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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0227900 |
| Transcript ID | LotjaGi6g1v0227900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G57070.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|P12255|FHAB_BORPE Filamentous hemagglutinin; TrEMBL-Plants: tr|I1L1M1|I1L1M1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53399566..53402074) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAAGCATATTCACATGATGTATATAAACAAAAGTTGATGTATACATCCATCCAAAGTAGTAGAATTTTTCATATATT CATCCAAAATCAAGGGAAATAAATCAAGCAAAGAGGAACAACAAGCAACCTCCATCACTCAACTCAACTGTTCCCATCCA TCCACGATGCCCCAACCCTTCATCAGCCCTCCACTTCTCATCATTCTCCTCCCCATCCTCGCCTTAACTCTCTTCTTCAT CGCCGTGCCACCACTCCTCTCCGCCGCCTCCAACGCTCTCCGCCCTGTCTCCGTCGTCAAGACCAGCTGGGACTCCCTCA ACATCCTCCTCGTCGTACTTGCCATCTGCTGCGGCGTATTCGCCAGGCGTAACGACGAGGAGCCATCCCCGCATAACGAC GCCGTGCCGGAACAAAATGGAGCTTCATCGTCGTCGGTGGAAAGAGTTGGCTACGAGCTGCCGTCGCCGCCGCAGCAGCA GCACTGGTTTGGATTCCCTGATGAGACGAAGGTCTACGATGCCGCCACCCCGACAACCGGCGTTACCCGGCTGAGAAGGA GCAGCAGCTCGTACCCAGATCTGCGGCAGTGGGATTCCGGCGACGAGCGTTACCAGTTTCGCTTCTTCGATGACTTCGAA ATCGACAAGCAGACGCAGTCACGCTCGCCGCTGGTGGAGCACCGTCAACGGTGGCCGGAACCGGAAACTCATGAAGACAA AGAAGAAGAAGTTCGAGTTAAGGAAATCCCGGTGGATACCTTTGAAGTTCGTCCTCCACCGCATGTGAAGTCAGCCGCGC CTCCTCCTCCTCCTCCGCCACCGCCACCGCCGCCTCCTCCGGCGGCGGACTCAGCTCGTCGAAATCCGAGACGGACACCT CCGAAGATGGAAAATGAAATAACTGAAGTGGATGATAGCGAGTTCACGAGGGTCCAGTCTCCTCCGACGCCACCGTCACC TCCGCGGCTGTCGGTGAAAGCACGTTCGGAGCACAAGAAGAGTGAGCGAAGGAAGAGTAACGTGAAGAGGGAGATAGCGA TGGTTTGGGCTTCAGTACTCTCCAACCCGAGAAAGCGAAAGAAGAAACAGAGAGCCAAAACCGATGAAAGTCACAGTCAA CATTACCAAAATGTTGATGAAGTAACAAACAACACGGCAGCGCCACCACCTCCGCCGCCACCGCCACCGCCACCTCCGCC TCCGCCGTCAGTTTTTCACAGTTTGTTTAGAAAGGGACTGGGGAAGAATAAGAAAATTCATTCATTGTCAGCGCCGCCAC CACCGCCGCCGCTGCCGCCGTTGACGTCTTCCCGGAGATGGTCAACACGCAAGAGCCAGATCCCAATGCCGCCGGCTCCT CCGCCGGAGCCACCCCGCCGGAGAAACTCCGGGAGGCCACCATTGCCAAACAAGGTAGACAATAGCAACTCCGTCCATGA GGCCATAAACACCGGCAACCAGTCGCCACTGATTCCGGCCCCGCCGCCGCCTCCGCCATTCAAGATGACTGCAATGAAGT TCACTGTTCGTGGTGGTTTTGTTAATGTACGTAGCAACCAGAGCTCGCGAAGTAGCTCGCCGGAAAGGGAGCACATTGAT GTGGAAGTGGCAAACATGACTACTAGTACAACCACCACCAACACTGCCACCGCCACCGCTGAAGTGGGTGGGCCCGTTTT CTGTCCCAGCCCTGATGTGAATTTGAAGGCTGCAACTTTCATTGCTCGGCTGAGGGGAGAGTGGAGGCTGGAGAAGCTCA ACTCTATCAAGGAGAAAAGCAATGGCTCATTGCCTCCTCCTGTTTAAGAAATGAGGCTCTAATTATGGTTTTTTAGTTCA GTTATTAGAGCCTGATGAAGAGAAATTATGATGCAGAATCTTGGTTTTGAGTTTGCTTGGTTTTAATTTTTCAGATACTT TTGATTGATGGATGGCATTGGTATTGGCATTTTGTTATGATCCTATAGATGCATTAGAATTTACCAATAGCAGATTTGTA TAGGATGATATATAACTGGGGTTCTGATAGTGTTTTTATGTGCTATTTGGAGCCTCTAGTAGATTTATTGGGAGTATGAG CTTTTGGTTTGCCAGTTTGTATGTTTCTATAATGTGCACTGAGCCTCTGATTGTATAGTTATTGAACTTTTTAATCAATA TCTTTCATTCTCCCTGGCTCTTGGAAGTGATACAATGTATTTGTTGACTACTAGAGGTGATTTTCATTTTGTAGTGGATG TTTTAAGCTAGCTGGATTCTACAAGACTTGTCAGTTGCGTGTTGTGAAATGTTTTAGGATTTGTGATGTATACATTGAGG ATTAAAGATCACAAGGGAAAGAAAGGGTTTCAATTATCAAGCTTGCAGTGTAGTTTTCAAAGCCTAAAGAAGAACCACTT CTGCTTAGAATCTTTGCTTTCTCTTGGTCAGGAAAATATGAACTGTCCATGTACTTAATCCTAATCCATGCAAACTACAT CCGAGCCACAATTTTTCATTATTAAATAA
CDS sequence (LotjaGi6g1v0227900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCAACCCTTCATCAGCCCTCCACTTCTCATCATTCTCCTCCCCATCCTCGCCTTAACTCTCTTCTTCATCGCCGT GCCACCACTCCTCTCCGCCGCCTCCAACGCTCTCCGCCCTGTCTCCGTCGTCAAGACCAGCTGGGACTCCCTCAACATCC TCCTCGTCGTACTTGCCATCTGCTGCGGCGTATTCGCCAGGCGTAACGACGAGGAGCCATCCCCGCATAACGACGCCGTG CCGGAACAAAATGGAGCTTCATCGTCGTCGGTGGAAAGAGTTGGCTACGAGCTGCCGTCGCCGCCGCAGCAGCAGCACTG GTTTGGATTCCCTGATGAGACGAAGGTCTACGATGCCGCCACCCCGACAACCGGCGTTACCCGGCTGAGAAGGAGCAGCA GCTCGTACCCAGATCTGCGGCAGTGGGATTCCGGCGACGAGCGTTACCAGTTTCGCTTCTTCGATGACTTCGAAATCGAC AAGCAGACGCAGTCACGCTCGCCGCTGGTGGAGCACCGTCAACGGTGGCCGGAACCGGAAACTCATGAAGACAAAGAAGA AGAAGTTCGAGTTAAGGAAATCCCGGTGGATACCTTTGAAGTTCGTCCTCCACCGCATGTGAAGTCAGCCGCGCCTCCTC CTCCTCCTCCGCCACCGCCACCGCCGCCTCCTCCGGCGGCGGACTCAGCTCGTCGAAATCCGAGACGGACACCTCCGAAG ATGGAAAATGAAATAACTGAAGTGGATGATAGCGAGTTCACGAGGGTCCAGTCTCCTCCGACGCCACCGTCACCTCCGCG GCTGTCGGTGAAAGCACGTTCGGAGCACAAGAAGAGTGAGCGAAGGAAGAGTAACGTGAAGAGGGAGATAGCGATGGTTT GGGCTTCAGTACTCTCCAACCCGAGAAAGCGAAAGAAGAAACAGAGAGCCAAAACCGATGAAAGTCACAGTCAACATTAC CAAAATGTTGATGAAGTAACAAACAACACGGCAGCGCCACCACCTCCGCCGCCACCGCCACCGCCACCTCCGCCTCCGCC GTCAGTTTTTCACAGTTTGTTTAGAAAGGGACTGGGGAAGAATAAGAAAATTCATTCATTGTCAGCGCCGCCACCACCGC CGCCGCTGCCGCCGTTGACGTCTTCCCGGAGATGGTCAACACGCAAGAGCCAGATCCCAATGCCGCCGGCTCCTCCGCCG GAGCCACCCCGCCGGAGAAACTCCGGGAGGCCACCATTGCCAAACAAGGTAGACAATAGCAACTCCGTCCATGAGGCCAT AAACACCGGCAACCAGTCGCCACTGATTCCGGCCCCGCCGCCGCCTCCGCCATTCAAGATGACTGCAATGAAGTTCACTG TTCGTGGTGGTTTTGTTAATGTACGTAGCAACCAGAGCTCGCGAAGTAGCTCGCCGGAAAGGGAGCACATTGATGTGGAA GTGGCAAACATGACTACTAGTACAACCACCACCAACACTGCCACCGCCACCGCTGAAGTGGGTGGGCCCGTTTTCTGTCC CAGCCCTGATGTGAATTTGAAGGCTGCAACTTTCATTGCTCGGCTGAGGGGAGAGTGGAGGCTGGAGAAGCTCAACTCTA TCAAGGAGAAAAGCAATGGCTCATTGCCTCCTCCTGTTTAA
Protein sequence (LotjaGi6g1v0227900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQPFISPPLLIILLPILALTLFFIAVPPLLSAASNALRPVSVVKTSWDSLNILLVVLAICCGVFARRNDEEPSPHNDAV PEQNGASSSSVERVGYELPSPPQQQHWFGFPDETKVYDAATPTTGVTRLRRSSSSYPDLRQWDSGDERYQFRFFDDFEID KQTQSRSPLVEHRQRWPEPETHEDKEEEVRVKEIPVDTFEVRPPPHVKSAAPPPPPPPPPPPPPPAADSARRNPRRTPPK MENEITEVDDSEFTRVQSPPTPPSPPRLSVKARSEHKKSERRKSNVKREIAMVWASVLSNPRKRKKKQRAKTDESHSQHY QNVDEVTNNTAAPPPPPPPPPPPPPPPSVFHSLFRKGLGKNKKIHSLSAPPPPPPLPPLTSSRRWSTRKSQIPMPPAPPP EPPRRRNSGRPPLPNKVDNSNSVHEAINTGNQSPLIPAPPPPPPFKMTAMKFTVRGGFVNVRSNQSSRSSSPEREHIDVE VANMTTSTTTTNTATATAEVGGPVFCPSPDVNLKAATFIARLRGEWRLEKLNSIKEKSNGSLPPPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 4 | 539 | 536 | 3.2E-143 | – | |
| PANTHER | 4 | 539 | 536 | 3.2E-143 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 10 | 25 | 16 | - | – | |
| Phobius | 26 | 33 | 8 | - | – | |
| Phobius | 34 | 48 | 15 | - | – | |
| Phobius | 49 | 66 | 18 | - | – | |
| Phobius | 67 | 546 | 480 | - | – | |
| MobiDBLite | 71 | 96 | 26 | - | – | |
| MobiDBLite | 80 | 94 | 15 | - | – | |
| MobiDBLite | 163 | 447 | 285 | - | – | |
| MobiDBLite | 163 | 199 | 37 | - | – | |
| MobiDBLite | 206 | 229 | 24 | - | – | |
| MobiDBLite | 233 | 251 | 19 | - | – | |
| MobiDBLite | 330 | 350 | 21 | - | – | |
| MobiDBLite | 392 | 409 | 18 | - | – | |
| MobiDBLite | 413 | 433 | 21 | - | – | |
| Pfam | 509 | 536 | 28 | 4.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0227900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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