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LotjaGi6g1v0223700.3

Overview

Field Value
Gene ID LotjaGi6g1v0223700
Transcript ID LotjaGi6g1v0223700.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|A0A151RME1|A0A151RME1_CAJCA Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:52873832..52877402) extracted from Lotus japonicus Gifu genome v1.2.

GGCGAATATATTGATGTGATAAAAGAAAAGAAGTTAAAAAAAAAAAAGATTCCAACAAAAAAGGAAAATAGAAAAGAAAA AAAATGAGTTTCATTGCACGCGCTTCTCTCAGAAGCTCTTGCATCCAGTGGCAAACGGAGCGTTGAACCTCTTCCCCTAA AACACTGACTCAACGACCTATGGCATCATCGGGTTCGAACGAACTCACCGGCACCAACACGCTTCAGTCCATTCGCTACA ATCGCGGTTCCCTTCAGCTTCTTGATCAGGTTTAAACTAAGCACCAATTCACAAACCAAAATTCATTTTGCTTTTGTTTC ATAATTCATTTTTGTTTTGTTTGGAATTCTAGTTATGCTGCTGATACTGAATTGCTGATACTTTTTGTGCAGAGAAAACT CCCTCTAGAAACAATTTACTTGGAGATTCGCGATTCAACCGATGGCTGGCAAGATATTATCACCATGCCTTAATGCTTTG TTTGAATTTGCATATCAGGAGTAATTAAACAACTAGTTATAATGTGATTTTGTACTTACACATGTAACTTTGAACTGAAA TGATTTTAGTCAACCTGACTTGGTTTTCCACTATGACCACTTAATGTTTGGATACCGTGCTAACTTGCGTGAGCGCTCAC TTCAATTCGGATTGAGATGAATATGTTTTCACGTTAATTTAACTGGTATCCAAACACACACTTACATAACTTTTATCGAA TCTACTTCATATTCTAAAGGGGTTAATAGTCATGTTACCATCAGTTTTGGATTGCGGTTACGGTTGTTGCGGTCTTCTTT AACTTTTTTTTGGTGAAATATGGTTGTTTGAGTCTAATTACGATCGGGCTCATAGATCAACTGGTAGGGGTTAATCAAAC TTAACTAGGAGCCATTTAAGGACGGAAAAAAGAAAGAATATAGTAGAACAGTTCATCGCATGATGTAGTCTACAATTTCA AACTTTGGTTATAGTAGTAAGTAGTAACAGTGAATGTGGGAAAAAGAAAGCCGATTGAATCTAGACTGTTATCTTAATGC TTTCAATCAATGGATTCAGATATCTAAATTTTCATGACTTTCTCAGGAATGCCATTCGGGATATGGTGGTCCGAGGAGCA CCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGATTTTAGTGGGTCGCCCAGTGA TGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGGTATTTTCGGTTGTCTACATTGATAATACAACAAT CTGCTTATTTTGGATATGGTATTGCCTGGTAACTAAATAGCATTTGGCTTGTTGAGGTGTCTTTTTATGTAGTTGAGGCT GTTATTATAAGTTTCAAACGTTCCTTGTAAGCATGTATGAATTTTAGCTTGATTTTTTCCTTCATGATTCAGTCGGCCAA CTGCAGTGAACCTATCAGATGCTGCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAA AGTGTTTTTCAGGTATTACAAAGACTTATTATAATCAAGGAACTTTTGCAAATAAATAATGTTACATTTTGTACCTTTTT GCTCTCTTATTTTGTGTTTGACCATTTGAACCTGAATCTACTGGATTACTTTAAAGGATTATATAGAGGCTGCTGAAATT ATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTACTTTTATTCAACACCAAGTTGAGAAGCC TAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGGTGCTTGCTACAGTACCACCTCTTGTTATTTTAGTACAATCATT CATATCCTTTTTTGTTTATTTGTTTGACAAATGATGTGAGAAAGTCTTTGAAGTTTGAACTCACTTGCAAGTGTTTTTGA TTCGTTTCAGTTTAGCTACTGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAA AGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGTGAGTGCAGTTTTTCAAAGTATTAGTTATATTCAGGGCTGTTT TAGAGACGATACATGTTCTAAGTTACCTTTTAATAGGGGTGGTCTGTATTAGCTGTTTATTCTGCTACTTGGAATCTTGA ATTAGTATTATGGCTTGGCTTGAAACAGAACTGAACTATAATGATGTACTTATATTTTGGTTTATGGTCCATGTTCAAAT TTGTATTTCAGTGATAGTTATAGTTGACCTTTTTGTCTACATAGTCATTCATTTGAAAAAGCGAGAAAATAGTTTGAACC CCTTAAATTAGGATTTCCTTAATGATCGTTTTTTTTTTTGCGGGAGGGGGGGTTGGTTCTGAAGTCAACAATGGAATTTG GTTAGCAGAAAGTAGTTTTGAGAACAAATTTCCAACCTTTTATTAAGTTTTTTTTCCTCTTGAATCTATCTTCAGAATAA TATTCTCCTTAACTGCATTTCATGAAATTAATGAGTTAAATTGATTTGGTGTATAATGCTAAATTGCAGGGATCTAGACT GACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCTGCAGCTGCACTAATGAAGTCGG GACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGTACTTTTGAGTTACAACAAAAAATAAACTAT ATTTGCTTGTCTTCTAGAGTATGGGAACATCATATGGATCTTCATGTAAATGGTATTGCAGGAGACACAGCCAACAAAAT TGGAACCTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTTCAATTGATC TCTCACTTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGAGGACTTGGA GAGCAGGTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATCTGGGATTAT TACTGAGAAGGTATGTCTTACCTCTTCCTACTCTTGCATCATTTGTATGGGGTTCAGTTGCACTTTTTTCTCTGATCATT TTATGTTCTCTCGGCAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAACA CTTTAAGGGCTGAAAGTGTTTAGTGTCAATGACCTATGGTGGAGTTAGATTTTTCTAACACATTGCATCCATTTTAGATT GGAAAGTATTGTGTTAAATTTTTTGTTTGAGGTTGTGACTTCAGCACAGGATTAGCTTCTTCAATGGAAATGTCCCGGGA AATAAATCGCGGCCTGTTTAATAAACATGTCAATAAGAAATTGGCGGCGATCATGCCCTACATGCTTAAAATCGAATGCC ATGGGTTCTTTGAAAGTCAGTTTGATCACCTGGTTGTATGATAAAATTCAAATATTATGAAGTGTGTTATGTGCTTTATT GGAAATTGCATTAAATAAGGTAATAAAAGTTCTCAGTACTAAGGAAAAACG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0223700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCATCGGGTTCGAACGAACTCACCGGCACCAACACGCTTCAGTCCATTCGCTACAATCGCGGTTCCCTTCAGCT TCTTGATCAGAGAAAACTCCCTCTAGAAACAATTTACTTGGAGATTCGCGATTCAACCGATGGCTGGAATGCCATTCGGG ATATGGTGGTCCGAGGAGCACCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGAT TTTAGTGGGTCGCCCAGTGATGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGT GAACCTATCAGATGCTGCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTTT TTCAGGATTATATAGAGGCTGCTGAAATTATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCT ACTTTTATTCAACACCAAGTTGAGAAGCCTAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACTGCTGG ATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCTTATTGCACAGAAACACGCC CATTCAATCAAGGATCTAGACTGACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCT GCAGCTGCACTAATGAAGTCGGGACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGAGACACAGC CAACAAAATTGGAACCTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTT CAATTGATCTCTCACTTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGA GGACTTGGAGAGCAGGTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATC TGGGATTATTACTGAGAAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAA CACTTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0223700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSGSNELTGTNTLQSIRYNRGSLQLLDQRKLPLETIYLEIRDSTDGWNAIRDMVVRGAPAIAIAAALALAVEVSNLGD FSGSPSDAASFLQNKLEYLVSSRPTAVNLSDAATKLKEVISGAAATASEAKSVFQDYIEAAEIMLVDDVASNRAIGSYGA TFIQHQVEKPKLSVLTHCNTGSLATAGYGTALGVIRALHSGGALERAYCTETRPFNQGSRLTAFELVHDKIPAALIADSA AAALMKSGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRG GLGEQVAASGISVWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQKTL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43475
11 373 363 5.5E-160 –
PANTHER
PTHR43475:SF1
11 373 363 5.5E-160 –
SUPERFAMILY
SSF100950
12 362 351 6.05E-116
IPR037171
Gene3D
G3DSA:1.20.120.420
13 170 158 6.7E-52
IPR027363
Hamap
MF_01678
15 367 353 72.349
IPR005251
TIGRFAM
TIGR00512
16 358 343 5.1E-144
IPR005251
TIGRFAM
TIGR00524
43 358 316 2.1E-106
IPR011559
Pfam
PF01008
57 357 301 5.0E-76
IPR000649
Gene3D
G3DSA:3.40.50.10470
171 374 204 2.2E-73
IPR042529

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0044237
Biological process Cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
Subterm of
GO:0044249
Biological process Cellular biosynthetic process The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0223700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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