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LotjaGi6g1v0225000.2

Overview

Field Value
Gene ID LotjaGi6g1v0225000
Transcript ID LotjaGi6g1v0225000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Tubulin-tyrosine ligase family protein; TAIR: AT1G77550.1 tubulin-tyrosine ligase; Swiss-Prot: sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12; TrEMBL-Plants: tr|A0A151RWF2|A0A151RWF2_CAJCA Tubulin--tyrosine ligase-like protein 12; Found in the gene: LotjaGi6g1v0225000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:53003471..53009783) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGAATGGTAGCCATGGCCGGCGGCGCCAAGAGAATCCGAACCTACGAAGAGTTCGCCCAAGTCCACGCACTGTTACT CGCGTCGTCAGGACTACCGCAGTCACTTTTCCGCCGCCTCTTCCAAAAGCTCGCCGGCGAGACCTTCGACGGCGGAAACC ACTTCCAAATCGAGCCCTGCGAGGACGGACGCATGAGACGCCTCGTTCTCACCTCCGATTCCATGCCCAAGGACTCCGAC GTCTTCCTCATCGATCACGCATGGACCTTCCGACTCCCCGACGCTTACAACCAGGTCCTCCTCACCTTCTCCTTCTCCTT CTTCCAATTCCAAATACAGTTTTCTTCGTTTTCATGCTAAACGGTTATTCATTTGTTTGTTTTTGTGGCGGTTTTAGCTG CTTGAAGTTCCGGGATTGGCTGAGAGGATGGGTTCTTTGATGTGTGTGGATATTGATATGAATTTGGAAGGTGAAGGTGA GGTTAGTGAGAAGCCTGATGTATTGGAAGTTCTCGAAAGCGAGGTTCGCGAGACGAAAGAGAAAGGAGATGGTAAATTGA GATGGTTGGAGCTTGAAGGACTTGACATTGATGATGATATGCTTTTGTCTCTTGACTTATCTTCAAAATTTCCTGTTAGT AACACATTATTCTTATTATTATCATTCATAGTGTTGCTAATGCTATCTATATTTTGATAATGTAACATGCTTTATTGAGC ACTTAGAAATCATGCTTAATTTGAATACTTAACCTTCAGGAATATGATATTGAAGTATTGAACTATCAGCCATTTTTTAT TTTTCATGTCTGTCCTTATGATTTGAATGCTGATGCACTCTCTTCCTGTTTTATTGTTTCAGGATTTAGTGTCGCTTAGC CTATACGGAAACAAGCTCAATAGAGCCGAAGTGGTTGTTCAGGAAGTTAGCAAATTTAAGCATCTTAAAGGACTGTGGCT GAACAATAATCTGGTGCTTAAAGAGTGGTACGTTTTCCGGTATTTGAAATATTCTTAAACCATGTATTCCTGTTATCATG TCACTCATTAGTCCTTATTGTTAGAGGTTTTCAATGAGTTGGATTTATACAATAAACTCCATAAATTGGTTTGATAAGGA CAAAACTTAGATACGGTTTGATCCATGCTGTTTGTTTTTATTGTTGTCCAACAATCATGTCACATTTGACAAAAAAATGG AAGTTGAGAGGAGTTATCACATTAATAAATAGTGAGAAAGTGGGTTGCTGGGTTTCTTATTGAGCAACAGCACCAATAGT ACCCACGAAATAGTAGGTAAGTAGTGTCTTTTTTATAGTGTAGTTTCATGTAAAATCACTTTCAGAATTGAAACCAACCA CCATTGGTTCGGGTATCGGATCCTTATTTTTCGAACCCCAGCTTGATCACCAATTATTATTTAAAAAGTTTCTAAGGTTT AAAATTCATGCATCTTAGACTTTATGCTCAGGTCTAAGACCTCTACTTTTGTCCTTTTCCTTATTTATTTTGATCATGTT TAGTATCTGACAAAATTACTTTACTTCTAGTAATGACAAAATTGCAGGTGCCATTCTTAAGGAGTTACCTGAACTGGAGA TATATAATTCAAATTTTACAAGCAATTTTGGGGAATGGGCCTTGGGCTTTTGTGCAGGGATATATGAAAAGGATAACCCA GCAAGTTCTGATCATGCTGATAGCCCGCTGCAGAGTGTGTCCACTCTTGATATTTCTAATAGAAACATTCATAATTTAAT CAACAAGGTTGAATTCTTTCTTATTCTTATGTTCTATCTGCTTTATGCATCTTTTTTATAGCCATGTTTCAAAAGTATTG GTTGGAGACTTGAATATATTATTTTACGGAATGAAAGTTGATTACATGAGCTAAAAAATCAGGGAATTCTGTATGTCTCC TTGAGTCCTTGCTCAGGAGATGATACTAATTGGTAAATGAAGCATACTCAATAGAAGATGTTAACGTGTGATATTTCATA GCAACTCATTAGTCCCAAATCTGTCTGTTTTGATCTAAATATTTTGATGAGTCCTCTATTCCCCTATGTTTTCAGGCATT TTCACCCATTTTATTTTCATCTCTATCACACTTGAACATTCATGGAAATCCGTTGGAGCAAAACTCGGTTGGTGACTTGT TAGATTTGCTGAGGAGATTCCCTTGCTTATGTTCATTGGGGGTACTTTGATTTATATTATCAGATTATTCCTAAATTGCC TTTGCTGTTTATTTAAATTTTAATTTCCACTTGTTTTGGCCTATGGAAATTTGATCAATTTTAGGTAGATATTCCTGGTC CTCTTGGAGGAAGTGCCATTGAAATCCTGGAATCTCTTCCGAACATTTCTGAACTAAATGGTATTAGTGCATCCCAAATA TTGGAAACTAGTAAGCAGGTCATTGATTCAGCACTTCTTCCTCGTGTTTCTGAATGGACTCCTGATGAGCCTCTTGCTGA CCGTATTGTAAATGGAATGTGGAAATATCTAATGACTTATAGACTTGCAGATGAAGAAAAGTTAGATGAGACGTCTGTAT GGTATGACCTGCATTTGACTTGTTTTACAGTTTCGTTCTAATGCAGTACTTGCTTTCTTTTGATCAGTGTATGCACTGTT GTAAATTTTTGCATTTCTCATTCAAATGCCAAAAAATCTTAAAGGCAGGCTGATTAATGATTATACTTTACTATATAGTA CTAGAATCAACGAGTCAATGTTTGAGCACTCAATTTTTTTGGTTCCGTACATTAAATGGAATGAAACAATATAGAAGTCT CCATTAATCATGAATGATCAATTTGATATTTCCCACCAAGAAACTTAAAGCTTATTTTTTATATCTTTTAGGTATGTGAT GGATGAGCTTGGTTCTGCTTTGCGGCACAGTGATGAGCCAAATTTCAGAGTGGCACCTTTTCTTTTCATGCCAGAGGGTA ATCTGGCATCAGCTGTGAGGTTATCTTCTATATTTTCTTATTAAGATTTGTACTTTGACTTGGAAGTCAGGTTTTCATGC TATTAGAATATACCTGCTGCTGTACTGTATAATCGTAGTTACATAATGTGTAACATCTTTTATTATGAGTAAATTTTCAA TTATGTATTTTACTGTTTCATTCTTGCTCATTAATGTATCCTGACTGCATTAGCTGCAGAACTCATGTTAGAGACTCCTA AGTGTGAAGCCTCCCCCCCTCCCCTCTTTTTTTAGTGAATTACATGTATTTATGCATCTGAATTTTTAATAATTCAAGAT TGGTCATCTTATAAGTAATAACTCTCCCATTTCCCCAGCTTTTCTATTCTATGGCCAACTCAAAATTTGCAGAAAGGTGA TGAATGCACTCGAGATTTTCTTCTTGGTATCGGGGAGGATAAACAACGTTCTGCTAGACTTACTGCCTGGTTCCACACAC CAGAGAACTATTTTATCCAAGTATTTCTTCTACTTGTAAAATTTATCAGATTCTGATTTGTGGTTAAAAATGTATTATAT GAAGGTATCAGGAAAGTTTGAAGCTAATTTAGTTTACTGCTTTCAGGAGTTTGAGAAGCACAATCAGAAATTGGGATCCA CAAGTTTGATCCCACCCACTGTGCAGTCTTCTGAGACTAGAAGTATTCATCAACCTGATGGGCGTCCTTTACGTGTTTAC ACAGATATACCTCATGTGGAAGAAAACTTGACGCATCCGGAGTTTGCAATTAGTAAGTTTGATGCATGCCTGGAGTAGAT ACTAGTTCAAAATATTGAGATTGATAGAAAGAAAGTAAGAAAAATTTATTGTATATCCTCCTCCAACACAGGATGGATGG ATGTCAAGAAGAGAAAGGATGAAATACAACAGTGTTTTCAGGAATTCGAGGCCTGTCTCTCTCACCCAAAACTAACAGAT CAACTGAACTAATTAAGGGCTTTAATATGTGCCTCTGTCACAGCCTAACTAATTAACACTGACAAATTTCCTTACAAGTT ACAAGGCTTGCTTTCAGCTAACAACGCCTAACTAACAGGGCTTGACCCAATTGATTCATTGGTCAAACTGTTGTAAGCTT CCTGATTGGGTCCTGCTCCTAACAGCATGCTTGAACTGTCTTAATTATTTTCCTTGCATCAGTTCATAATTAATAACATG ATTATCACGTTATTTGGAACATATTGAATATATGTCAATCTTCAAGTAAAGAGCCTAAATCAAAATCCCTGTTTTTGATT TGAACCTTTTTCTCTTTCTGCATAGAATGGACATCTTTTGGTTATCACAAAATTCCCTTGGATTTGATTTTATGGTTGTC TCTACATTTAAAAAACTTTACATTGTACGGCTGACCTCCTCCCTCTCCTTTTGATTGTTTGTTATCCTACAGCAAAGGAA CCAAAAGATGCAGATATAATATGGACATGTATGCAGATAGATGAGGATACAAAGAAGGCCACAGGAATAACAGATCAGCA ATACATTAATCAATTTCCTTTTGAGGCTTGTCTTGTCATGAAACATCATTTAGCGGAGACAATTCAGAAGGTGATAATAG TTATCTAGCATTGTATGTTGATGCAGATGACATTATCCTAAGTAACTAAACTGTGTACATCATCCATTTATAGTAAAATA CCATCATACTCCTCAAAGAAATATGTACTATTTGTCCTGGCATGCAACAATTTTTATTTTATTTTTTGAAGTCAAACTTA CAATTTACAAATGAATTGAAGTGTTGGTGTCTTTTCTCATTTGAGGCTTTTTAGTATCTTATTTTTTTGTTTTTACATTG TTACAGGCACTTGGATCTCCTCAATGGTTGCAGCATACTTATAATCTTGAAACACATCTATCTCAACTTATTGGTGACTA TTATTTACGCAAAAGAGAAGGACAAGACAATCTTTGGATCCTAAAACCCTGGAACATGGCCCGAACTATTGATACTACTG TAACTGATAATTTACCTGCGATAATCCGTCTCATGGAAACTGGTCCAAAAATTTGCCAGAAGTATATTGAAAAACCTGCT TTGTTCCAGGGGAAAAAGTTTGATCTCCGTTACATAGTGTTGGTTCGGAGCATGCACCCTTTGGAGATATTCCTGTCAGA TTGCTTCTGGGTATACTGATTCTTCTTTTGAGCCCTACCTGTAACTTAATAACTTAATATGACCTTTGAAGAACATTTGC GTCAGCCTCTCTTTATTTTATTTTTATGCCTTAAAAGATCCTAACGGCAATTGGTTAATAATTTTTTCAGGTCAGGATAG CCAACAACCAATATTCTTTGGAAAGACGTAGTTTATTTGAATATGAAACTCATTTCACTGTCATGGTATGTCTCAATTAC CATATTATTTAGCAACAAGTTCTTCAGTTGAAAATTTGACTGAGTATTGAATATTTCAGTGCTTTAGTTCCTTTTTGCAA CAAGTATTAACATAGTCAATGTCTGGATCTCAGAATTACCGTGGAAAAATAAATCACAAGAATATCAAGGATTTTGTGAA GGAATTTGAGGAAGAACATCAAGGTAATGGGGACCGTCCCCTGTTTATCTTCTGCCACATTTGGGTTTTTTTTAGAATCT TTCATAGCATCATATACATGATAAATTCTTGATTCAAATTCCTGCCACTGCATGTATCTCTTGCAGTTAAATGGTTGGAT ATACATACAAGAGTAAGGAATATGATTCGATCAGTGTTTGAGGCAGCCGCTGTTGCACATCCAGAGATGCATAGTCCAAC ATCAAGAGCAATGTACGGTGTAGATGTTATGTTGGACAGCTCTTTCCAACCCAAGTTACTAGAGGTCGGTAACTGAAGCA GCGATCCTCATCTGATGCTCCTTTTAATAACAACAAGTTTTATATTTATAGAATGTTTGAATCAGCTTTTATTGCCTCAG AAATAATTCTGGCATTCAGAAACTACTTACAAAAGTTTATCCCAGATTGATTTTAAGTTTAGAATCAATTGTAGAAGGAT TTTCAATCACACACGTAATCTAAACCCCTTAAGTGTTAAGGATGCCAGTTGATGTCCAACTTGTCTTATACTGAGTTATT TGTTCAAGGTGTATTTCCTATTATGAGAATTCTAGAATTATATGTATGACTTATATTTCCTTATGCAGGTGACGTACTGC CCTGATTGTACAAGAGCTTGCAAATATGACATGGATATCGTGGTTGGAGAGGGAGGTGTTTCCAAAGGTTGTGATTTCTT CAACAATGTCTTCAGGTGTCTCTTTTTGGATGAAATTTCGCAAGTTAGCCCATTGTAGTCTAGTGCTTGCCAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0225000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAGCCATGGCCGGCGGCGCCAAGAGAATCCGAACCTACGAAGAGTTCGCCCAAGTCCACGCACTGTTACTCGCGTC GTCAGGACTACCGCAGTCACTTTTCCGCCGCCTCTTCCAAAAGCTCGCCGGCGAGACCTTCGACGGCGGAAACCACTTCC AAATCGAGCCCTGCGAGGACGGACGCATGAGACGCCTCGTTCTCACCTCCGATTCCATGCCCAAGGACTCCGACGTCTTC CTCATCGATCACGCATGGACCTTCCGACTCCCCGACGCTTACAACCAGCTGCTTGAAGTTCCGGGATTGGCTGAGAGGAT GGGTTCTTTGATGTGTGTGGATATTGATATGAATTTGGAAGGTGAAGGTGAGGTTAGTGAGAAGCCTGATGTATTGGAAG TTCTCGAAAGCGAGGTTCGCGAGACGAAAGAGAAAGGAGATGGTAAATTGAGATGGTTGGAGCTTGAAGGACTTGACATT GATGATGATATGCTTTTGTCTCTTGACTTATCTTCAAAATTTCCTGATTTAGTGTCGCTTAGCCTATACGGAAACAAGCT CAATAGAGCCGAAGTGGTTGTTCAGGAAGTTAGCAAATTTAAGCATCTTAAAGGACTGTGGCTGAACAATAATCTGGTGC TTAAAGAGTGTAATGACAAAATTGCAGGTGCCATTCTTAAGGAGTTACCTGAACTGGAGATATATAATTCAAATTTTACA AGCAATTTTGGGGAATGGGCCTTGGGCTTTTGTGCAGGGATATATGAAAAGGATAACCCAGCAAGTTCTGATCATGCTGA TAGCCCGCTGCAGAGTGTGTCCACTCTTGATATTTCTAATAGAAACATTCATAATTTAATCAACAAGGCATTTTCACCCA TTTTATTTTCATCTCTATCACACTTGAACATTCATGGAAATCCGTTGGAGCAAAACTCGGTTGGTGACTTGTTAGATTTG CTGAGGAGATTCCCTTGCTTATGTTCATTGGGGGTAGATATTCCTGGTCCTCTTGGAGGAAGTGCCATTGAAATCCTGGA ATCTCTTCCGAACATTTCTGAACTAAATGGTATTAGTGCATCCCAAATATTGGAAACTAGTAAGCAGGTCATTGATTCAG CACTTCTTCCTCGTGTTTCTGAATGGACTCCTGATGAGCCTCTTGCTGACCGTATTGTAAATGGAATGTGGAAATATCTA ATGACTTATAGACTTGCAGATGAAGAAAAGTTAGATGAGACGTCTGTATGTGATGAGCCAAATTTCAGAGTGGCACCTTT TCTTTTCATGCCAGAGGGTAATCTGGCATCAGCTGTGAGCTTTTCTATTCTATGGCCAACTCAAAATTTGCAGAAAGGTG ATGAATGCACTCGAGATTTTCTTCTTGGTATCGGGGAGGATAAACAACGTTCTGCTAGACTTACTGCCTGGTTCCACACA CCAGAGAACTATTTTATCCAAGAGTTTGAGAAGCACAATCAGAAATTGGGATCCACAAGTTTGATCCCACCCACTGTGCA GTCTTCTGAGACTAGAAGTATTCATCAACCTGATGGGCGTCCTTTACGTGTTTACACAGATATACCTCATGTGGAAGAAA ACTTGACGCATCCGGAGTTTGCAATTACAAAGGAACCAAAAGATGCAGATATAATATGGACATGTATGCAGATAGATGAG GATACAAAGAAGGCCACAGGAATAACAGATCAGCAATACATTAATCAATTTCCTTTTGAGGCTTGTCTTGTCATGAAACA TCATTTAGCGGAGACAATTCAGAAGGCACTTGGATCTCCTCAATGGTTGCAGCATACTTATAATCTTGAAACACATCTAT CTCAACTTATTGGTGACTATTATTTACGCAAAAGAGAAGGACAAGACAATCTTTGGATCCTAAAACCCTGGAACATGGCC CGAACTATTGATACTACTGTAACTGATAATTTACCTGCGATAATCCGTCTCATGGAAACTGGTCCAAAAATTTGCCAGAA GTATATTGAAAAACCTGCTTTGTTCCAGGGGAAAAAGTTTGATCTCCGTTACATAGTGTTGGTTCGGAGCATGCACCCTT TGGAGATATTCCTGTCAGATTGCTTCTGGGTCAGGATAGCCAACAACCAATATTCTTTGGAAAGACGTAGTTTATTTGAA TATGAAACTCATTTCACTGTCATGAATTACCGTGGAAAAATAAATCACAAGAATATCAAGGATTTTGTGAAGGAATTTGA GGAAGAACATCAAGTTAAATGGTTGGATATACATACAAGAGTAAGGAATATGATTCGATCAGTGTTTGAGGCAGCCGCTG TTGCACATCCAGAGATGCATAGTCCAACATCAAGAGCAATGTACGGTGTAGATGTTATGTTGGACAGCTCTTTCCAACCC AAGTTACTAGAGGTGACGTACTGCCCTGATTGTACAAGAGCTTGCAAATATGACATGGATATCGTGGTTGGAGAGGGAGG TGTTTCCAAAGGTTGTGATTTCTTCAACAATGTCTTCAGGTGTCTCTTTTTGGATGAAATTTCGCAAGTTAGCCCATTGT AG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0225000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAMAGGAKRIRTYEEFAQVHALLLASSGLPQSLFRRLFQKLAGETFDGGNHFQIEPCEDGRMRRLVLTSDSMPKDSDVF LIDHAWTFRLPDAYNQLLEVPGLAERMGSLMCVDIDMNLEGEGEVSEKPDVLEVLESEVRETKEKGDGKLRWLELEGLDI DDDMLLSLDLSSKFPDLVSLSLYGNKLNRAEVVVQEVSKFKHLKGLWLNNNLVLKECNDKIAGAILKELPELEIYNSNFT SNFGEWALGFCAGIYEKDNPASSDHADSPLQSVSTLDISNRNIHNLINKAFSPILFSSLSHLNIHGNPLEQNSVGDLLDL LRRFPCLCSLGVDIPGPLGGSAIEILESLPNISELNGISASQILETSKQVIDSALLPRVSEWTPDEPLADRIVNGMWKYL MTYRLADEEKLDETSVCDEPNFRVAPFLFMPEGNLASAVSFSILWPTQNLQKGDECTRDFLLGIGEDKQRSARLTAWFHT PENYFIQEFEKHNQKLGSTSLIPPTVQSSETRSIHQPDGRPLRVYTDIPHVEENLTHPEFAITKEPKDADIIWTCMQIDE DTKKATGITDQQYINQFPFEACLVMKHHLAETIQKALGSPQWLQHTYNLETHLSQLIGDYYLRKREGQDNLWILKPWNMA RTIDTTVTDNLPAIIRLMETGPKICQKYIEKPALFQGKKFDLRYIVLVRSMHPLEIFLSDCFWVRIANNQYSLERRSLFE YETHFTVMNYRGKINHKNIKDFVKEFEEEHQVKWLDIHTRVRNMIRSVFEAAAVAHPEMHSPTSRAMYGVDVMLDSSFQP KLLEVTYCPDCTRACKYDMDIVVGEGGVSKGCDFFNNVFRCLFLDEISQVSPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46088
9 852 844 1.6E-255
IPR027749
Gene3D
G3DSA:3.80.10.10
124 242 119 7.8E-8
IPR032675
SUPERFAMILY
SSF52047
149 357 209 5.26E-14 –
Gene3D
G3DSA:3.80.10.10
263 397 135 1.6E-5
IPR032675
ProSiteProfiles
PS51221
517 853 337 33.221
IPR004344
Pfam
PF03133
571 821 251 4.3E-52
IPR004344
Gene3D
G3DSA:3.30.470.20
588 809 222 8.4E-27 –
Gene3D
G3DSA:3.30.1490.20
605 671 67 8.4E-27
IPR013815
SUPERFAMILY
SSF56059
632 810 179 8.3E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006464
Biological process Cellular protein modification process The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0225000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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