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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0223700 |
| Transcript ID | LotjaGi6g1v0223700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|G7IGG7|G7IGG7_MEDTR Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52874761..52877037) extracted from Lotus japonicus Gifu genome v1.2.
AGTTCATCGCATGATGTAGTCTACAATTTCAAACTTTGGTTATAGTAGTAAGTAGTAACAGTGAATGTGGGAAAAAGAAA GCCGATTGAATCTAGACTGTTATCTTAATGCTTTCAATCAATGGATTCAGATATCTAAATTTTCATGACTTTCTCAGGAA TGCCATTCGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTA ATCTAGGTGATTTTAGTGGGTCGCCCAGTGATGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGGTAT TTTCGGTTGTCTACATTGATAATACAACAATCTGCTTATTTTGGATATGGTATTGCCTGGTAACTAAATAGCATTTGGCT TGTTGAGGTGTCTTTTTATGTAGTTGAGGCTGTTATTATAAGTTTCAAACGTTCCTTGTAAGCATGTATGAATTTTAGCT TGATTTTTTCCTTCATGATTCAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCAACAAAACTCAAAGAAGTCATATC TGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTTTTTCAGGTATTACAAAGACTTATTATAATCAAGGAACTTTTGC AAATAAATAATGTTACATTTTGTACCTTTTTGCTCTCTTATTTTGTGTTTGACCATTTGAACCTGAATCTACTGGATTAC TTTAAAGGATTATATAGAGGCTGCTGAAATTATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAG CTACTTTTATTCAACACCAAGTTGAGAAGCCTAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGGTGCTTGCTACAG TACCACCTCTTGTTATTTTAGTACAATCATTCATATCCTTTTTTGTTTATTTGTTTGACAAATGATGTGAGAAAGTCTTT GAAGTTTGAACTCACTTGCAAGTGTTTTTGATTCGTTTCAGTTTAGCTACTGCTGGATATGGTACTGCTCTGGGTGTAAT CCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGTGAGTGCAGTTT TTCAAAGTATTAGTTATATTCAGGGCTGTTTTAGAGACGATACATGTTCTAAGTTACCTTTTAATAGGGGTGGTCTGTAT TAGCTGTTTATTCTGCTACTTGGAATCTTGAATTAGTATTATGGCTTGGCTTGAAACAGAACTGAACTATAATGATGTAC TTATATTTTGGTTTATGGTCCATGTTCAAATTTGTATTTCAGTGATAGTTATAGTTGACCTTTTTGTCTACATAGTCATT CATTTGAAAAAGCGAGAAAATAGTTTGAACCCCTTAAATTAGGATTTCCTTAATGATCGTTTTTTTTTTTGCGGGAGGGG GGGTTGGTTCTGAAGTCAACAATGGAATTTGGTTAGCAGAAAGTAGTTTTGAGAACAAATTTCCAACCTTTTATTAAGTT TTTTTTCCTCTTGAATCTATCTTCAGAATAATATTCTCCTTAACTGCATTTCATGAAATTAATGAGTTAAATTGATTTGG TGTATAATGCTAAATTGCAGGGATCTAGACTGACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCG GATTCTGCTGCAGCTGCACTAATGAAGTCGGGACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGG TACTTTTGAGTTACAACAAAAAATAAACTATATTTGCTTGTCTTCTAGAGTATGGGAACATCATATGGATCTTCATGTAA ATGGTATTGCAGGAGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTT TATGTGGCTGCACCATTGACTTCAATTGATCTCTCACTTTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAA GGAGTTGTTGAACTCACGTGGAGGACTTGGAGAGCAGGTTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATG TCACACCTGCTAACATAATATCTGGGATTATTACTGAGAAGGTATGTCTTACCTCTTCCTACTCTTGCATCATTTGTATG GGGTTCAGTTGCACTTTTTTCTCTGATCATTTTATGTTCTCTCGGCAGGGTGTCATTACAAAGTCATCTGCTGCTGATGC TTTTGACATAAAAGCTTTCATACAAAAAACACTTTAA
CDS sequence (LotjaGi6g1v0223700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCAATCAATGGATTCAGATATCTAAATTTTCATGACTTTCTCAGGAATGCCATTCGGGATATGGTGGTCCGAGG AGCACCTGCTATTGCCATTGCAGCCGCACTCGCCCTGGCTGTGGAGGTATCTAATCTAGGTGATTTTAGTGGGTCGCCCA GTGATGCGGCTTCCTTCCTGCAGAACAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCT GCAACAAAACTCAAAGAAGTCATATCTGGAGCTGCTGCTACCGCTTCAGAGGCCAAAAGTGTTTTTCAGGATTATATAGA GGCTGCTGAAATTATGCTCGTCGATGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTACTTTTATTCAACACC AAGTTGAGAAGCCTAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACTGCTGGATATGGTACTGCTCTG GGTGTAATCCGTGCACTTCATAGTGGAGGAGCTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATC TAGACTGACTGCCTTTGAGTTGGTACATGATAAAATACCAGCAGCTCTTATAGCGGATTCTGCTGCAGCTGCACTAATGA AGTCGGGACGCGTGGATGCTGTTGTTGTGGGGGCGGATCGTGTTGCATCAAACGGAGACACAGCCAACAAAATTGGAACC TACAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTATGTGGCTGCACCATTGACTTCAATTGATCTCTCACT TTCTTCTGGAGAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAGTTGTTGAACTCACGTGGAGGACTTGGAGAGCAGG TTGCTGCATCAGGAATTTCTGTATGGAACCCTGCTTTTGATGTCACACCTGCTAACATAATATCTGGGATTATTACTGAG AAGGGTGTCATTACAAAGTCATCTGCTGCTGATGCTTTTGACATAAAAGCTTTCATACAAAAAACACTTTAA
Protein sequence (LotjaGi6g1v0223700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSINGFRYLNFHDFLRNAIRDMVVRGAPAIAIAAALALAVEVSNLGDFSGSPSDAASFLQNKLEYLVSSRPTAVNLSDA ATKLKEVISGAAATASEAKSVFQDYIEAAEIMLVDDVASNRAIGSYGATFIQHQVEKPKLSVLTHCNTGSLATAGYGTAL GVIRALHSGGALERAYCTETRPFNQGSRLTAFELVHDKIPAALIADSAAAALMKSGRVDAVVVGADRVASNGDTANKIGT YSVALCAKFHNVPFYVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANIISGIITE KGVITKSSAADAFDIKAFIQKTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 335 | 335 | 66.448 | ||
| Gene3D | 7 | 173 | 167 | 7.4E-53 | – | |
| PANTHER | 16 | 341 | 326 | 3.3E-144 | – | |
| PANTHER | 16 | 341 | 326 | 3.3E-144 | – | |
| SUPERFAMILY | 16 | 330 | 315 | 1.3E-105 | ||
| TIGRFAM | 17 | 326 | 310 | 2.9E-132 | ||
| TIGRFAM | 17 | 326 | 310 | 1.4E-105 | ||
| Pfam | 25 | 325 | 301 | 3.7E-76 | ||
| Gene3D | 174 | 339 | 166 | 3.3E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of LotjaGi6g1v0223700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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