Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0230600
Transcript ID	LotjaGi6g1v0230600.1
Lotus japonicus genome version	Gifu v1.2
Description	Nucleosome assembly protein 1-like 1; TAIR: AT5G56950.1 nucleosome assembly protein 1;3; Swiss-Prot: sp\|Q70Z18\|NAP1B_TOBAC Nucleosome assembly protein 1;2; TrEMBL-Plants: tr\|I3SY61\|I3SY61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0230600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:53933878..53937909) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAGATACCCTAGTACCATAGAATCACATAATAACCAAATTAAACAAGGAAAGAGAGGGGGGAGGGCTTTTGTTTAAA AGGAGGGAGAGAGAGCCACTTCAGCCGTACTACAACATCATCATCAAAACAAAACCCTCTTCCCCACTTTCACTGTCCAT ATCCCCAATCTCTCTATCCCTCTGGGTGTACTTTTCCTCTTCTTGCCCCTCTCTCTGAATGAGCAACAACAACACCAACA ACTTCAACATGGCAGATCTCACTTCAGGTTTGCATCATGCCCTTCATCAATCACACACTCTCTCTCTCTCACTCTCATGA TTTTCACACAATTTTTTTGATTTTTTTTTTGCAGCTCTCAACGAAGAGAATCAAGCTGACCTAGTCAATGCACTCAAGGT TTGCACTTTGCATGAATTCGCAAACCCCCTTTGTTGCATCAAAAACGAATTTTGCTATCCCCTTAACAGACCCTGTTTTT TAATTTTGATTTTTTTTTTGGGTAAAGTTTTGAACTTTATCGTTATCTACTATGGTTTTGTCCAACTTTGAGTTTTCTTT GAATGATGGGGTTGTGTTCATTGCTGGAAATCAAGTTTTATGTTTTGGGTAATTGGGTTTGTGTCTGGTGATTGGTTGAG TTATTAAGCAATTTTTGTTTGTTTGTTGAATTTGTTTGCAGAGCAAGATACAGAGTCTGGCTGGGATTTACTCTGATGTT CTGGAGAGTCTTGAACCTAATGTCAGGAAGAGAGTTGAAGTTCTCAGGGAGATTCAGGTATACCCTATTCTTACTGGGCT GTTTATATTTTGTCTTTTATGTTTATTGTATAATTTATCCAATCCAGTGTTGTCAAACCGCGATCGCGGACCATCGCGGT ATTTTGTCAAATCCGCTATTTCGGCCGATATTTAGCGGCGAATAGCGCGCTATTGTGGGCAATAGCGGAGTCGCGATTAG CCAAAAATCCGCTACGCGCCGCTATAGCTGCTATTTGATAACACTCATATGTGCATTTTATTTAAGTGACTCTGTTAAAT GGAGGGAGAGTATCATCATCATTATTTGAATGAAATATATCACTTTAATTTACAAGTTGGTGAGTCTAAAGTTGACATTT GATATGGAGAATGGGTTTCTAGTATATATAATTTCTGATGAACTTTAGTGTATTCAGAAATCTATGTTGTACTTTGGTAT GATATTGTTGTAGTATAATTATATTTCATCATGCCATTTCTTTTATTATTTAATTTTTTTTTTCCCTGGCTATATCTCTC ATCAGGCTAAAATAGCTGTGTTCTGAATTTCAAATTTGAGTTTGTTTTTTGTGGTTATACTTATACCTTTTCCACCCATT TACAATGTTAAATGAATATGTCAATTGCTTTTGTAGTTTGTACTTGAGCTTTCCTGTTATTGATCCTGTAAAGATGAGTT GGTGTGTTATTCCATTATGTCACCTTGTGAGCTTGTTTTCTAAATGTACAGGGGCAACATGATGAATTTGAGGCGAAGTT TTTAGAGGAGAGAGCAGCTCTTGAAGCCAAATACCAAAGCTTGTATCAACCGTTGTACACAAAGGTATCCTGAGGATTCT GTTATCGCAGTGACTTGCATATGATGTTTAAGCTATCTTTGTGCATGTTGCATAATAGGCTTCTCTTCAATATCAGACAT GGTGCTGTTTAAGGCTGCATTACTGGTCCAGATTTCAAATTTAAGCATGCTTATAATTTCTGTTGATCAAAATTTAAATT GTTGAGTCTGATAATGTATTGGAATATTTGACATTTGACGTAATATCTTTGACACTGAACTTATTATAAATGGATGCAGC GCTTTGAAATAGTGAATGGTGTTACTGAAGTGGAGGGGGGAGCAGATGAACCGGCAGCTAAAGGTACTAGAAATGGACAC CTTATTCTTTTATTGTTTCAATTCTCTGACCTGGTAATTTGTTTGTGACTTTTGTAGAGAAAGGAGTGCCTTCTTTTTGG CTCAATGCAATGAATAATAATGATGTTTTAACTGAAGAGGTTAGTCAATACTCAATAGTGTTCAACTCAACTGTTAACTT CTCTCCCCCAAATGCTTGTGAGTTTTGCCACAAAATTACTTTTTAATCATCATCTTACTGCTGCTTTTGTGAAGTAGATT TCTGAGCATGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGATGACCCTAAAGGATTCAAACT TGAGTTTTTCTTTGATTCCAATCCGTACTTTTCAAACTCTGTCTTGACTAAAACATATCATATGATTGATGAGGATGAAC CTATATTGGAGAAAGCAATTGGGTAAGTCAATCTTTAATTCTTTACACAGGATGCTATTATGCTTTATGTGTTCCATAGT TTACAATCTTGTCAAGTGGCTGGATTGATCTTGAATAAGGCTTGCTTGCATTCTTTTATGTAGGACGGAAATTGAATGGT ACCCTGGAAAAAATTTGACCGAGAAGGTTCTGAAGAAAAAGCCTAAGAAGGGTGCTAAGAATGCTAAACCAATTACCAAA ACTGAAAAATGTGAAAGTTTCTTCAATTTTTTCAGTCCACCTGAAGTCCCTGATGATGATGATGACATTGATGCAGATAT GGTATGGCAGTCTGTATTGATAAACTTATGGTTAAAATTAGTATGCAACATCTAACTACTGCTTGAACAATTTCATTTTC TGACAGGCTGAGGAGCTTCAGAATCAGATGGAACAAGATTATGACATTGGGTGAGCTGAATTTGCCTGCTCATATGCTGT TTAATCATAAATGTTGACTCATGTTGCTATGTGGCATTTGTAATCTTTAATCTGTTCTTCTGACCTGTGATGCTTCTTTA GGTCCACAATAAGAGACAAGATTGTCCCCCATGCTGTATCATGGTTTACTGGGGAGGCCCTTCAGGGAGATGAGTTTGAA GATCTCGAGGATGAAGAAGATGACGATGAAGATGACGAAGAGGATGATGATGAAGATGATGATGACGATGATGAAGATGA GGAAGAGCTTAAGACTAAAAAGAAGGTATAATATTAATTGGTTTGAAGTGTGCTGAAACCTTGTTTATTTTTCATTTGAG GTTTGAACCTGACTTTGTTTTTCATGTTTCCTCTGGTGCCAATTTCCTTTTGAATGTTGCTGCAGCCATCCCCAAACAAG GTACGTTTATTTTGATTTTTCTTATTTTAATTAATAATTAAGTCATATGGACACATCGGGTCTCACCCTAGATATTATGC TGTACTATACATGTCTTGTTTTCTTCTTAAATTTGTTTGCATGATGCTGTATCAGTTAACATTGTCTTTATTTTCCATGG CTCTCTTAACATTCCATTCCTGATTTTGATTTTGGCTTTACATGTTCAGAAGGGTGGAAAAGCACAGCTTGGCGATGGTG GTGAGCGGCCTCCAGAGTGCAAGCAGCAGTAGATGTTTGTCACTTCAGTTCGCTATGGAGTTGACAGTTGCTTTGGGGTG CCAAGATGCATGATGAAAAAGTTGGGTTTCAATTTGATGCTGTTTTTCATGGTCCTTGATTAATTTTCCTCCCTAGATCA GTAGATCCTATAGTCTAAATTATTCAGTCCCTTTTCTATCCATTTGGAGAATATGGTTATATAGTTTTAGGGGTGCTGTT TTTTTATTACTGCTGGAATTTATATGTCCGATCCAGTTACTTCAAAATACATAGTTTGTGCTTCATCAAAATCAATTTTG CCCGTTAAATGGGATCAGTATTGCAGCGAAGGTACTTGATTTTGCATTTTACTATCCTCCATTTTTTCATTGACAAGTTA TTAAATTCAAATACTTGAATTGAAGGAAGTTGTGAAAGCATAAAGGGCCTTTTCATAGAGGGATATCATGTTATATGATA TGTCTTAAGGGGTCTGGTTGCAATGTGAACGAGAAGGAGTGATAAGTTTGTTCTTTGTAGAATTTGAGAATTGAGAGAGT ATTGATTTAAGAAATACTGTTTTCCCTTTGGC

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0230600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAACAACAACACCAACAACTTCAACATGGCAGATCTCACTTCAGCTCTCAACGAAGAGAATCAAGCTGACCTAGT CAATGCACTCAAGAGCAAGATACAGAGTCTGGCTGGGATTTACTCTGATGTTCTGGAGAGTCTTGAACCTAATGTCAGGA AGAGAGTTGAAGTTCTCAGGGAGATTCAGGGGCAACATGATGAATTTGAGGCGAAGTTTTTAGAGGAGAGAGCAGCTCTT GAAGCCAAATACCAAAGCTTGTATCAACCGTTGTACACAAAGCGCTTTGAAATAGTGAATGGTGTTACTGAAGTGGAGGG GGGAGCAGATGAACCGGCAGCTAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAATAATAATGATGTTTTAA CTGAAGAGATTTCTGAGCATGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGATGACCCTAAA GGATTCAAACTTGAGTTTTTCTTTGATTCCAATCCGTACTTTTCAAACTCTGTCTTGACTAAAACATATCATATGATTGA TGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCTGGAAAAAATTTGACCGAGAAGGTTC TGAAGAAAAAGCCTAAGAAGGGTGCTAAGAATGCTAAACCAATTACCAAAACTGAAAAATGTGAAAGTTTCTTCAATTTT TTCAGTCCACCTGAAGTCCCTGATGATGATGATGACATTGATGCAGATATGGCTGAGGAGCTTCAGAATCAGATGGAACA AGATTATGACATTGGGTCCACAATAAGAGACAAGATTGTCCCCCATGCTGTATCATGGTTTACTGGGGAGGCCCTTCAGG GAGATGAGTTTGAAGATCTCGAGGATGAAGAAGATGACGATGAAGATGACGAAGAGGATGATGATGAAGATGATGATGAC GATGATGAAGATGAGGAAGAGCTTAAGACTAAAAAGAAGCCATCCCCAAACAAGAAGGGTGGAAAAGCACAGCTTGGCGA TGGTGGTGAGCGGCCTCCAGAGTGCAAGCAGCAGTAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0230600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNNNTNNFNMADLTSALNEENQADLVNALKSKIQSLAGIYSDVLESLEPNVRKRVEVLREIQGQHDEFEAKFLEERAAL EAKYQSLYQPLYTKRFEIVNGVTEVEGGADEPAAKEKGVPSFWLNAMNNNDVLTEEISEHDEGALKFLKDIKWSRIDDPK GFKLEFFFDSNPYFSNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKNLTEKVLKKKPKKGAKNAKPITKTEKCESFFNF FSPPEVPDDDDDIDADMAEELQNQMEQDYDIGSTIRDKIVPHAVSWFTGEALQGDEFEDLEDEEDDDEDDEEDDDEDDDD DDEDEEELKTKKKPSPNKKGGKAQLGDGGERPPECKQQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11875:SF109 View details on PTHR11875:SF109 Search for proteins/transripts with this domain View external data on PTHR11875:SF109	1	343	343	3.0E-170	–
PANTHER	PTHR11875 View details on PTHR11875 Search for proteins/transripts with this domain View external data on PTHR11875	1	343	343	3.0E-170	IPR002164 Show description in modal box View details on IPR002164 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF143113 View details on SSF143113 Search for proteins/transripts with this domain View external data on SSF143113	31	289	259	1.05E-83	IPR037231 Show description in modal box View details on IPR037231 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00956 View details on PF00956 Search for proteins/transripts with this domain View external data on PF00956	54	290	237	1.2E-81	IPR002164 Show description in modal box View details on IPR002164 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.1120.90 View details on G3DSA:3.30.1120.90 Search for proteins/transripts with this domain View external data on G3DSA:3.30.1120.90	114	291	178	1.3E-66	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	289	358	70	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	294	325	32	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006334 View details of GO:0006334 AmiGO InterPro QuickGO	Biological process	Nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.	Subterm of View details of GO:0034728 View details of GO:0065004 Part of View details of GO:0031497

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0230600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0230600.1