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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0228700 |
| Transcript ID | LotjaGi6g1v0228700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A151T5B8|A0A151T5B8_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi6g1v0228700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53468566..53470710) extracted from Lotus japonicus Gifu genome v1.2.
AAACGTGAAATCTCACATTCAAAATCCAACCACAATATCACATGGAAATCGGTGGTCCAATCCCATTTCTTACCCAAGAA GACTACTCTCACTTCTACCACCTCTTCCAAGACATGGACTCCAACAACAACAACAACAATCAAAACAACAAAGGTGGTGG AGAAGGAGAACAAGGAGGAGGAGACAAAGAAAAACCAAAAAATGCTACTAGCAACTTGAAGGATATCATTACTTCCCTCA TTCTACTAGAAGAGGAAGAAAACCAAGACCAACTGAACCGGGCGGTCGACTCAGACCAACACCGAGCCACATTCGACGCA AATTTCAACCACCAAACCCAAGCCATGAACGATTACATGACCCAATCACAAGCCCATTACGCCCAGCTGGACGAGCTCGA TCATTCTAGAGCCAAGCGGGCTCGTCGCTCTACCGCTGCTGTGGCCGCCGCCGCAGCGGCGGCCATTCCCGAAGATTCCA GTTCCCTCCAGCCCGGTTCGACCAGTCCAGTTCAAGTCCAGCAGCAACAGCAGCAGCATCACAGGAGGCTGTGGGTGAAG GACCGGTCCAAGGACTGGTGGGAGCGGTGCAGCCGGGGGGAGTTTCCAGAAGAGGATTTCCGGCGGTGGTTTCGGATGAG CAGAGCAACATTCGACATGATCTGCAACGAGCTTGACTCAGCTGTGACGAAGAAGAACACCATGCTCCGCGACGCCATCC CGGTCCAGCAACGTGTGGCCGTATGCATATGGCGGCTCGCCACCGGCGACCCGCTCCGGTTGGTGTCGAAGAGATTCGGG CTAGGCATCTCCACGTGCCATAAACTGGTGCTTGAAGTCTGCGCCGCCATAAAAACCGTTCTGATGCCGAAGTTTCTCCA CTGGCCTGATGAGGAAACCATGAAGAGGATCAAGCGTGAGTTTGAAGGAATCTCCGGCACTCCGGGGATTCCGAATGTTG GCGGCGCAATGTACACCACCCACATTCCCATCATTGCTCCTAAGGCGAGCGTGGGCACTTATTTCAACAAGAGGCACACA GAGAGAAACCAAAAAACCAGCTACTCAATCACGGTCCAGGGTGTGGTGGATGCTAAAGGTGTTTTCAGAGACGTGTGCAT TGGGTATCCAGGTTCATATCCCGATGATCAGGTTCTCGAGAATAGCGCTTTATACGAGAGAGCTACCCGGGGGAGCTTAA AGGGTGTTTGGATTGTTGGCAATTCCGGACACCCTCTCATGGATGGGGTTCTGGTGCCATACACTCACCAGAACCTTACA TGGACACAACACGCGTTCAATGAAAAAGTTGCGGACATTCAAATGGTCGCGAAGGAGGCTTTTGCCAGGTTGAAAGGTAG GTGGGCTTGTTTGCAGAAGAGAACAGAGGTCAAGCTCCAAGATTTGCCGGTGCTACTTGGAGCTTGCTGTGTTCTCCATA ATATATGTGAGATGAGGAGCGAAAAGATGGATCCGGAATGGAAGTTTGACCTTTTTGACGATGAGATGGTGGCCGAGAAA AGCGTGCGCTCTAACGTAGCCGCGCAGGCTAGAGATCAAATAGCTCACTATTTGTTGCACCATGGCCGTGCTGGCACTGG TTTTTTGTAGCTCTTGCTCTATTTGCTTGTTAATGTTATAGTCACTCAATAGAGAATATAAGATGTTTTGATATTGGTCA AATTAAAATGCATAAGAAAAGGACAACATGTGTAATATAATGTAATCAACTAACTATAAATTGTACATAGAGAGATTTTT GGTTGAATTATGTTAGACCTGAAATTGATTACGTGACAATTGACAATTCTTCTTCTACCTTGTGCTGTGTCCCGCTATGT CTGACACGAAAACAGATTTTGACTTTTGACTTTTGTCGGGTCAGCAATGTTGGGACCTGGGACTCATGTGACGCTGTCCC TTACATCAGGTGCAAAGGTACTCCAGGATTAGTTTGTTTGCATGTTCAAGATTTCATTAGCTACGACTTCAAAGTGCGTT ACGTTTAATTAGAAATTGTGATTGCAAACTGCAATTTAAAACTGTTGTTTCTGCATAGAGCATGGACTTAAAGAATGACA ATGGAATTTTTGAAGAGTGTTTGCATTTGGAATATTGGTGGTCTTGGGATGCGTTTTGAACTCTT
CDS sequence (LotjaGi6g1v0228700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCGGTGGTCCAATCCCATTTCTTACCCAAGAAGACTACTCTCACTTCTACCACCTCTTCCAAGACATGGACTC CAACAACAACAACAACAATCAAAACAACAAAGGTGGTGGAGAAGGAGAACAAGGAGGAGGAGACAAAGAAAAACCAAAAA ATGCTACTAGCAACTTGAAGGATATCATTACTTCCCTCATTCTACTAGAAGAGGAAGAAAACCAAGACCAACTGAACCGG GCGGTCGACTCAGACCAACACCGAGCCACATTCGACGCAAATTTCAACCACCAAACCCAAGCCATGAACGATTACATGAC CCAATCACAAGCCCATTACGCCCAGCTGGACGAGCTCGATCATTCTAGAGCCAAGCGGGCTCGTCGCTCTACCGCTGCTG TGGCCGCCGCCGCAGCGGCGGCCATTCCCGAAGATTCCAGTTCCCTCCAGCCCGGTTCGACCAGTCCAGTTCAAGTCCAG CAGCAACAGCAGCAGCATCACAGGAGGCTGTGGGTGAAGGACCGGTCCAAGGACTGGTGGGAGCGGTGCAGCCGGGGGGA GTTTCCAGAAGAGGATTTCCGGCGGTGGTTTCGGATGAGCAGAGCAACATTCGACATGATCTGCAACGAGCTTGACTCAG CTGTGACGAAGAAGAACACCATGCTCCGCGACGCCATCCCGGTCCAGCAACGTGTGGCCGTATGCATATGGCGGCTCGCC ACCGGCGACCCGCTCCGGTTGGTGTCGAAGAGATTCGGGCTAGGCATCTCCACGTGCCATAAACTGGTGCTTGAAGTCTG CGCCGCCATAAAAACCGTTCTGATGCCGAAGTTTCTCCACTGGCCTGATGAGGAAACCATGAAGAGGATCAAGCGTGAGT TTGAAGGAATCTCCGGCACTCCGGGGATTCCGAATGTTGGCGGCGCAATGTACACCACCCACATTCCCATCATTGCTCCT AAGGCGAGCGTGGGCACTTATTTCAACAAGAGGCACACAGAGAGAAACCAAAAAACCAGCTACTCAATCACGGTCCAGGG TGTGGTGGATGCTAAAGGTGTTTTCAGAGACGTGTGCATTGGGTATCCAGGTTCATATCCCGATGATCAGGTTCTCGAGA ATAGCGCTTTATACGAGAGAGCTACCCGGGGGAGCTTAAAGGGTGTTTGGATTGTTGGCAATTCCGGACACCCTCTCATG GATGGGGTTCTGGTGCCATACACTCACCAGAACCTTACATGGACACAACACGCGTTCAATGAAAAAGTTGCGGACATTCA AATGGTCGCGAAGGAGGCTTTTGCCAGGTTGAAAGGTAGGTGGGCTTGTTTGCAGAAGAGAACAGAGGTCAAGCTCCAAG ATTTGCCGGTGCTACTTGGAGCTTGCTGTGTTCTCCATAATATATGTGAGATGAGGAGCGAAAAGATGGATCCGGAATGG AAGTTTGACCTTTTTGACGATGAGATGGTGGCCGAGAAAAGCGTGCGCTCTAACGTAGCCGCGCAGGCTAGAGATCAAAT AGCTCACTATTTGTTGCACCATGGCCGTGCTGGCACTGGTTTTTTGTAG
Protein sequence (LotjaGi6g1v0228700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIGGPIPFLTQEDYSHFYHLFQDMDSNNNNNNQNNKGGGEGEQGGGDKEKPKNATSNLKDIITSLILLEEEENQDQLNR AVDSDQHRATFDANFNHQTQAMNDYMTQSQAHYAQLDELDHSRAKRARRSTAAVAAAAAAAIPEDSSSLQPGSTSPVQVQ QQQQQHHRRLWVKDRSKDWWERCSRGEFPEEDFRRWFRMSRATFDMICNELDSAVTKKNTMLRDAIPVQQRVAVCIWRLA TGDPLRLVSKRFGLGISTCHKLVLEVCAAIKTVLMPKFLHWPDEETMKRIKREFEGISGTPGIPNVGGAMYTTHIPIIAP KASVGTYFNKRHTERNQKTSYSITVQGVVDAKGVFRDVCIGYPGSYPDDQVLENSALYERATRGSLKGVWIVGNSGHPLM DGVLVPYTHQNLTWTQHAFNEKVADIQMVAKEAFARLKGRWACLQKRTEVKLQDLPVLLGACCVLHNICEMRSEKMDPEW KFDLFDDEMVAEKSVRSNVAAQARDQIAHYLLHHGRAGTGFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 512 | 505 | 8.0E-226 | – | |
| PANTHER | 8 | 512 | 505 | 8.0E-226 | – | |
| MobiDBLite | 23 | 40 | 18 | - | – | |
| MobiDBLite | 23 | 56 | 34 | - | – | |
| Pfam | 311 | 467 | 157 | 6.5E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0228700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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