGGTTAGAGTAGTGGAATCAGCCTACTACAAAAATGTAAGGCTGCCC ACATTAGATCCATAAAGTAGGTCCGGCCCCTCTCTGGACCTCGCATAGTGAGAGTTTTATAGCACCAGGTTTGCCCCTTT TGGATTCTGATGGAGTTTCTTTTGACTATTATGACTTTCAGGTTGCAGCTTCCATGCAAAAGGAGGCTGATTTTATACCC AGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCCTTGCATGTAGGTGCACTTTCCTCATGTCA CCTGGCTGTGCTACAATAATGAAAACTTTTGAACAAGATTTCTTCAAATTTTTATTGCAAGAGTATTGCTTCAACAAGCA TTTGATATGATCCTTCTTCTGGTTTTCTATTTTTCTGAGTGCCAATACTTTATTACACAATACATAAATTGATATGTTTT TCTATTTTGGATCAGGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCAGTAAATAAAGTAGGTCA GCTGTTTAATCTGATAATTTGTTGATATATATATATATATCTGGGATCTGTTTGCCAATGACCCAAGCCGATGATGTATA ACTTGTCGAAGGTTGTTTGATGTTCATGTTCTGCAGTATGACAAGGAAGCAATGTTGGCATCAGACATGGGGCTCAAACA AAACAACCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTCTCTGTGCCTC GTAGAGCAGCTGAGAAAATATTTCCACCTCTGGTACGTATACAACGTTTTCATTTACTCTAGTAAGAATCGGGAAAGTCT TATCACTCTTATGTGATTTTTCTATGCTAACCGCTAACCAGAAGTTTCTTTGACAGGATTTTTCAATGCAACCTCCGGCT CAAGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGTATACTAACTCTTACCTT TCTTTCATTGCCTTCATCCTTTACTTTATTTTATCATTGGTTTCATTGTGATCTAAACCACTGTCATATGTTATCTTGTT TGTGATGCAACCTCATTTTGGTTGAAGTAATCATATCCTAGGAAATATCTATAATTATCAATTTAATGATACTCTTTGTT TTTGAATTCATATTATACGTTTGACTAATCAATGAATATAGAAGTTTCTTATTTGATGTTTTACATGGTTGAGTACTAAA ACTGCTAGAACATCGGTTACAGGACAACCAAAAAGGCATCTATTGACTACCGGTTGGAGTGTCTTCATTAGCACGAAAAG GCTGTTTGCCGGAGATTCTGTTCTTTTTGTAAGGTAAAGAGTAATTTTTTATTTTTTTTATTGGAAACTCCAGGAATAAT TCGATACCTGTCGCTGAGCCAGTTAACTTTGATTATTTTTAGAGATGAAAAACAGCAACTTCTTTTAGGCATAAAGCGAG CTAATAGACAGCAAACAGCTCTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCT CATGCTGCTTCAAATAACAGCCCTTTTACTATATTTTATAATCCAAGGTACTAATTGGATTGAATCATTGCTATGATAAC ATAGAATGGCATCCATTATTTATTTGTGACAGCCTCTTATAAACATCTTTCAATTTAACAGGACCAGCCCCTCTGAATTT GTAATTCCATTGGCCAAGTATAATAAGTCCATGTACTCTCAAGTTTCTCTTGGAATGAGATTCAGAATGATGTTTGAGAC TGAGGAGTCAGGAGTGCGCAGATATATGGGTACAGTCACTGGGATCAGTGACTTGGATCCTGCCCGCTGGAAAAGTTCAC AGTGGCGAAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCTATTTGGGATATTGAA CCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCTTTTTTTAGGCCCAAGTACTCCAAGCAACCAGGAATGCCAGGTAG CCAGAGTCCCCTTAACTTATTCAAATTTTGATTGATTTACTTTAATTTAAAATTTGCAAGGATTATATTCAATTTGTTAA AAATCTGTCTAAAAGAAGATTTATACTTAAGCACTGTTAACAGGTCTGCGGAAGTTCAATACTGGATGTTGGTTGTATGC ATACAGTGATTAAACTGACGAATTTGCTTGTACATACATGATTTTGAGTCAAGAAGCTTGTGTTCATGAAAATCTAGTTT AGATCCATTTAATTGGTGTGTTCAAAAGATTTTTTTGAAATGATCTCAACTTTGAAGTACATTCTCATATTTAATAGAAT TTTGAAAGAGTAACATTCAGAAAGTCCATATGTCATTTGTCTCTCCTCTTCTCATCCTTTGGATGTTGTGTTTAGATAGG TGATAGATGATCATTCCTATTTATTTTGCAGAAGATGAGTCTGATATAGAAAATGCTTGCAAGAGGGCTATGCCTTGGCT TGGGGATGAACTTGGCATGAAGGACGCCTCGAGTTCAATCTTTCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGC AGAATAATCAGTTTTCTACCACACAATCAGGATTTTTACCTCCATCTATGTTGTCATCAAATACACTGCATGGTAACCTT AACACTGATGATCCATCCAAGCTATTAAGCTTTCAAGCCCCTGCTCTCTCTACTCCAACAAGTCTTCAATTTAGCAAACC TAATTTACCAAACCAAGTCAATCAATTGCAACAGTCCCCAACTTCTTGGCCTCAGCAGCAGCAGAAGCTGCAGTCATTGT TGCAAACACCATTAAACCAGGTCCAGCAGCAGCAGAGGCAACAACAGCAGCCTGGGCCACAAAACCTGCCACAGCCACCG CAACAACAACAGCAACCGCATCTGCCTCAACAGAGAGCACAACAAACACAACAACAACAGCAACAGCCGTTTCAACATAC GGTTATGAATAATGGGGCAGTTGCTTCTAGCCAGATTCCAAATCAAGGTGTACAGCAACCAGTAACCTATTCTCAGCTTC AGCAACAGCAATTACTCTCAGGAAGTGTACCACCCCAACAAGGTTTCCAATCATCCGGTAAGAATACATTGCTAATGACA TCCTTACCACAAGAGTCACAATTTCAGCAACACATAGACCAGCAATCTACTCTCTTACAGAGGCAGCAGCAGCAGCAGCA GCAACAGCAACAGACACAGTTGCAACAATCTCCAATGCAGTTATTACAACAAAGCCTGTTGCACAGGGCACCACAGCAGT CACAAATGACTCAAATGTCACTGCAAAACGCCTCAGAGCAACAACCACAGTTACAGTTACTACAAAAATTGCAACAACAA CAACAGCAGCAGCAGCATCAACAACTCCTTTCTACATCTAGCCCAAATATGCAGTCTCAGCTCCTGCAGCAACAAAATGC TCACCAACAAAACCAGCAACTACCACAACTGCCTCTGTCACAGCACCAGCCTCAACAGCTCGGTAACAATGCATTCTCAA TGGATAAGTTTCTTAACAACAACTTCTCTTCAGCTCCGATGCAATCACAGCAACTTCCTGGGAACCAATCCCAGAACACA CCGAAATCACTGTCTAGAGCACCCTCTACTCTTTCAGATGGAGATGCACCATCATGCTCAACTTCTCCATCTACTAATAC CTGTCAGATATCTCCTCCAAATCTTCTGAGAAGAAATCAACAAATAACTGTCACATTAGGGGTGACTTCAGTTGTTGAAC CCACCAATAATCTGATGGAGCTGCAGACTAAGTCTGACATGCAGATCAAACATGAACTGCACAGTGCTAAAGGGCCTGAC AAGCTAAAATATAAAGGAACAATTGCTGAACAGATGGAGACTTCTTCCGGAACATCTTACTGTATTGATACTGGTAATAT CCACCAGAACTTCCAACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTACCATTTGCAT CTCATCTTGATGGATTAACACCAGATACTTTTCTCTCAAGGGGGTATGACTCTCAAAAAGATCTTCAGAACTTGCTGTCT AATTATGGTGCTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCTATTAGCTCAGAGCTGTTTGGGATGCCAAA CATGCCTTTTAAGCCCGGATGCTCAAATGATATTGCCATGAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCCAATC AAACTCAACGAATGCGAACATATACCAAGGTTTGCCATCACTCATTCTTTGACAAATTTGTGAATCTATTCAAATTTAGT ATATTGACTGAGTGCATTAACTACCTATTTTTAACATCTTGTTTGAATGGTGTTTAAATGCTTGATACTGATTGCTTATT GCGCAGGTGCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTATAGTGGATATGATGAACTCCGGCAGGA TTTGGCTCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGAACTGAATGGAAACTGGTATATGTAGATCATG AAAACGACATTCTTCTTGTCGGTGATGACCCTTGGGAGTAAGTAATTAATTCCTTGTAGTTCACAGTGCCTAATATTTCT GCCATTCTGGTTTTTCTTCTTAATCTTGAACTTACAATTCCTTGCAGAGAATTTGTGAGCTGTGTCCAGAGCATAAAGAT ACTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGCCATGTTCCAATCCCCAATCAGGCTTGTAGCG AGACGGAAAATGGCAATGCTTGGAGGGGACAGTATGATGATAACTTCAAGTAGTTGACATTTTTGA
CDS sequence (LotjaGi6g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAAGGAGGCTGATTTTATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCCTT GCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCAGTAAATAAATATGACAAGGAAGCAATGT TGGCATCAGACATGGGGCTCAAACAAAACAACCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGC ACTCATGGTGGATTCTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTTCCACCTCTGGATTTTTCAATGCAACCTCCGGC TCAAGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAAAGGCATC TATTGACTACCGGTTGGAGTGTCTTCATTAGCACGAAAAGGCTGTTTGCCGGAGATTCTGTTCTTTTTGTAAGAGATGAA AAACAGCAACTTCTTTTAGGCATAAAGCGAGCTAATAGACAGCAAACAGCTCTATCTTCATCAGTAATATCCAGTGACAG CATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCTTTTACTATATTTTATAATCCAAGGA CCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGTCCATGTACTCTCAAGTTTCTCTTGGAATGAGATTC AGAATGATGTTTGAGACTGAGGAGTCAGGAGTGCGCAGATATATGGGTACAGTCACTGGGATCAGTGACTTGGATCCTGC CCGCTGGAAAAGTTCACAGTGGCGAAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTT CTATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCTTTTTTTAGGCCCAAGTACTCCAAGCAA CCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTGCAAGAGGGCTATGCCTTGGCTTGGGGATGAACTTGGCAT GAAGGACGCCTCGAGTTCAATCTTTCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATCAGTTTTCTA CCACACAATCAGGATTTTTACCTCCATCTATGTTGTCATCAAATACACTGCATGGTAACCTTAACACTGATGATCCATCC AAGCTATTAAGCTTTCAAGCCCCTGCTCTCTCTACTCCAACAAGTCTTCAATTTAGCAAACCTAATTTACCAAACCAAGT CAATCAATTGCAACAGTCCCCAACTTCTTGGCCTCAGCAGCAGCAGAAGCTGCAGTCATTGTTGCAAACACCATTAAACC AGGTCCAGCAGCAGCAGAGGCAACAACAGCAGCCTGGGCCACAAAACCTGCCACAGCCACCGCAACAACAACAGCAACCG CATCTGCCTCAACAGAGAGCACAACAAACACAACAACAACAGCAACAGCCGTTTCAACATACGGTTATGAATAATGGGGC AGTTGCTTCTAGCCAGATTCCAAATCAAGGTGTACAGCAACCAGTAACCTATTCTCAGCTTCAGCAACAGCAATTACTCT CAGGAAGTGTACCACCCCAACAAGGTTTCCAATCATCCGGTAAGAATACATTGCTAATGACATCCTTACCACAAGAGTCA CAATTTCAGCAACACATAGACCAGCAATCTACTCTCTTACAGAGGCAGCAGCAGCAGCAGCAGCAACAGCAACAGACACA GTTGCAACAATCTCCAATGCAGTTATTACAACAAAGCCTGTTGCACAGGGCACCACAGCAGTCACAAATGACTCAAATGT CACTGCAAAACGCCTCAGAGCAACAACCACAGTTACAGTTACTACAAAAATTGCAACAACAACAACAGCAGCAGCAGCAT CAACAACTCCTTTCTACATCTAGCCCAAATATGCAGTCTCAGCTCCTGCAGCAACAAAATGCTCACCAACAAAACCAGCA ACTACCACAACTGCCTCTGTCACAGCACCAGCCTCAACAGCTCGGTAACAATGCATTCTCAATGGATAAGTTTCTTAACA ACAACTTCTCTTCAGCTCCGATGCAATCACAGCAACTTCCTGGGAACCAATCCCAGAACACACCGAAATCACTGTCTAGA GCACCCTCTACTCTTTCAGATGGAGATGCACCATCATGCTCAACTTCTCCATCTACTAATACCTGTCAGATATCTCCTCC AAATCTTCTGAGAAGAAATCAACAAATAACTGTCACATTAGGGGTGACTTCAGTTGTTGAACCCACCAATAATCTGATGG AGCTGCAGACTAAGTCTGACATGCAGATCAAACATGAACTGCACAGTGCTAAAGGGCCTGACAAGCTAAAATATAAAGGA ACAATTGCTGAACAGATGGAGACTTCTTCCGGAACATCTTACTGTATTGATACTGGTAATATCCACCAGAACTTCCAACT TCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTACCATTTGCATCTCATCTTGATGGATTAA CACCAGATACTTTTCTCTCAAGGGGGTATGACTCTCAAAAAGATCTTCAGAACTTGCTGTCTAATTATGGTGCTGCTCCA AGAGACATTGAAACTGAGCTGTCCACTGCTGCTATTAGCTCAGAGCTGTTTGGGATGCCAAACATGCCTTTTAAGCCCGG ATGCTCAAATGATATTGCCATGAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCCAATCAAACTCAACGAATGCGAA CATATACCAAGGTGCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTATAGTGGATATGATGAACTCCGG CAGGATTTGGCTCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGAACTGAATGGAAACTGGTATATGTAGA TCATGAAAACGACATTCTTCTTGTCGGTGATGACCCTTGGGAAGAATTTGTGAGCTGTGTCCAGAGCATAAAGATACTGT CATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGCCATGTTCCAATCCCCAATCAGGCTTGTAGCGAGACG GAAAATGGCAATGCTTGGAGGGGACAGTATGATGATAACTTCAAGTAG
Protein sequence (LotjaGi6g1v0222100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNNQPTEFFCKTLTASDTS THGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFVRDE KQQLLLGIKRANRQQTALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPSEFVIPLAKYNKSMYSQVSLGMRF RMMFETEESGVRRYMGTVTGISDLDPARWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKYSKQ PGMPEDESDIENACKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNQFSTTQSGFLPPSMLSSNTLHGNLNTDDPS KLLSFQAPALSTPTSLQFSKPNLPNQVNQLQQSPTSWPQQQQKLQSLLQTPLNQVQQQQRQQQQPGPQNLPQPPQQQQQP HLPQQRAQQTQQQQQQPFQHTVMNNGAVASSQIPNQGVQQPVTYSQLQQQQLLSGSVPPQQGFQSSGKNTLLMTSLPQES QFQQHIDQQSTLLQRQQQQQQQQQQTQLQQSPMQLLQQSLLHRAPQQSQMTQMSLQNASEQQPQLQLLQKLQQQQQQQQH QQLLSTSSPNMQSQLLQQQNAHQQNQQLPQLPLSQHQPQQLGNNAFSMDKFLNNNFSSAPMQSQQLPGNQSQNTPKSLSR APSTLSDGDAPSCSTSPSTNTCQISPPNLLRRNQQITVTLGVTSVVEPTNNLMELQTKSDMQIKHELHSAKGPDKLKYKG TIAEQMETSSGTSYCIDTGNIHQNFQLPNFCMDGDVQSHPRNNLPFASHLDGLTPDTFLSRGYDSQKDLQNLLSNYGAAP RDIETELSTAAISSELFGMPNMPFKPGCSNDIAMNDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYSGYDELR QDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPIPNQACSET ENGNAWRGQYDDNFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1042 | 1042 | 0.0 | – | |
| PANTHER | 1 | 1042 | 1042 | 0.0 | – | |
| SUPERFAMILY | 60 | 199 | 140 | 2.49E-44 | ||
| Gene3D | 67 | 172 | 106 | 2.1E-40 | ||
| CDD | 69 | 161 | 93 | 7.5393E-20 | ||
| SMART | 70 | 172 | 103 | 9.0E-23 | ||
| ProSiteProfiles | 70 | 172 | 103 | 12.026 | ||
| Pfam | 70 | 171 | 102 | 2.3E-20 | ||
| Pfam | 196 | 278 | 83 | 1.3E-34 | ||
| Gene3D | 233 | 304 | 72 | 1.9E-32 | – | |
| MobiDBLite | 413 | 498 | 86 | - | – | |
| MobiDBLite | 413 | 466 | 54 | - | – | |
| MobiDBLite | 479 | 498 | 20 | - | – | |
| MobiDBLite | 602 | 621 | 20 | - | – | |
| MobiDBLite | 639 | 667 | 29 | - | – | |
| MobiDBLite | 690 | 747 | 58 | - | – | |
| Gene3D | 928 | 1022 | 95 | 1.5E-40 | – | |
| Pfam | 930 | 1019 | 90 | 2.1E-9 | ||
| ProSiteProfiles | 933 | 1026 | 94 | 24.883 | ||
| SUPERFAMILY | 946 | 1011 | 66 | 4.81E-9 | – | |
| MobiDBLite | 1036 | 1055 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi6g1v0222100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…