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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0223700 |
| Transcript ID | LotjaGi6g1v0223700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|G7IGG7|G7IGG7_MEDTR Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52870158..52877395) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGCAGTTTCATTGCGCGCCTCTCTCATTTCCGGGACTGAACCCTAAAACACTGACTGAACACACATCTCTTGGGAAC AGAACCTCAACTACCGATGGGCTATGGCATCATCGGGTTCGAACGAACTCACCCGTGCAGCAACCACCAATATGGTTCAG TCCATTCGCTTCTTGATCAGGTTTCCCCTTGTTCCTCCTCCTAATTTCATATGCAAAACTAAGCACCAATTCACAATTGA AAATTCATTTTGGTTTTGTTTCATAATTCATTTTGATGATAAAAATGTATGTACTATGTAGCTGTTCTGTTTCATAATTC ATTTTTGTTTTGTTTCGATTTCTAGTTATGCTGCTGATACTGAATTACTCATACTTGTTGTGCAGAGAAAACTCCCTCTA GAAGCAATCTACTTGGAAATTCGAGATTCAACCCATGGCTGGTAACAATATCTATATCTTTGTTTCCATTTATTTAATTC ACCCATTGTTTCTTGGGCCTAGACTTGAACTTTTGTTGATTTCATGAAAGCCCAGAACCCCATATTTAACCACCCAATTC TCAAACTGTTGCAAAAATGCCATAGCCTCAACACTCTTAAGCAAGTCCATGCTCAAATGCTAACAACTGGTCTTGCACTT CATACATACTGTCTCAGTCACCTCCTTACCATATCTTCCAAGCTTGCCTCAACCTATGCTCTCACCATCTTTAGCTCTAT CCCAAACCCCACAGTTTTCCTCTACAACACACTCATTTCTTCCTTTACTAGTCATAGTAGCCAAATCCATCTAGCATTCT CGCTTTATAATCGCATTCTCGCTCACAAGACCCTCCAACCCAATAGCTTCACTTTCCCCTCGCTCTTCAAGGCTTGTTGT GGCTCTGGCCATTGGTTTCAATATGGTCCGCCCCTCCACGCCCATGTTTTGAAGTTCCTTGAACCGCCGTATGATCACTT TGTTCAAGCGTCGCTGCTGAATTTCTATGCTAAATATGGGAGGCTGTGTGTGTCTAGATGTTTATTTGATCAAATTAGTG AACCTGACTTGGCCACATGGAATACCCTGTTGGCTGCTTATGCACGCAGTGCGAGTCATAGTTACTCAACCAGTTTAGAA GATGCTGATTTGTCCTTAGAGGCGTTGTATTTGTTCTGTGACATGCAGATGTCTCGAAGAAGGCCTAATGAAGTGACACT TGTGGCATTGATTAGTGCTTGTTCTAATTTAGGTGCTCTTAGTCAAGGGGTTTGGACTCATTGTTATTTGCTGAGGAACA ATCTTAAGTTGAATCGGTTTGTGGGAACTGCACTGGTGGATATGTATTCCAAATGTGGCTGTCTCAATTTAGCCTGTCAG TTGTTTGATCAGTTGACTGATAGGGATACATTTTGCTACAATGCCATGATTGGGGGTTTTGCAGTTCATGGTCATGGGAA TCAAGCACTTGAACTTTATAGAAAGATGAAATTTGAGGGCTTAGTTCCTGATAGTGCAACTTTTGTTGTTTCCATGTTTG CCTGCTCTCATGTTGGACTGGTAGAGGAAGGCTTGGAGATTTTTGAGTCCATGAAGAAGGTTTATGGGATGGAACCAAAA CTTGAGCATCATGGATGCCTAATCGATATTCTGGGTCGAGCTGGGAGATTAAAGGAGGCAGAGGAGAGGTTAAAAGATAT GCCCATGAAGCCCAATGCAATTTTATGGAGGTCTTTACTTGGGGCTGCAAGAATTCATGGGAATTTAGAGGTGGGGGAAG TTGCTCTAAAACACTTAGTAGAGTTGGAACCAGAAACTAGTGGAAACTATGTGCTCCTGTCTAATATGTATGCTAGCATT GCTAGGTGGAATGATGTGAAGAGAGTGAGGAAGCTGATGAAATCTCATGGGGTTAACAAGTTGCCAGGATTTAGCCTAGT GGAGATTGATGGTGCCATGCATGAGTTTCTCACAAGTGACAAAACTCATCCATTTTCAAAAGAAATATATTTGAAAATTG GGGATATTAATAGAAGACTACAAGAATTTGGTCACAATCCAAGAACATCAGAGGTTTTGTTTGATGTGGAAGAAGAAGAA AAGGAAGATGCCCTTTCTTACCACAGTGAAAGACTAGCCATAGCATTTGCTCTTATAGCATCACCTTCAAGTTTGCCCAT AAGAATTATTAAAAACCTTCGAGTTTGTGGGGATTGCCATGTGTTTACCAAGCTAATATCAGCAGCGTATCAAAGAGATA TTATAGTCAGAGACCGAAATCGGTTTCACCATTTTAAGGATGGGAGTTGCTCTTGTCTAGATTACTGGTGATAGTACCAT GTTCACATTATAACGAATTCAATACTTGAAAGGAAGAACATAATTTGCTACAATCATGTGGATATCATTTTGTTTGGAAA AACATTCATTTATGTTTTCCCCCTCTCTGAGATAAGATTAATGGAAAACACACATTAAATGTGTAAGAACATTTTTTATA TTATATAAAAGTAAAGCACCTAGAATCCACTTAAAATAGTGGGGAGAAATAATAGACAAGATTTTTTTTTATAGGCAAGT GTTAGTGGTTAGTTGTTAGTAAGTTAGAAATTCCCTTTAAAGTTCTCTTTCAGGATTCGAACCCTGAACCTTCCCTCCCC ACCCTTATGTCCCCTAACTCTTACCACTTGAGCTAACCCTCGGGGACAAATAATAGATAAGATGATTGATGATATATGAA AATAAAATAAAAATAAAATAAAAAGTGAATACAATTTATAAAAGAAAAAATATGTATATTCTTTTTTTTAAATAAAATGG TAGAGAATAATGTTTGGTTAACATACCAATTCCACCTCAACCTTGTGAGATAAGTGGGAATAAAAGATAAATGAATGATA TGATTTGTGATGTGACATGAAATACAGAGAGAGATAGAAGGAAAAAGAGGTGGAAATGAGATAGAAGAGAAAGTGAGGTG TGTATATATCATTACTCACTCACTACAAGTTTGAAGAAAAGTGAGTTGAGTCGAACTAACCCACTTTTAGGCTAAACCTA AAAATTCATAATCCTACTCAATTCACCACGAGTTAGTAGTTAGGTGAATTGACTCACTTTTATTTAAATGAAAATAAAAC TTGTTAAAATTCAAAAAAAAAAAATTTGTAAAACAATATTAAAAATTAGAAAAATATGATTTTTTTTTTCAATGTTTCAC CACAAAATGTGTAAAAAAATGTTTCATTAAATTGAATCATGTTATTGTTATTGTATTAGAAAATCATTTTAATGTTTTTT AGATTGACTTAAAAATAAAATAAAAACAATTTGGTTCAACTTACTACAATCTCAACCCGTTTAGTCCATCAAAGTTAGTT GAGTCGAGTCAAAAAAACTCACACAGTTGCCAACTCATTTTCAACTGAACATGATAAAAAGTGGGTTGAGTTAAGCTGGC TCACGAGCATGAGGCTAATCTTTTCGAAATTTAAAGATCACATTAAATAAGTAAGACTATTCTAACAAATAATCTTTCAT ACATACCGTCTAAAGAAAGATAGTACGCTAAACTAGATTTTTAAATAATTGCACCTTGAACTATTTTTTGGTGAATAGAA CTTAGCTTTCGAATGTGCTAAACTTTGTAAGTGGATTTTGAGAGGCGTAACTATTGATTGCTTTGCTACTTGCTGGCGAA TATATTGATGTGATAAAAGAAAAGAAGTTAAAAAAAAAAAAGATTCCAACAAAAAAGGAAAATAGAAAAGAAAAAAAATG AGTTTCATTGCACGCGCTTCTCTCAGAAGCTCTTGCATCCAGTGGCAAACGGAGCGTTGAACCTCTTCCCCTAAAACACT GACTCAACGACCTATGGCATCATCGGGTTCGAACGAACTCACCGGCACCAACACGCTTCAGTCCATTCGCTACAATCGCG GTTCCCTTCAGCTTCTTGATCAGGTTTAAACTAAGCACCAATTCACAAACCAAAATTCATTTTGCTTTTGTTTCATAATT CATTTTTGTTTTGTTTGGAATTCTAGTTATGCTGCTGATACTGAATTGCTGATACTTTTTGTGCAGAGAAAACTCCCTCT AGAAACAATTTACTTGGAGATTCGCGATTCAACCGATGGCTGGCAAGATATTATCACCATGCCTTAATGCTTTGTTTGAA TTTGCATATCAGGAGTAATTAAACAACTAGTTATAATGTGATTTTGTACTTACACATGTAACTTTGAACTGAAATGATTT TAGTCAACCTGACTTGGTTTTCCACTATGACCACTTAATGTTTGGATACCGTGCTAACTTGCGTGAGCGCTCACTTCAAT TCGGATTGAGATGAATATGTTTTCACGTTAATTTAACTGGTATCCAAACACACACTTACATAACTTTTATCGAATCTACT TCATATTCTAAAGGGGTTAATAGTCATGTTACCATCAGTTTTGGATTGCGGTTACGGTTGTTGCGGTCTTCTTTAACTTT TTTTTGGTGAAATATGGTTGTTTGAGTCTAATTACGATCGGGCTCATAGATCAACTGGTAGGGGTTAATCAAACTTAACT AGGAGCCATTTAAGGACGGAAAAAAGAAAGAATATAGTAGAACAGTTCATCGCATGATGTAGTCTACAATTTCAAACTTT GGTTATAGTAGTAAGTAGTAACAGTGAATGTGGGAAAAAGAAAGCCGATTGAATCTAGACTGTTATCTTAATGCTTTCAA TCAATGGATTCAGATATCTAAATTTTCATGACTTTCTCAGGAATGCCATTCGGGATATGGTGGTCCGAGGAGCACCTGCT ATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGATTTTAGTGGGTCGCCCAGTGATGCGGC TTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGGTATTTTCGGTTGTCTACATTGATAATACAACAATCTGCTT ATTTTGGATATGGTATTGCCTGGTAACTAAATAGCATTTGGCTTGTTGAGGTGTCTTTTTATGTAGTTGAGGCTGTTATT ATAAGTTTCAAACGTTCCTTGTAAGCATGTATGAATTTTAGCTTGATTTTTTCCTTCATGATTCAGTCGGCCAACTGCAG TGAACCTATCAGATGCTGCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTT TTTCAGGTATTACAAAGACTTATTATAATCAAGGAACTTTTGCAAATAAATAATGTTACATTTTGTACCTTTTTGCTCTC TTATTTTGTGTTTGACCATTTGAACCTGAATCTACTGGATTACTTTAAAGGATTATATAGAGGCTGCTGAAATTATGCTC GTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTACTTTTATTCAACACCAAGTTGAGAAGCCTAAGCT TTCTGTTTTGACCCATTGCAACACTGGAAGGTGCTTGCTACAGTACCACCTCTTGTTATTTTAGTACAATCATTCATATC CTTTTTTGTTTATTTGTTTGACAAATGATGTGAGAAAGTCTTTGAAGTTTGAACTCACTTGCAAGTGTTTTTGATTCGTT TCAGTTTAGCTACTGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCT TATTGCACAGAAACACGCCCATTCAATCAAGTGAGTGCAGTTTTTCAAAGTATTAGTTATATTCAGGGCTGTTTTAGAGA CGATACATGTTCTAAGTTACCTTTTAATAGGGGTGGTCTGTATTAGCTGTTTATTCTGCTACTTGGAATCTTGAATTAGT ATTATGGCTTGGCTTGAAACAGAACTGAACTATAATGATGTACTTATATTTTGGTTTATGGTCCATGTTCAAATTTGTAT TTCAGTGATAGTTATAGTTGACCTTTTTGTCTACATAGTCATTCATTTGAAAAAGCGAGAAAATAGTTTGAACCCCTTAA ATTAGGATTTCCTTAATGATCGTTTTTTTTTTTGCGGGAGGGGGGGTTGGTTCTGAAGTCAACAATGGAATTTGGTTAGC AGAAAGTAGTTTTGAGAACAAATTTCCAACCTTTTATTAAGTTTTTTTTCCTCTTGAATCTATCTTCAGAATAATATTCT CCTTAACTGCATTTCATGAAATTAATGAGTTAAATTGATTTGGTGTATAATGCTAAATTGCAGGGATCTAGACTGACTGC CTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCTGCAGCTGCACTAATGAAGTCGGGACGCG TGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGTACTTTTGAGTTACAACAAAAAATAAACTATATTTGC TTGTCTTCTAGAGTATGGGAACATCATATGGATCTTCATGTAAATGGTATTGCAGGAGACACAGCCAACAAAATTGGAAC CTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTTCAATTGATCTCTCAC TTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGAGGACTTGGAGAGCAG GTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATCTGGGATTATTACTGA GAAGGTATGTCTTACCTCTTCCTACTCTTGCATCATTTGTATGGGGTTCAGTTGCACTTTTTTCTCTGATCATTTTATGT TCTCTCGGCAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAACACTTTAA GGGCTGAAAGTGTTTAGTGTCAATGACCTATGGTGGAGTTAGATTTTTCTAACACATTGCATCCATTTTAGATTGGAAAG TATTGTGTTAAATTTTTTGTTTGAGGTTGTGACTTCAGCACAGGATTAGCTTCTTCAATGGAAATGTCCCGGGAAATAAA TCGCGGCCTGTTTAATAAACATGTCAATAAGAAATTGGCGGCGATCATGCCCTACATGCTTAAAATCGAATGCCATGGGT TCTTTGAAAGTCAGTTTGATCACCTGGTTGTATGATAAAATTCAAATATTATGAAGTGTGTTATGTGCTTTATTGGAAAT TGCATTAAATAAGGTAATAAAAGTTCTCAGTACTAAGG
CDS sequence (LotjaGi6g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTATGGCATCATCGGGTTCGAACGAACTCACCCGTGCAGCAACCACCAATATGGTTCAGTCCATTCGCTTCTTGA TCAGAGAAAACTCCCTCTAGAAGCAATCTACTTGGAAATTCGAGATTCAACCCATGGCTGGAATGCCATTCGGGATATGG TGGTCCGAGGAGCACCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGATTTTAGT GGGTCGCCCAGTGATGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCT ATCAGATGCTGCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTTTTTCAGG ATTATATAGAGGCTGCTGAAATTATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTACTTTT ATTCAACACCAAGTTGAGAAGCCTAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACTGCTGGATATGG TACTGCTCTGGGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCA ATCAAGGATCTAGACTGACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCTGCAGCT GCACTAATGAAGTCGGGACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGAGACACAGCCAACAA AATTGGAACCTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTTCAATTG ATCTCTCACTTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGAGGACTT GGAGAGCAGGTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATCTGGGAT TATTACTGAGAAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAACACTTT AA
Protein sequence (LotjaGi6g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYGIIGFERTHPCSNHQYGSVHSLLDQRKLPLEAIYLEIRDSTHGWNAIRDMVVRGAPAIAIAAALALAVEVSNLGDFS GSPSDAASFLQNKLEYLVSSRPTAVNLSDAATKLKEVISGAAATASEAKSVFQDYIEAAEIMLVDDVASNRAIGSYGATF IQHQVEKPKLSVLTHCNTGSLATAGYGTALGVIRALHSGGALERAYCTETRPFNQGSRLTAFELVHDKIPAALIADSAAA ALMKSGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGL GEQVAASGISVWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQKTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 203 | 191 | 2.6E-62 | – | |
| Hamap | 17 | 365 | 349 | 70.206 | ||
| SUPERFAMILY | 20 | 360 | 341 | 2.42E-112 | ||
| PANTHER | 24 | 371 | 348 | 4.9E-153 | – | |
| PANTHER | 24 | 371 | 348 | 4.9E-153 | – | |
| TIGRFAM | 24 | 356 | 333 | 1.6E-139 | ||
| TIGRFAM | 42 | 356 | 315 | 7.5E-106 | ||
| Pfam | 55 | 355 | 301 | 4.9E-76 | ||
| Gene3D | 204 | 369 | 166 | 4.1E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of LotjaGi6g1v0223700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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